data_6W4C # _model_server_result.job_id mv7wX2p2YCmSCBcDw6yV4Q _model_server_result.datetime_utc '2024-11-23 00:41:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w4c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6W4C # _exptl.entry_id 6W4C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 394.384 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-[[3-[3-(dimethylamino)-1,2,4-oxadiazol-5-yl]-2-oxidanyl-phenyl]methylamino]-2~{H}-indazole-3-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6W4C _cell.length_a 97.079 _cell.length_b 97.079 _cell.length_c 80.626 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W4C _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H18 N6 O4' _chem_comp.formula_weight 394.384 _chem_comp.id SL7 _chem_comp.mon_nstd_flag . _chem_comp.name '5-[[3-[3-(dimethylamino)-1,2,4-oxadiazol-5-yl]-2-oxidanyl-phenyl]methylamino]-2~{H}-indazole-3-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N4 N5 SL7 sing 344 n y N4 C13 SL7 doub 345 n y N5 C14 SL7 sing 346 n y C13 C16 SL7 sing 347 n y C13 C12 SL7 sing 348 n y C16 C17 SL7 doub 349 n y O2 C15 SL7 doub 350 n n C14 C12 SL7 doub 351 n y C14 C15 SL7 sing 352 n n C12 C11 SL7 sing 353 n y C15 O1 SL7 sing 354 n n C17 C10 SL7 sing 355 n y C11 C10 SL7 doub 356 n y C10 N3 SL7 sing 357 n n N3 C9 SL7 sing 358 n n C7 C6 SL7 doub 359 n y C7 C8 SL7 sing 360 n y C6 C5 SL7 sing 361 n y C9 C8 SL7 sing 362 n n C8 C18 SL7 doub 363 n y C5 C4 SL7 doub 364 n y C18 C4 SL7 sing 365 n y C18 O3 SL7 sing 366 n n C4 C3 SL7 sing 367 n n C3 O SL7 sing 368 n y C3 N2 SL7 doub 369 n y O N1 SL7 sing 370 n y N2 C2 SL7 sing 371 n y N1 C2 SL7 doub 372 n y C2 N SL7 sing 373 n n C1 N SL7 sing 374 n n N C SL7 sing 375 n n C1 H1 SL7 sing 376 n n C1 H2 SL7 sing 377 n n C1 H3 SL7 sing 378 n n C7 H4 SL7 sing 379 n n C9 H5 SL7 sing 380 n n C9 H6 SL7 sing 381 n n C11 H7 SL7 sing 382 n n C16 H8 SL7 sing 383 n n O1 H9 SL7 sing 384 n n N5 H10 SL7 sing 385 n n C17 H11 SL7 sing 386 n n N3 H12 SL7 sing 387 n n C6 H13 SL7 sing 388 n n C5 H14 SL7 sing 389 n n O3 H15 SL7 sing 390 n n C H16 SL7 sing 391 n n C H17 SL7 sing 392 n n C H18 SL7 sing 393 n n # _atom_sites.entry_id 6W4C _atom_sites.fract_transf_matrix[1][1] 0.010301 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010301 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 1 FMN FMN . C 3 SL7 A 1 402 1 SL7 INH . D 4 HOH A 1 501 199 HOH HOH . D 4 HOH A 2 502 147 HOH HOH . D 4 HOH A 3 503 168 HOH HOH . D 4 HOH A 4 504 198 HOH HOH . D 4 HOH A 5 505 171 HOH HOH . D 4 HOH A 6 506 152 HOH HOH . D 4 HOH A 7 507 7 HOH HOH . D 4 HOH A 8 508 153 HOH HOH . D 4 HOH A 9 509 151 HOH HOH . D 4 HOH A 10 510 205 HOH HOH . D 4 HOH A 11 511 157 HOH HOH . D 4 HOH A 12 512 149 HOH HOH . D 4 HOH A 13 513 71 HOH HOH . D 4 HOH A 14 514 70 HOH HOH . D 4 HOH A 15 515 130 HOH HOH . D 4 HOH A 16 516 193 HOH HOH . D 4 HOH A 17 517 123 HOH HOH . D 4 HOH A 18 518 97 HOH HOH . D 4 HOH A 19 519 48 HOH HOH . D 4 HOH A 20 520 111 HOH HOH . D 4 HOH A 21 521 89 HOH HOH . D 4 HOH A 22 522 112 HOH HOH . D 4 HOH A 23 523 56 HOH HOH . D 4 HOH A 24 524 104 HOH HOH . D 4 HOH A 25 525 12 HOH HOH . D 4 HOH A 26 526 85 HOH HOH . D 4 HOH A 27 527 73 HOH HOH . D 4 HOH A 28 528 22 HOH HOH . D 4 HOH A 29 529 47 HOH HOH . D 4 HOH A 30 530 88 HOH HOH . D 4 HOH A 31 531 126 HOH HOH . D 4 HOH A 32 532 15 HOH HOH . D 4 HOH A 33 533 121 HOH HOH . D 4 HOH A 34 534 84 HOH HOH . D 4 HOH A 35 535 156 HOH HOH . D 4 HOH A 36 536 27 HOH HOH . D 4 HOH A 37 537 115 HOH HOH . D 4 HOH A 38 538 24 HOH HOH . D 4 HOH A 39 539 54 HOH HOH . D 4 HOH A 40 540 132 HOH HOH . D 4 HOH A 41 541 188 HOH HOH . D 4 HOH A 42 542 200 HOH HOH . D 4 HOH A 43 543 2 HOH HOH . D 4 HOH A 44 544 114 HOH HOH . D 4 HOH A 45 545 91 HOH HOH . D 4 HOH A 46 546 100 HOH HOH . D 4 HOH A 47 547 5 HOH HOH . D 4 HOH A 48 548 158 HOH HOH . D 4 HOH A 49 549 61 HOH HOH . D 4 HOH A 50 550 181 HOH HOH . D 4 HOH A 51 551 39 HOH HOH . D 4 HOH A 52 552 33 HOH HOH . D 4 HOH A 53 553 46 HOH HOH . D 4 HOH A 54 554 96 HOH HOH . D 4 HOH A 55 555 65 HOH HOH . D 4 HOH A 56 556 80 HOH HOH . D 4 HOH A 57 557 25 HOH HOH . D 4 HOH A 58 558 45 HOH HOH . D 4 HOH A 59 559 16 HOH HOH . D 4 HOH A 60 560 195 HOH HOH . D 4 HOH A 61 561 150 HOH HOH . D 4 HOH A 62 562 9 HOH HOH . D 4 HOH A 63 563 177 HOH HOH . D 4 HOH A 64 564 8 HOH HOH . D 4 HOH A 65 565 119 HOH HOH . D 4 HOH A 66 566 138 HOH HOH . D 4 HOH A 67 567 58 HOH HOH . D 4 HOH A 68 568 20 HOH HOH . D 4 HOH A 69 569 53 HOH HOH . D 4 HOH A 70 570 117 HOH HOH . D 4 HOH A 71 571 133 HOH HOH . D 4 HOH A 72 572 90 HOH HOH . D 4 HOH A 73 573 131 HOH HOH . D 4 HOH A 74 574 128 HOH HOH . D 4 HOH A 75 575 11 HOH HOH . D 4 HOH A 76 576 6 HOH HOH . D 4 HOH A 77 577 94 HOH HOH . D 4 HOH A 78 578 62 HOH HOH . D 4 HOH A 79 579 17 HOH HOH . D 4 HOH A 80 580 23 HOH HOH . D 4 HOH A 81 581 116 HOH HOH . D 4 HOH A 82 582 169 HOH HOH . D 4 HOH A 83 583 13 HOH HOH . D 4 HOH A 84 584 31 HOH HOH . D 4 HOH A 85 585 110 HOH HOH . D 4 HOH A 86 586 75 HOH HOH . D 4 HOH A 87 587 34 HOH HOH . D 4 HOH A 88 588 108 HOH HOH . D 4 HOH A 89 589 10 HOH HOH . D 4 HOH A 90 590 35 HOH HOH . D 4 HOH A 91 591 129 HOH HOH . D 4 HOH A 92 592 57 HOH HOH . D 4 HOH A 93 593 167 HOH HOH . D 4 HOH A 94 594 82 HOH HOH . D 4 HOH A 95 595 55 HOH HOH . D 4 HOH A 96 596 197 HOH HOH . D 4 HOH A 97 597 26 HOH HOH . D 4 HOH A 98 598 105 HOH HOH . D 4 HOH A 99 599 172 HOH HOH . D 4 HOH A 100 600 42 HOH HOH . D 4 HOH A 101 601 74 HOH HOH . D 4 HOH A 102 602 206 HOH HOH . D 4 HOH A 103 603 83 HOH HOH . D 4 HOH A 104 604 3 HOH HOH . D 4 HOH A 105 605 134 HOH HOH . D 4 HOH A 106 606 72 HOH HOH . D 4 HOH A 107 607 109 HOH HOH . D 4 HOH A 108 608 66 HOH HOH . D 4 HOH A 109 609 67 HOH HOH . D 4 HOH A 110 610 102 HOH HOH . D 4 HOH A 111 611 64 HOH HOH . D 4 HOH A 112 612 106 HOH HOH . D 4 HOH A 113 613 179 HOH HOH . D 4 HOH A 114 614 21 HOH HOH . D 4 HOH A 115 615 4 HOH HOH . D 4 HOH A 116 616 78 HOH HOH . D 4 HOH A 117 617 76 HOH HOH . D 4 HOH A 118 618 79 HOH HOH . D 4 HOH A 119 619 59 HOH HOH . D 4 HOH A 120 620 60 HOH HOH . D 4 HOH A 121 621 161 HOH HOH . D 4 HOH A 122 622 174 HOH HOH . D 4 HOH A 123 623 189 HOH HOH . D 4 HOH A 124 624 86 HOH HOH . D 4 HOH A 125 625 93 HOH HOH . D 4 HOH A 126 626 81 HOH HOH . D 4 HOH A 127 627 63 HOH HOH . D 4 HOH A 128 628 107 HOH HOH . D 4 HOH A 129 629 164 HOH HOH . D 4 HOH A 130 630 148 HOH HOH . D 4 HOH A 131 631 122 HOH HOH . D 4 HOH A 132 632 163 HOH HOH . D 4 HOH A 133 633 92 HOH HOH . D 4 HOH A 134 634 43 HOH HOH . D 4 HOH A 135 635 51 HOH HOH . D 4 HOH A 136 636 175 HOH HOH . D 4 HOH A 137 637 36 HOH HOH . D 4 HOH A 138 638 98 HOH HOH . D 4 HOH A 139 639 77 HOH HOH . D 4 HOH A 140 640 87 HOH HOH . D 4 HOH A 141 641 52 HOH HOH . D 4 HOH A 142 642 37 HOH HOH . D 4 HOH A 143 643 180 HOH HOH . D 4 HOH A 144 644 38 HOH HOH . D 4 HOH A 145 645 1 HOH HOH . D 4 HOH A 146 646 178 HOH HOH . D 4 HOH A 147 647 99 HOH HOH . D 4 HOH A 148 648 19 HOH HOH . D 4 HOH A 149 649 139 HOH HOH . D 4 HOH A 150 650 69 HOH HOH . D 4 HOH A 151 651 18 HOH HOH . D 4 HOH A 152 652 176 HOH HOH . D 4 HOH A 153 653 32 HOH HOH . D 4 HOH A 154 654 44 HOH HOH . D 4 HOH A 155 655 68 HOH HOH . D 4 HOH A 156 656 137 HOH HOH . D 4 HOH A 157 657 202 HOH HOH . D 4 HOH A 158 658 41 HOH HOH . D 4 HOH A 159 659 50 HOH HOH . D 4 HOH A 160 660 185 HOH HOH . D 4 HOH A 161 661 190 HOH HOH . D 4 HOH A 162 662 173 HOH HOH . D 4 HOH A 163 663 204 HOH HOH . D 4 HOH A 164 664 192 HOH HOH . D 4 HOH A 165 665 127 HOH HOH . D 4 HOH A 166 666 135 HOH HOH . D 4 HOH A 167 667 187 HOH HOH . D 4 HOH A 168 668 136 HOH HOH . D 4 HOH A 169 669 14 HOH HOH . D 4 HOH A 170 670 40 HOH HOH . D 4 HOH A 171 671 186 HOH HOH . D 4 HOH A 172 672 196 HOH HOH . D 4 HOH A 173 673 160 HOH HOH . D 4 HOH A 174 674 183 HOH HOH . D 4 HOH A 175 675 162 HOH HOH . D 4 HOH A 176 676 140 HOH HOH . D 4 HOH A 177 677 103 HOH HOH . D 4 HOH A 178 678 146 HOH HOH . D 4 HOH A 179 679 143 HOH HOH . D 4 HOH A 180 680 145 HOH HOH . D 4 HOH A 181 681 194 HOH HOH . D 4 HOH A 182 682 182 HOH HOH . D 4 HOH A 183 683 170 HOH HOH . D 4 HOH A 184 684 49 HOH HOH . D 4 HOH A 185 685 28 HOH HOH . D 4 HOH A 186 686 154 HOH HOH . D 4 HOH A 187 687 125 HOH HOH . D 4 HOH A 188 688 124 HOH HOH . D 4 HOH A 189 689 166 HOH HOH . D 4 HOH A 190 690 191 HOH HOH . D 4 HOH A 191 691 30 HOH HOH . D 4 HOH A 192 692 165 HOH HOH . D 4 HOH A 193 693 113 HOH HOH . D 4 HOH A 194 694 120 HOH HOH . D 4 HOH A 195 695 159 HOH HOH . D 4 HOH A 196 696 142 HOH HOH . D 4 HOH A 197 697 201 HOH HOH . D 4 HOH A 198 698 203 HOH HOH . D 4 HOH A 199 699 184 HOH HOH . D 4 HOH A 200 700 141 HOH HOH . D 4 HOH A 201 701 144 HOH HOH . D 4 HOH A 202 702 118 HOH HOH . D 4 HOH A 203 703 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SL7 . . . C 3 5.266 30.824 33.2 1 36.71 ? C1 SL7 402 A 1 HETATM 2 C C2 SL7 . . . C 3 2.974 30.679 32.383 1 34.2 ? C2 SL7 402 A 1 HETATM 3 C C3 SL7 . . . C 3 2.477 31.499 30.578 1 31.71 ? C3 SL7 402 A 1 HETATM 4 C C7 SL7 . . . C 3 2.849 33.703 26.961 1 27.01 ? C7 SL7 402 A 1 HETATM 5 C C8 SL7 . . . C 3 3.952 33.57 27.802 1 25.07 ? C8 SL7 402 A 1 HETATM 6 C C9 SL7 . . . C 3 5.303 34.181 27.51 1 23.24 ? C9 SL7 402 A 1 HETATM 7 C C10 SL7 . . . C 3 5.511 34.378 25.031 0.7 20.3 ? C10 SL7 402 A 1 HETATM 8 C C11 SL7 . . . C 3 5.41 32.993 24.847 1 19.79 ? C11 SL7 402 A 1 HETATM 9 C C12 SL7 . . . C 3 5.517 32.471 23.558 1 18.54 ? C12 SL7 402 A 1 HETATM 10 C C13 SL7 . . . C 3 5.721 33.347 22.479 1 19.09 ? C13 SL7 402 A 1 HETATM 11 C C14 SL7 . . . C 3 5.45 31.169 22.963 1 17.03 ? C14 SL7 402 A 1 HETATM 12 C C15 SL7 . . . C 3 5.225 29.842 23.562 1 17.17 ? C15 SL7 402 A 1 HETATM 13 C C16 SL7 . . . C 3 5.827 34.716 22.661 1 20.51 ? C16 SL7 402 A 1 HETATM 14 O O2 SL7 . . . C 3 5.112 28.853 22.839 1 15.53 ? O2 SL7 402 A 1 HETATM 15 O O1 SL7 . . . C 3 5.13 29.801 24.865 1 15.75 ? O1 SL7 402 A 1 HETATM 16 N N5 SL7 . . . C 3 5.596 31.248 21.64 1 18.23 ? N5 SL7 402 A 1 HETATM 17 N N4 SL7 . . . C 3 5.761 32.575 21.358 1 18.79 ? N4 SL7 402 A 1 HETATM 18 C C17 SL7 . . . C 3 5.712 35.222 23.941 1 20.39 ? C17 SL7 402 A 1 HETATM 19 N N3 SL7 . . . C 3 5.4 34.946 26.289 0.8 21.24 ? N3 SL7 402 A 1 HETATM 20 C C6 SL7 . . . C 3 1.636 33.099 27.272 1 26.75 ? C6 SL7 402 A 1 HETATM 21 C C5 SL7 . . . C 3 1.488 32.351 28.43 1 29.2 ? C5 SL7 402 A 1 HETATM 22 C C18 SL7 . . . C 3 3.795 32.827 28.971 1 26.86 ? C18 SL7 402 A 1 HETATM 23 O O3 SL7 . . . C 3 4.885 32.714 29.763 1 28.13 ? O3 SL7 402 A 1 HETATM 24 C C4 SL7 . . . C 3 2.567 32.216 29.302 1 29.32 ? C4 SL7 402 A 1 HETATM 25 O O SL7 . . . C 3 1.395 30.813 30.988 0.7 34.92 ? O SL7 402 A 1 HETATM 26 N N1 SL7 . . . C 3 1.752 30.246 32.258 1 35.16 ? N1 SL7 402 A 1 HETATM 27 N N2 SL7 . . . C 3 3.467 31.452 31.406 1 33.67 ? N2 SL7 402 A 1 HETATM 28 N N SL7 . . . C 3 3.874 30.436 33.347 1 36.31 ? N SL7 402 A 1 HETATM 29 C C SL7 . . . C 3 3.519 29.781 34.602 1 38.09 ? C SL7 402 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #