data_6W47 # _model_server_result.job_id iAT6DUW6D3JQ42T5M1ReHA _model_server_result.datetime_utc '2024-11-26 06:27:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w47 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 6W47 # _exptl.entry_id 6W47 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.92 _cell.angle_gamma 90 _cell.entry_id 6W47 _cell.length_a 31.679 _cell.length_b 19.556 _cell.length_c 37.528 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W47 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 1 A PRO 1 1_555 A N HYP 2 A HYP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C HYP 2 A HYP 2 1_555 A N GLY 3 A GLY 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C PRO 4 A PRO 4 1_555 A N HYP 5 A HYP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 A C HYP 5 A HYP 5 1_555 A N GLY 6 A GLY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C PRO 10 A PRO 10 1_555 A N HYP 11 A HYP 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 A C HYP 11 A HYP 11 1_555 A N GLY 12 A GLY 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale7 A C PRO 13 A PRO 13 1_555 A N HYP 14 A HYP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale8 A C HYP 14 A HYP 14 1_555 A N GLY 15 A GLY 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale9 A C PRO 16 A PRO 16 1_555 A N HYP 17 A HYP 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale10 A C HYP 17 A HYP 17 1_555 A N GLY 18 A GLY 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale11 A C GLY 18 A GLY 18 1_555 A N SAR 19 A SAR 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale12 A C SAR 19 A SAR 19 1_555 A N HYP 20 A HYP 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale13 A C HYP 20 A HYP 20 1_555 A N GLY 21 A GLY 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale14 A C PRO 22 A PRO 22 1_555 A N HYP 23 A HYP 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale15 A C HYP 23 A HYP 23 1_555 A N GLY 24 A GLY 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale16 A C PRO 25 A PRO 25 1_555 A N HYP 26 A HYP 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale17 B C HYP 2 B HYP 2 1_555 B N GLY 3 B GLY 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale18 B C PRO 4 B PRO 4 1_555 B N HYP 5 B HYP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale19 B C HYP 5 B HYP 5 1_555 B N GLY 6 B GLY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale20 B C PRO 10 B PRO 10 1_555 B N HYP 11 B HYP 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale21 B C HYP 11 B HYP 11 1_555 B N GLY 12 B GLY 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale22 B C PRO 13 B PRO 13 1_555 B N HYP 14 B HYP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale23 B C HYP 14 B HYP 14 1_555 B N GLY 15 B GLY 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale24 B C PRO 16 B PRO 16 1_555 B N HYP 17 B HYP 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale25 B C HYP 17 B HYP 17 1_555 B N GLY 18 B GLY 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale26 B C GLY 18 B GLY 18 1_555 B N SAR 19 B SAR 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale27 B C SAR 19 B SAR 19 1_555 B N HYP 20 B HYP 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale28 B C HYP 20 B HYP 20 1_555 B N GLY 21 B GLY 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale29 B C PRO 22 B PRO 22 1_555 B N HYP 23 B HYP 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale30 B C HYP 23 B HYP 23 1_555 B N GLY 24 B GLY 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale31 B C PRO 25 B PRO 25 1_555 B N HYP 26 B HYP 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale32 B C HYP 26 B HYP 26 1_555 B N GLZ 27 B GLZ 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale33 B C GLZ 27 B GLZ 27 1_555 B N NH2 28 B NH2 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale34 C C HYP 2 C HYP 2 1_555 C N GLY 3 C GLY 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale35 C C PRO 4 C PRO 4 1_555 C N HYP 5 C HYP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale36 C C HYP 5 C HYP 5 1_555 C N GLY 6 C GLY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale37 C C PRO 10 C PRO 10 1_555 C N HYP 11 C HYP 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale38 C C HYP 11 C HYP 11 1_555 C N GLY 12 C GLY 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale39 C C PRO 13 C PRO 13 1_555 C N HYP 14 C HYP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale40 C C HYP 14 C HYP 14 1_555 C N GLY 15 C GLY 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale41 C C PRO 16 C PRO 16 1_555 C N HYP 17 C HYP 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale42 C C HYP 17 C HYP 17 1_555 C N GLY 18 C GLY 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale43 C C GLY 18 C GLY 18 1_555 C N SAR 19 C SAR 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale44 C C SAR 19 C SAR 19 1_555 C N HYP 20 C HYP 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale45 C C HYP 20 C HYP 20 1_555 C N GLY 21 C GLY 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale46 C C PRO 22 C PRO 22 1_555 C N HYP 23 C HYP 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale47 C C HYP 23 C HYP 23 1_555 C N GLY 24 C GLY 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale48 C C PRO 25 C PRO 25 1_555 C N HYP 26 C HYP 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale49 C C HYP 26 C HYP 26 1_555 C N GLZ 27 C GLZ 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale50 C C GLZ 27 C GLZ 27 1_555 C N NH2 28 C NH2 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 27 n n C1 C2 EDO sing 28 n n C1 H11 EDO sing 29 n n C1 H12 EDO sing 30 n n O1 HO1 EDO sing 31 n n C2 O2 EDO sing 32 n n C2 H21 EDO sing 33 n n C2 H22 EDO sing 34 n n O2 HO2 EDO sing 35 n n # _atom_sites.entry_id 6W47 _atom_sites.fract_transf_matrix[1][1] 0.031567 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004952 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.051135 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026973 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 EDO C 1 101 1 EDO EDO . E 3 HOH A 1 101 56 HOH HOH . E 3 HOH A 2 102 34 HOH HOH . E 3 HOH A 3 103 11 HOH HOH . E 3 HOH A 4 104 36 HOH HOH . E 3 HOH A 5 105 65 HOH HOH . E 3 HOH A 6 106 28 HOH HOH . E 3 HOH A 7 107 58 HOH HOH . E 3 HOH A 8 108 14 HOH HOH . E 3 HOH A 9 109 53 HOH HOH . E 3 HOH A 10 110 24 HOH HOH . E 3 HOH A 11 111 29 HOH HOH . E 3 HOH A 12 112 13 HOH HOH . E 3 HOH A 13 113 82 HOH HOH . E 3 HOH A 14 114 10 HOH HOH . E 3 HOH A 15 115 46 HOH HOH . E 3 HOH A 16 116 17 HOH HOH . E 3 HOH A 17 117 66 HOH HOH . E 3 HOH A 18 118 38 HOH HOH . E 3 HOH A 19 119 8 HOH HOH . E 3 HOH A 20 120 39 HOH HOH . E 3 HOH A 21 121 63 HOH HOH . E 3 HOH A 22 122 51 HOH HOH . E 3 HOH A 23 123 70 HOH HOH . E 3 HOH A 24 124 31 HOH HOH . E 3 HOH A 25 125 59 HOH HOH . F 3 HOH B 1 101 79 HOH HOH . F 3 HOH B 2 102 27 HOH HOH . F 3 HOH B 3 103 12 HOH HOH . F 3 HOH B 4 104 19 HOH HOH . F 3 HOH B 5 105 64 HOH HOH . F 3 HOH B 6 106 71 HOH HOH . F 3 HOH B 7 107 3 HOH HOH . F 3 HOH B 8 108 6 HOH HOH . F 3 HOH B 9 109 9 HOH HOH . F 3 HOH B 10 110 4 HOH HOH . F 3 HOH B 11 111 35 HOH HOH . F 3 HOH B 12 112 2 HOH HOH . F 3 HOH B 13 113 16 HOH HOH . F 3 HOH B 14 114 80 HOH HOH . F 3 HOH B 15 115 7 HOH HOH . F 3 HOH B 16 116 21 HOH HOH . F 3 HOH B 17 117 30 HOH HOH . F 3 HOH B 18 118 22 HOH HOH . F 3 HOH B 19 119 74 HOH HOH . F 3 HOH B 20 120 42 HOH HOH . F 3 HOH B 21 121 48 HOH HOH . F 3 HOH B 22 122 72 HOH HOH . F 3 HOH B 23 123 41 HOH HOH . F 3 HOH B 24 124 15 HOH HOH . F 3 HOH B 25 125 69 HOH HOH . F 3 HOH B 26 126 37 HOH HOH . F 3 HOH B 27 127 26 HOH HOH . F 3 HOH B 28 128 23 HOH HOH . F 3 HOH B 29 129 45 HOH HOH . G 3 HOH C 1 201 40 HOH HOH . G 3 HOH C 2 202 57 HOH HOH . G 3 HOH C 3 203 55 HOH HOH . G 3 HOH C 4 204 61 HOH HOH . G 3 HOH C 5 205 47 HOH HOH . G 3 HOH C 6 206 32 HOH HOH . G 3 HOH C 7 207 75 HOH HOH . G 3 HOH C 8 208 33 HOH HOH . G 3 HOH C 9 209 49 HOH HOH . G 3 HOH C 10 210 62 HOH HOH . G 3 HOH C 11 211 76 HOH HOH . G 3 HOH C 12 212 18 HOH HOH . G 3 HOH C 13 213 44 HOH HOH . G 3 HOH C 14 214 5 HOH HOH . G 3 HOH C 15 215 1 HOH HOH . G 3 HOH C 16 216 43 HOH HOH . G 3 HOH C 17 217 52 HOH HOH . G 3 HOH C 18 218 50 HOH HOH . G 3 HOH C 19 219 54 HOH HOH . G 3 HOH C 20 220 20 HOH HOH . G 3 HOH C 21 221 25 HOH HOH . G 3 HOH C 22 222 81 HOH HOH . G 3 HOH C 23 223 73 HOH HOH . G 3 HOH C 24 224 68 HOH HOH . G 3 HOH C 25 225 60 HOH HOH . G 3 HOH C 26 226 67 HOH HOH . G 3 HOH C 27 227 78 HOH HOH . G 3 HOH C 28 228 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 2.452 3.468 11.887 1 21.8 ? C1 EDO 101 C 1 HETATM 2 O O1 EDO . . . D 2 1.514 4.082 10.995 1 16.53 ? O1 EDO 101 C 1 HETATM 3 C C2 EDO . . . D 2 2.186 1.973 12 1 22.99 ? C2 EDO 101 C 1 HETATM 4 O O2 EDO . . . D 2 3.422 1.266 11.811 1 26.75 ? O2 EDO 101 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 478 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #