data_6W4E # _model_server_result.job_id 1wD6yMrevfcuVBum9NiP0g _model_server_result.datetime_utc '2025-01-18 07:30:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w4e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"RB","auth_seq_id":201}' # _entry.id 6W4E # _exptl.entry_id 6W4E _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 539.246 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 GB N N ? 5 RB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C OG1 THR 35 B THR 35 1_555 HB MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.737 ? metalc ? metalc2 D OG SER 17 C SER 17 1_555 SB MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.711 ? metalc ? metalc3 D OG1 THR 35 C THR 35 1_555 SB MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? metalc ? metalc4 RB O2B GSP . C GSP 201 1_555 SB MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? # _chem_comp.formula 'C10 H16 N5 O13 P3 S' _chem_comp.formula_weight 539.246 _chem_comp.id GSP _chem_comp.mon_nstd_flag . _chem_comp.name "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O3B GSP sing 260 n n PG S1G GSP doub 261 n n PG O2G GSP sing 262 n n PG O3G GSP sing 263 n n O3B PB GSP sing 264 n n O2G HOG2 GSP sing 265 n n O3G HOG3 GSP sing 266 n n PB O1B GSP doub 267 n n PB O2B GSP sing 268 n n PB O3A GSP sing 269 n n O2B HOB2 GSP sing 270 n n PA O1A GSP doub 271 n n PA O2A GSP sing 272 n n PA O3A GSP sing 273 n n PA O5' GSP sing 274 n n O2A HOA2 GSP sing 275 n n O5' C5' GSP sing 276 n n C5' C4' GSP sing 277 n n C5' "H5'1" GSP sing 278 n n C5' "H5'2" GSP sing 279 n n C4' O4' GSP sing 280 n n C4' C3' GSP sing 281 n n C4' H4' GSP sing 282 n n O4' C1' GSP sing 283 n n C3' O3' GSP sing 284 n n C3' C2' GSP sing 285 n n C3' H3' GSP sing 286 n n O3' HO3' GSP sing 287 n n C2' O2' GSP sing 288 n n C2' C1' GSP sing 289 n n C2' H2' GSP sing 290 n n O2' HO2' GSP sing 291 n n C1' N9 GSP sing 292 n n C1' H1' GSP sing 293 n n N9 C8 GSP sing 294 n y N9 C4 GSP sing 295 n y C8 N7 GSP doub 296 n y C8 H8 GSP sing 297 n n N7 C5 GSP sing 298 n y C5 C6 GSP sing 299 n n C5 C4 GSP doub 300 n y C6 O6 GSP doub 301 n n C6 N1 GSP sing 302 n n N1 C2 GSP sing 303 n n N1 HN1 GSP sing 304 n n C2 N2 GSP sing 305 n n C2 N3 GSP doub 306 n n N2 HN21 GSP sing 307 n n N2 HN22 GSP sing 308 n n N3 C4 GSP sing 309 n n # _atom_sites.entry_id 6W4E _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 PCW A 1 401 2 PCW PCW . F 3 PCW A 1 402 3 PCW PCW . G 3 PCW A 1 403 4 PCW PCW . H 3 PCW A 1 404 7 PCW PCW . I 3 PCW A 1 405 15 PCW PCW . J 3 PCW A 1 406 16 PCW PCW . K 3 PCW A 1 407 19 PCW PCW . L 3 PCW A 1 408 20 PCW PCW . M 3 PCW A 1 409 21 PCW PCW . N 3 PCW A 1 410 23 PCW PCW . O 3 PCW A 1 411 24 PCW PCW . P 3 PCW A 1 412 29 PCW PCW . Q 3 PCW A 1 413 31 PCW PCW . R 3 PCW A 1 414 32 PCW PCW . S 4 17F A 1 415 33 17F 17F . T 4 17F A 1 416 38 17F 17F . U 3 PCW A 1 417 41 PCW PCW . V 3 PCW A 1 418 48 PCW PCW . W 3 PCW A 1 419 51 PCW PCW . X 3 PCW A 1 420 58 PCW PCW . Y 3 PCW A 1 421 59 PCW PCW . Z 4 17F A 1 422 79 17F 17F . AA 3 PCW D 1 601 8 PCW PCW . BA 3 PCW D 1 602 27 PCW PCW . CA 3 PCW D 1 603 42 PCW PCW . DA 3 PCW D 1 604 43 PCW PCW . EA 3 PCW D 1 605 44 PCW PCW . FA 3 PCW D 1 606 45 PCW PCW . GA 3 PCW D 1 607 46 PCW PCW . HA 3 PCW D 1 608 47 PCW PCW . IA 3 PCW D 1 609 49 PCW PCW . JA 3 PCW D 1 610 50 PCW PCW . KA 3 PCW D 1 611 52 PCW PCW . LA 3 PCW D 1 612 53 PCW PCW . MA 3 PCW D 1 613 54 PCW PCW . NA 3 PCW D 1 614 55 PCW PCW . OA 3 PCW D 1 615 56 PCW PCW . PA 3 PCW D 1 616 57 PCW PCW . QA 3 PCW D 1 617 60 PCW PCW . RA 3 PCW D 1 618 61 PCW PCW . SA 3 PCW D 1 619 62 PCW PCW . TA 3 PCW D 1 620 64 PCW PCW . UA 3 PCW D 1 621 65 PCW PCW . VA 3 PCW D 1 622 66 PCW PCW . WA 3 PCW D 1 623 68 PCW PCW . XA 3 PCW D 1 624 69 PCW PCW . YA 3 PCW D 1 625 70 PCW PCW . ZA 3 PCW D 1 626 71 PCW PCW . AB 3 PCW D 1 627 72 PCW PCW . BB 4 17F D 1 628 73 17F 17F . CB 4 17F D 1 629 76 17F 17F . DB 4 17F D 1 630 77 17F 17F . EB 4 17F D 1 631 78 17F 17F . FB 4 17F D 1 632 80 17F 17F . GB 5 GSP B 1 201 201 GSP GSP . HB 6 MG B 1 202 202 MG MG . IB 3 PCW B 1 203 1 PCW PCW . JB 3 PCW B 1 204 5 PCW PCW . KB 3 PCW B 1 205 6 PCW PCW . LB 3 PCW B 1 206 10 PCW PCW . MB 3 PCW B 1 207 17 PCW PCW . NB 3 PCW B 1 208 28 PCW PCW . OB 4 17F B 1 209 35 17F 17F . PB 4 17F B 1 210 36 17F 17F . QB 4 17F B 1 211 39 17F 17F . RB 5 GSP C 1 201 201 GSP GSP . SB 6 MG C 1 202 202 MG MG . TB 3 PCW C 1 203 9 PCW PCW . UB 3 PCW C 1 204 11 PCW PCW . VB 3 PCW C 1 205 12 PCW PCW . WB 3 PCW C 1 206 13 PCW PCW . XB 3 PCW C 1 207 14 PCW PCW . YB 3 PCW C 1 208 18 PCW PCW . ZB 3 PCW C 1 209 22 PCW PCW . AC 3 PCW C 1 210 25 PCW PCW . BC 3 PCW C 1 211 26 PCW PCW . CC 3 PCW C 1 212 30 PCW PCW . DC 4 17F C 1 213 34 17F 17F . EC 4 17F C 1 214 37 17F 17F . FC 4 17F C 1 215 40 17F 17F . GC 3 PCW C 1 216 63 PCW PCW . HC 3 PCW C 1 217 67 PCW PCW . IC 4 17F C 1 218 74 17F 17F . JC 4 17F C 1 219 75 17F 17F . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GSP . . . RB 5 -54.345 -7.356 -1.967 1 10 ? PG GSP 201 C 1 HETATM 2 O O3B GSP . . . RB 5 -53.914 -8.792 -2.55 1 10 ? O3B GSP 201 C 1 HETATM 3 S S1G GSP . . . RB 5 -56.153 -7.155 -2.623 1 10 ? S1G GSP 201 C 1 HETATM 4 O O2G GSP . . . RB 5 -53.478 -6.327 -2.583 1 10 ? O2G GSP 201 C 1 HETATM 5 O O3G GSP . . . RB 5 -54.374 -7.453 -0.488 1 10 ? O3G GSP 201 C 1 HETATM 6 P PB GSP . . . RB 5 -53.541 -10.002 -1.554 1 10 ? PB GSP 201 C 1 HETATM 7 O O1B GSP . . . RB 5 -52.418 -10.774 -2.132 1 10 -1 O1B GSP 201 C 1 HETATM 8 O O2B GSP . . . RB 5 -53.388 -9.457 -0.187 1 10 ? O2B GSP 201 C 1 HETATM 9 P PA GSP . . . RB 5 -55.143 -11.99 -0.402 1 10 ? PA GSP 201 C 1 HETATM 10 O O1A GSP . . . RB 5 -54.049 -11.931 0.592 1 10 -1 O1A GSP 201 C 1 HETATM 11 O O2A GSP . . . RB 5 -56.535 -11.826 0.074 1 10 ? O2A GSP 201 C 1 HETATM 12 O O3A GSP . . . RB 5 -54.86 -10.924 -1.574 1 10 ? O3A GSP 201 C 1 HETATM 13 O O5' GSP . . . RB 5 -55.06 -13.405 -1.162 1 10 ? O5' GSP 201 C 1 HETATM 14 C C5' GSP . . . RB 5 -55.625 -13.538 -2.47 1 10 ? C5' GSP 201 C 1 HETATM 15 C C4' GSP . . . RB 5 -55.918 -15.003 -2.812 1 10 ? C4' GSP 201 C 1 HETATM 16 O O4' GSP . . . RB 5 -54.678 -15.731 -2.701 1 10 ? O4' GSP 201 C 1 HETATM 17 C C3' GSP . . . RB 5 -56.863 -15.601 -1.767 1 10 ? C3' GSP 201 C 1 HETATM 18 O O3' GSP . . . RB 5 -57.592 -16.708 -2.309 1 10 ? O3' GSP 201 C 1 HETATM 19 C C2' GSP . . . RB 5 -55.863 -16.105 -0.729 1 10 ? C2' GSP 201 C 1 HETATM 20 O O2' GSP . . . RB 5 -56.442 -17.12 0.098 1 10 ? O2' GSP 201 C 1 HETATM 21 C C1' GSP . . . RB 5 -54.87 -16.742 -1.699 1 10 ? C1' GSP 201 C 1 HETATM 22 N N9 GSP . . . RB 5 -53.606 -17.167 -1.056 1 10 ? N9 GSP 201 C 1 HETATM 23 C C8 GSP . . . RB 5 -52.792 -16.398 -0.338 1 10 ? C8 GSP 201 C 1 HETATM 24 N N7 GSP . . . RB 5 -51.751 -17.116 0.08 1 10 ? N7 GSP 201 C 1 HETATM 25 C C5 GSP . . . RB 5 -51.902 -18.357 -0.373 1 10 ? C5 GSP 201 C 1 HETATM 26 C C6 GSP . . . RB 5 -51.138 -19.514 -0.249 1 10 ? C6 GSP 201 C 1 HETATM 27 O O6 GSP . . . RB 5 -50.076 -19.507 0.372 1 10 ? O6 GSP 201 C 1 HETATM 28 N N1 GSP . . . RB 5 -51.592 -20.686 -0.866 1 10 ? N1 GSP 201 C 1 HETATM 29 C C2 GSP . . . RB 5 -52.796 -20.658 -1.583 1 10 ? C2 GSP 201 C 1 HETATM 30 N N2 GSP . . . RB 5 -53.238 -21.768 -2.169 1 10 ? N2 GSP 201 C 1 HETATM 31 N N3 GSP . . . RB 5 -53.513 -19.527 -1.676 1 10 ? N3 GSP 201 C 1 HETATM 32 C C4 GSP . . . RB 5 -53.091 -18.395 -1.098 1 10 ? C4 GSP 201 C 1 HETATM 33 H HO3' GSP . . . RB 5 -56.952 -17.347 -2.736 1 10 ? HO3' GSP 201 C 1 HETATM 34 H HO2' GSP . . . RB 5 -57.011 -17.724 -0.46 1 10 ? HO2' GSP 201 C 1 HETATM 35 H HN1 GSP . . . RB 5 -51.065 -21.533 -0.795 1 10 ? HN1 GSP 201 C 1 HETATM 36 H HN21 GSP . . . RB 5 -52.712 -22.616 -2.09 1 10 ? HN21 GSP 201 C 1 HETATM 37 H HN22 GSP . . . RB 5 -54.103 -21.76 -2.672 1 10 ? HN22 GSP 201 C 1 HETATM 38 H HAC GSP . . . RB 5 -55.817 -6.629 -3.798 1 10 ? HAC GSP 201 C 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 267 _model_server_stats.query_time_ms 6218 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 38 #