data_6W3Q # _model_server_result.job_id Ngv0NLLktPyuewVzj-A9Mw _model_server_result.datetime_utc '2024-10-22 03:36:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w3q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":101}' # _entry.id 6W3Q # _exptl.entry_id 6W3Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.413 _cell.angle_gamma 90 _cell.entry_id 6W3Q _cell.length_a 72.05 _cell.length_b 66.604 _cell.length_c 90.676 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W3Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,E,F,G,H,I,K 1 1 D,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DG 9 D DG 9 1_555 B P C7R 10 D C7R 10 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.607 ? covale ? covale2 B O3' DG 9 D DG 9 1_555 B P C7R 10 D C7R 10 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.616 ? metalc ? metalc1 A O3' DC 11 C DC 11 1_555 F NA NA . C NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.16 ? metalc ? metalc2 B OP2 DC 8 D DC 8 1_555 G CA CA . D CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? hydrog WATSON-CRICK hydrog1 A N3 DT 1 C DT 1 1_555 C N1 DA 11 E DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A O4 DT 1 C DT 1 1_555 C N6 DA 11 E DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog3 A O2 DC 2 C DC 2 1_555 C N2 DG 10 E DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog4 A N2 DG 3 C DG 3 1_555 C O2 DC 9 E DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog5 A N1 DA 4 C DA 4 1_555 C N1 DG 7 E DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog6 A N6 DA 4 C DA 4 1_555 C O6 DG 7 E DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog7 A O2 DC 5 C DC 5 1_555 C N2 DG 7 E DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N1 DG 6 C DG 6 1_555 C N3 DC 6 E DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N2 DG 6 C DG 6 1_555 C O2 DC 6 E DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O6 DG 6 C DG 6 1_555 C N4 DC 6 E DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 DG 7 C DG 7 1_555 C N3 DC 5 E DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N2 DG 7 C DG 7 1_555 C O2 DC 5 E DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O6 DG 7 C DG 7 1_555 C N4 DC 5 E DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N1 DA 8 C DA 8 1_555 C N3 DT 4 E DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N6 DA 8 C DA 8 1_555 C O4 DT 4 E DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DT 9 C DT 9 1_555 C N1 DA 3 E DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O4 DT 9 C DT 9 1_555 C N6 DA 3 E DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N3 DC 10 C DC 10 1_555 C N1 DG 2 E DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N4 DC 10 C DC 10 1_555 C O6 DG 2 E DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O2 DC 10 C DC 10 1_555 C N2 DG 2 E DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog21 A N3 DC 11 C DC 11 1_555 C N2 DG 1 E DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N1 DG 1 D DG 1 1_555 C N3 DC 21 E DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N2 DG 1 D DG 1 1_555 C O2 DC 21 E DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B O6 DG 1 D DG 1 1_555 C N4 DC 21 E DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N3 DC 2 D DC 2 1_555 C N1 DG 20 E DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N4 DC 2 D DC 2 1_555 C O6 DG 20 E DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B O2 DC 2 D DC 2 1_555 C N2 DG 20 E DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B N3 DT 3 D DT 3 1_555 C N1 DA 19 E DA 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B O4 DT 3 D DT 3 1_555 C N6 DA 19 E DA 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 B N1 DG 4 D DG 4 1_555 C N3 DC 18 E DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 B N2 DG 4 D DG 4 1_555 C O2 DC 18 E DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 B O6 DG 4 D DG 4 1_555 C N4 DC 18 E DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 B N1 DA 5 D DA 5 1_555 C N3 DT 17 E DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 B N6 DA 5 D DA 5 1_555 C O4 DT 17 E DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 B N3 DT 6 D DT 6 1_555 C N1 DA 16 E DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 B O4 DT 6 D DT 6 1_555 C N6 DA 16 E DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 B N1 DG 7 D DG 7 1_555 C N3 DC 15 E DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 B N2 DG 7 D DG 7 1_555 C O2 DC 15 E DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 B O6 DG 7 D DG 7 1_555 C N4 DC 15 E DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 B N3 DC 8 D DC 8 1_555 C N1 DG 14 E DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 B N4 DC 8 D DC 8 1_555 C O6 DG 14 E DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 B O2 DC 8 D DC 8 1_555 C N2 DG 14 E DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 B N1 DG 9 D DG 9 1_555 C N3 DC 13 E DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 B N2 DG 9 D DG 9 1_555 C O2 DC 13 E DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog45 B O6 DG 9 D DG 9 1_555 C N4 DC 13 E DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6W3Q _atom_sites.fract_transf_matrix[1][1] 0.013879 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004891 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015014 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011693 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 NA C 1 101 22 NA NA . G 6 CA D 1 101 23 CA CA . H 7 HOH C 1 201 6 HOH HOH . I 7 HOH D 1 201 5 HOH HOH . J 7 HOH A 1 401 9 HOH HOH . J 7 HOH A 2 402 13 HOH HOH . J 7 HOH A 3 403 17 HOH HOH . J 7 HOH A 4 404 18 HOH HOH . J 7 HOH A 5 405 20 HOH HOH . J 7 HOH A 6 406 2 HOH HOH . J 7 HOH A 7 407 1 HOH HOH . J 7 HOH A 8 408 3 HOH HOH . J 7 HOH A 9 409 12 HOH HOH . J 7 HOH A 10 410 21 HOH HOH . J 7 HOH A 11 411 19 HOH HOH . K 7 HOH B 1 401 16 HOH HOH . K 7 HOH B 2 402 8 HOH HOH . K 7 HOH B 3 403 5 HOH HOH . K 7 HOH B 4 404 4 HOH HOH . K 7 HOH B 5 405 15 HOH HOH . K 7 HOH B 6 406 14 HOH HOH . K 7 HOH B 7 407 10 HOH HOH . K 7 HOH B 8 408 3 HOH HOH . K 7 HOH B 9 409 6 HOH HOH . K 7 HOH B 10 410 11 HOH HOH . K 7 HOH B 11 411 7 HOH HOH . K 7 HOH B 12 412 2 HOH HOH . K 7 HOH B 13 413 4 HOH HOH . K 7 HOH B 14 414 1 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 6 _atom_site.Cartn_x 42.33 _atom_site.Cartn_y 21.411 _atom_site.Cartn_z 214.025 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 109.58 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 101 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 1 #