data_6W4C # _model_server_result.job_id u2WYpulEbhokUqzd8dNhjw _model_server_result.datetime_utc '2024-10-26 02:31:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w4c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6W4C # _exptl.entry_id 6W4C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6W4C _cell.length_a 97.079 _cell.length_b 97.079 _cell.length_c 80.626 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W4C _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 6W4C _atom_sites.fract_transf_matrix[1][1] 0.010301 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010301 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 1 FMN FMN . C 3 SL7 A 1 402 1 SL7 INH . D 4 HOH A 1 501 199 HOH HOH . D 4 HOH A 2 502 147 HOH HOH . D 4 HOH A 3 503 168 HOH HOH . D 4 HOH A 4 504 198 HOH HOH . D 4 HOH A 5 505 171 HOH HOH . D 4 HOH A 6 506 152 HOH HOH . D 4 HOH A 7 507 7 HOH HOH . D 4 HOH A 8 508 153 HOH HOH . D 4 HOH A 9 509 151 HOH HOH . D 4 HOH A 10 510 205 HOH HOH . D 4 HOH A 11 511 157 HOH HOH . D 4 HOH A 12 512 149 HOH HOH . D 4 HOH A 13 513 71 HOH HOH . D 4 HOH A 14 514 70 HOH HOH . D 4 HOH A 15 515 130 HOH HOH . D 4 HOH A 16 516 193 HOH HOH . D 4 HOH A 17 517 123 HOH HOH . D 4 HOH A 18 518 97 HOH HOH . D 4 HOH A 19 519 48 HOH HOH . D 4 HOH A 20 520 111 HOH HOH . D 4 HOH A 21 521 89 HOH HOH . D 4 HOH A 22 522 112 HOH HOH . D 4 HOH A 23 523 56 HOH HOH . D 4 HOH A 24 524 104 HOH HOH . D 4 HOH A 25 525 12 HOH HOH . D 4 HOH A 26 526 85 HOH HOH . D 4 HOH A 27 527 73 HOH HOH . D 4 HOH A 28 528 22 HOH HOH . D 4 HOH A 29 529 47 HOH HOH . D 4 HOH A 30 530 88 HOH HOH . D 4 HOH A 31 531 126 HOH HOH . D 4 HOH A 32 532 15 HOH HOH . D 4 HOH A 33 533 121 HOH HOH . D 4 HOH A 34 534 84 HOH HOH . D 4 HOH A 35 535 156 HOH HOH . D 4 HOH A 36 536 27 HOH HOH . D 4 HOH A 37 537 115 HOH HOH . D 4 HOH A 38 538 24 HOH HOH . D 4 HOH A 39 539 54 HOH HOH . D 4 HOH A 40 540 132 HOH HOH . D 4 HOH A 41 541 188 HOH HOH . D 4 HOH A 42 542 200 HOH HOH . D 4 HOH A 43 543 2 HOH HOH . D 4 HOH A 44 544 114 HOH HOH . D 4 HOH A 45 545 91 HOH HOH . D 4 HOH A 46 546 100 HOH HOH . D 4 HOH A 47 547 5 HOH HOH . D 4 HOH A 48 548 158 HOH HOH . D 4 HOH A 49 549 61 HOH HOH . D 4 HOH A 50 550 181 HOH HOH . D 4 HOH A 51 551 39 HOH HOH . D 4 HOH A 52 552 33 HOH HOH . D 4 HOH A 53 553 46 HOH HOH . D 4 HOH A 54 554 96 HOH HOH . D 4 HOH A 55 555 65 HOH HOH . D 4 HOH A 56 556 80 HOH HOH . D 4 HOH A 57 557 25 HOH HOH . D 4 HOH A 58 558 45 HOH HOH . D 4 HOH A 59 559 16 HOH HOH . D 4 HOH A 60 560 195 HOH HOH . D 4 HOH A 61 561 150 HOH HOH . D 4 HOH A 62 562 9 HOH HOH . D 4 HOH A 63 563 177 HOH HOH . D 4 HOH A 64 564 8 HOH HOH . D 4 HOH A 65 565 119 HOH HOH . D 4 HOH A 66 566 138 HOH HOH . D 4 HOH A 67 567 58 HOH HOH . D 4 HOH A 68 568 20 HOH HOH . D 4 HOH A 69 569 53 HOH HOH . D 4 HOH A 70 570 117 HOH HOH . D 4 HOH A 71 571 133 HOH HOH . D 4 HOH A 72 572 90 HOH HOH . D 4 HOH A 73 573 131 HOH HOH . D 4 HOH A 74 574 128 HOH HOH . D 4 HOH A 75 575 11 HOH HOH . D 4 HOH A 76 576 6 HOH HOH . D 4 HOH A 77 577 94 HOH HOH . D 4 HOH A 78 578 62 HOH HOH . D 4 HOH A 79 579 17 HOH HOH . D 4 HOH A 80 580 23 HOH HOH . D 4 HOH A 81 581 116 HOH HOH . D 4 HOH A 82 582 169 HOH HOH . D 4 HOH A 83 583 13 HOH HOH . D 4 HOH A 84 584 31 HOH HOH . D 4 HOH A 85 585 110 HOH HOH . D 4 HOH A 86 586 75 HOH HOH . D 4 HOH A 87 587 34 HOH HOH . D 4 HOH A 88 588 108 HOH HOH . D 4 HOH A 89 589 10 HOH HOH . D 4 HOH A 90 590 35 HOH HOH . D 4 HOH A 91 591 129 HOH HOH . D 4 HOH A 92 592 57 HOH HOH . D 4 HOH A 93 593 167 HOH HOH . D 4 HOH A 94 594 82 HOH HOH . D 4 HOH A 95 595 55 HOH HOH . D 4 HOH A 96 596 197 HOH HOH . D 4 HOH A 97 597 26 HOH HOH . D 4 HOH A 98 598 105 HOH HOH . D 4 HOH A 99 599 172 HOH HOH . D 4 HOH A 100 600 42 HOH HOH . D 4 HOH A 101 601 74 HOH HOH . D 4 HOH A 102 602 206 HOH HOH . D 4 HOH A 103 603 83 HOH HOH . D 4 HOH A 104 604 3 HOH HOH . D 4 HOH A 105 605 134 HOH HOH . D 4 HOH A 106 606 72 HOH HOH . D 4 HOH A 107 607 109 HOH HOH . D 4 HOH A 108 608 66 HOH HOH . D 4 HOH A 109 609 67 HOH HOH . D 4 HOH A 110 610 102 HOH HOH . D 4 HOH A 111 611 64 HOH HOH . D 4 HOH A 112 612 106 HOH HOH . D 4 HOH A 113 613 179 HOH HOH . D 4 HOH A 114 614 21 HOH HOH . D 4 HOH A 115 615 4 HOH HOH . D 4 HOH A 116 616 78 HOH HOH . D 4 HOH A 117 617 76 HOH HOH . D 4 HOH A 118 618 79 HOH HOH . D 4 HOH A 119 619 59 HOH HOH . D 4 HOH A 120 620 60 HOH HOH . D 4 HOH A 121 621 161 HOH HOH . D 4 HOH A 122 622 174 HOH HOH . D 4 HOH A 123 623 189 HOH HOH . D 4 HOH A 124 624 86 HOH HOH . D 4 HOH A 125 625 93 HOH HOH . D 4 HOH A 126 626 81 HOH HOH . D 4 HOH A 127 627 63 HOH HOH . D 4 HOH A 128 628 107 HOH HOH . D 4 HOH A 129 629 164 HOH HOH . D 4 HOH A 130 630 148 HOH HOH . D 4 HOH A 131 631 122 HOH HOH . D 4 HOH A 132 632 163 HOH HOH . D 4 HOH A 133 633 92 HOH HOH . D 4 HOH A 134 634 43 HOH HOH . D 4 HOH A 135 635 51 HOH HOH . D 4 HOH A 136 636 175 HOH HOH . D 4 HOH A 137 637 36 HOH HOH . D 4 HOH A 138 638 98 HOH HOH . D 4 HOH A 139 639 77 HOH HOH . D 4 HOH A 140 640 87 HOH HOH . D 4 HOH A 141 641 52 HOH HOH . D 4 HOH A 142 642 37 HOH HOH . D 4 HOH A 143 643 180 HOH HOH . D 4 HOH A 144 644 38 HOH HOH . D 4 HOH A 145 645 1 HOH HOH . D 4 HOH A 146 646 178 HOH HOH . D 4 HOH A 147 647 99 HOH HOH . D 4 HOH A 148 648 19 HOH HOH . D 4 HOH A 149 649 139 HOH HOH . D 4 HOH A 150 650 69 HOH HOH . D 4 HOH A 151 651 18 HOH HOH . D 4 HOH A 152 652 176 HOH HOH . D 4 HOH A 153 653 32 HOH HOH . D 4 HOH A 154 654 44 HOH HOH . D 4 HOH A 155 655 68 HOH HOH . D 4 HOH A 156 656 137 HOH HOH . D 4 HOH A 157 657 202 HOH HOH . D 4 HOH A 158 658 41 HOH HOH . D 4 HOH A 159 659 50 HOH HOH . D 4 HOH A 160 660 185 HOH HOH . D 4 HOH A 161 661 190 HOH HOH . D 4 HOH A 162 662 173 HOH HOH . D 4 HOH A 163 663 204 HOH HOH . D 4 HOH A 164 664 192 HOH HOH . D 4 HOH A 165 665 127 HOH HOH . D 4 HOH A 166 666 135 HOH HOH . D 4 HOH A 167 667 187 HOH HOH . D 4 HOH A 168 668 136 HOH HOH . D 4 HOH A 169 669 14 HOH HOH . D 4 HOH A 170 670 40 HOH HOH . D 4 HOH A 171 671 186 HOH HOH . D 4 HOH A 172 672 196 HOH HOH . D 4 HOH A 173 673 160 HOH HOH . D 4 HOH A 174 674 183 HOH HOH . D 4 HOH A 175 675 162 HOH HOH . D 4 HOH A 176 676 140 HOH HOH . D 4 HOH A 177 677 103 HOH HOH . D 4 HOH A 178 678 146 HOH HOH . D 4 HOH A 179 679 143 HOH HOH . D 4 HOH A 180 680 145 HOH HOH . D 4 HOH A 181 681 194 HOH HOH . D 4 HOH A 182 682 182 HOH HOH . D 4 HOH A 183 683 170 HOH HOH . D 4 HOH A 184 684 49 HOH HOH . D 4 HOH A 185 685 28 HOH HOH . D 4 HOH A 186 686 154 HOH HOH . D 4 HOH A 187 687 125 HOH HOH . D 4 HOH A 188 688 124 HOH HOH . D 4 HOH A 189 689 166 HOH HOH . D 4 HOH A 190 690 191 HOH HOH . D 4 HOH A 191 691 30 HOH HOH . D 4 HOH A 192 692 165 HOH HOH . D 4 HOH A 193 693 113 HOH HOH . D 4 HOH A 194 694 120 HOH HOH . D 4 HOH A 195 695 159 HOH HOH . D 4 HOH A 196 696 142 HOH HOH . D 4 HOH A 197 697 201 HOH HOH . D 4 HOH A 198 698 203 HOH HOH . D 4 HOH A 199 699 184 HOH HOH . D 4 HOH A 200 700 141 HOH HOH . D 4 HOH A 201 701 144 HOH HOH . D 4 HOH A 202 702 118 HOH HOH . D 4 HOH A 203 703 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 8.901 30.153 19.016 1 13.27 ? N1 FMN 401 A 1 HETATM 2 C C2 FMN . . . B 2 8.982 31.444 18.611 1 14.63 ? C2 FMN 401 A 1 HETATM 3 O O2 FMN . . . B 2 9.021 31.675 17.371 1 14.68 ? O2 FMN 401 A 1 HETATM 4 N N3 FMN . . . B 2 9.039 32.465 19.487 1 14.68 ? N3 FMN 401 A 1 HETATM 5 C C4 FMN . . . B 2 9.007 32.276 20.808 1 14.85 ? C4 FMN 401 A 1 HETATM 6 O O4 FMN . . . B 2 9.048 33.211 21.615 1 15.09 ? O4 FMN 401 A 1 HETATM 7 C C4A FMN . . . B 2 8.891 30.908 21.317 1 13.65 ? C4A FMN 401 A 1 HETATM 8 N N5 FMN . . . B 2 8.82 30.652 22.643 1 14.34 ? N5 FMN 401 A 1 HETATM 9 C C5A FMN . . . B 2 8.77 29.389 23.07 1 14.1 ? C5A FMN 401 A 1 HETATM 10 C C6 FMN . . . B 2 8.747 29.13 24.436 1 14.42 ? C6 FMN 401 A 1 HETATM 11 C C7 FMN . . . B 2 8.698 27.827 24.868 1 14.88 ? C7 FMN 401 A 1 HETATM 12 C C7M FMN . . . B 2 8.673 27.544 26.338 1 15.1 ? C7M FMN 401 A 1 HETATM 13 C C8 FMN . . . B 2 8.683 26.691 23.936 1 13.88 ? C8 FMN 401 A 1 HETATM 14 C C8M FMN . . . B 2 8.635 25.265 24.454 1 15.17 ? C8M FMN 401 A 1 HETATM 15 C C9 FMN . . . B 2 8.722 26.933 22.571 1 13.85 ? C9 FMN 401 A 1 HETATM 16 C C9A FMN . . . B 2 8.757 28.256 22.114 1 13.18 ? C9A FMN 401 A 1 HETATM 17 N N10 FMN . . . B 2 8.791 28.524 20.735 1 13.02 ? N10 FMN 401 A 1 HETATM 18 C C10 FMN . . . B 2 8.876 29.84 20.314 1 13.69 ? C10 FMN 401 A 1 HETATM 19 C C1' FMN . . . B 2 8.821 27.461 19.741 1 12.43 ? C1' FMN 401 A 1 HETATM 20 C C2' FMN . . . B 2 10.301 27.089 19.606 1 11.85 ? C2' FMN 401 A 1 HETATM 21 O O2' FMN . . . B 2 11.04 28.105 18.918 1 12.3 ? O2' FMN 401 A 1 HETATM 22 C C3' FMN . . . B 2 10.544 25.801 18.828 1 11.35 ? C3' FMN 401 A 1 HETATM 23 O O3' FMN . . . B 2 9.777 25.791 17.586 1 11.38 ? O3' FMN 401 A 1 HETATM 24 C C4' FMN . . . B 2 10.182 24.556 19.618 1 10.92 ? C4' FMN 401 A 1 HETATM 25 O O4' FMN . . . B 2 10.564 24.657 20.995 1 10.68 ? O4' FMN 401 A 1 HETATM 26 C C5' FMN . . . B 2 10.866 23.348 19.015 1 10.7 ? C5' FMN 401 A 1 HETATM 27 O O5' FMN . . . B 2 10.48 22.112 19.596 1 10.2 ? O5' FMN 401 A 1 HETATM 28 P P FMN . . . B 2 11.268 21.363 20.805 1 9.59 ? P FMN 401 A 1 HETATM 29 O O1P FMN . . . B 2 12.756 21.407 20.531 1 10.35 ? O1P FMN 401 A 1 HETATM 30 O O2P FMN . . . B 2 10.95 22.163 22.036 1 10.42 ? O2P FMN 401 A 1 HETATM 31 O O3P FMN . . . B 2 10.652 19.98 20.796 1 10.77 ? O3P FMN 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #