data_6W4K # _model_server_result.job_id RQFXKo7tpDgQ9ThAn4tXGg _model_server_result.datetime_utc '2024-10-16 11:24:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w4k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 6W4K # _exptl.entry_id 6W4K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 451.469 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[2-(4-aminopiperidin-1-yl)-5-(3-fluoro-4-methoxyphenyl)-1-methyl-6-oxo-1,6-dihydropyrimidin-4-yl]-2-fluorobenzonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6W4K _cell.length_a 121.655 _cell.length_b 178.51 _cell.length_c 236.049 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W4K _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H23 F2 N5 O2' _chem_comp.formula_weight 451.469 _chem_comp.id V0Y _chem_comp.mon_nstd_flag . _chem_comp.name 4-[2-(4-aminopiperidin-1-yl)-5-(3-fluoro-4-methoxyphenyl)-1-methyl-6-oxo-1,6-dihydropyrimidin-4-yl]-2-fluorobenzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 C24 V0Y sing 449 n n O23 C19 V0Y sing 450 n n N15 C14 V0Y trip 451 n n C20 C19 V0Y doub 452 n y C20 C21 V0Y sing 453 n y C14 C10 V0Y sing 454 n n C19 C18 V0Y sing 455 n y F13 C11 V0Y sing 456 n n C21 C16 V0Y doub 457 n y C10 C11 V0Y doub 458 n y C10 C9 V0Y sing 459 n y C11 C12 V0Y sing 460 n y C9 C8 V0Y doub 461 n y C18 F22 V0Y sing 462 n n C18 C17 V0Y doub 463 n y C12 C7 V0Y doub 464 n y C8 C7 V0Y sing 465 n y C16 C17 V0Y sing 466 n y C16 C5 V0Y sing 467 n n C7 C6 V0Y sing 468 n n C5 C6 V0Y doub 469 n n C5 C4 V0Y sing 470 n n C6 N1 V0Y sing 471 n n O25 C4 V0Y doub 472 n n C4 N3 V0Y sing 473 n n N1 C2 V0Y doub 474 n n N3 C2 V0Y sing 475 n n N3 C26 V0Y sing 476 n n C2 N27 V0Y sing 477 n n C32 N27 V0Y sing 478 n n C32 C31 V0Y sing 479 n n N27 C28 V0Y sing 480 n n C31 C30 V0Y sing 481 n n C28 C29 V0Y sing 482 n n C30 C29 V0Y sing 483 n n C30 N33 V0Y sing 484 n n C12 H1 V0Y sing 485 n n C9 H2 V0Y sing 486 n n C8 H3 V0Y sing 487 n n C17 H4 V0Y sing 488 n n C24 H5 V0Y sing 489 n n C24 H6 V0Y sing 490 n n C24 H7 V0Y sing 491 n n C20 H8 V0Y sing 492 n n C21 H9 V0Y sing 493 n n C26 H10 V0Y sing 494 n n C26 H11 V0Y sing 495 n n C26 H12 V0Y sing 496 n n C28 H13 V0Y sing 497 n n C28 H14 V0Y sing 498 n n C29 H15 V0Y sing 499 n n C29 H16 V0Y sing 500 n n C30 H17 V0Y sing 501 n n N33 H18 V0Y sing 502 n n N33 H19 V0Y sing 503 n n C31 H21 V0Y sing 504 n n C31 H22 V0Y sing 505 n n C32 H23 V0Y sing 506 n n C32 H24 V0Y sing 507 n n # _atom_sites.entry_id 6W4K _atom_sites.fract_transf_matrix[1][1] 0.00822 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005602 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004236 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 V0Y A 1 901 1 V0Y lig . D 4 FAD A 1 902 900 FAD FAD . E 5 HOH A 1 1001 2 HOH HOH . E 5 HOH A 2 1002 14 HOH HOH . E 5 HOH A 3 1003 10 HOH HOH . E 5 HOH A 4 1004 3 HOH HOH . E 5 HOH A 5 1005 7 HOH HOH . E 5 HOH A 6 1006 1 HOH HOH . E 5 HOH A 7 1007 5 HOH HOH . E 5 HOH A 8 1008 9 HOH HOH . E 5 HOH A 9 1009 18 HOH HOH . E 5 HOH A 10 1010 13 HOH HOH . E 5 HOH A 11 1011 4 HOH HOH . E 5 HOH A 12 1012 15 HOH HOH . E 5 HOH A 13 1013 24 HOH HOH . E 5 HOH A 14 1014 25 HOH HOH . E 5 HOH A 15 1015 11 HOH HOH . E 5 HOH A 16 1016 6 HOH HOH . E 5 HOH A 17 1017 23 HOH HOH . E 5 HOH A 18 1018 21 HOH HOH . E 5 HOH A 19 1019 26 HOH HOH . E 5 HOH A 20 1020 27 HOH HOH . E 5 HOH A 21 1021 19 HOH HOH . E 5 HOH A 22 1022 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N15 V0Y . . . C 3 -68.898 -31.849 -39.264 1 65.49 ? N15 V0Y 901 A 1 HETATM 2 C C14 V0Y . . . C 3 -68.473 -32.572 -38.437 1 73.88 ? C14 V0Y 901 A 1 HETATM 3 C C10 V0Y . . . C 3 -67.977 -33.497 -37.654 1 67.46 ? C10 V0Y 901 A 1 HETATM 4 C C11 V0Y . . . C 3 -68.812 -34.561 -37.347 1 59.68 ? C11 V0Y 901 A 1 HETATM 5 F F13 V0Y . . . C 3 -70.065 -34.426 -37.834 1 72.63 ? F13 V0Y 901 A 1 HETATM 6 C C12 V0Y . . . C 3 -68.412 -35.622 -36.526 1 51.53 ? C12 V0Y 901 A 1 HETATM 7 C C9 V0Y . . . C 3 -66.657 -33.492 -37.206 1 63.14 ? C9 V0Y 901 A 1 HETATM 8 C C8 V0Y . . . C 3 -66.219 -34.569 -36.438 1 64.42 ? C8 V0Y 901 A 1 HETATM 9 C C7 V0Y . . . C 3 -67.085 -35.615 -36.057 1 64.29 ? C7 V0Y 901 A 1 HETATM 10 C C6 V0Y . . . C 3 -66.39 -36.679 -35.253 1 72.62 ? C6 V0Y 901 A 1 HETATM 11 C C5 V0Y . . . C 3 -66.602 -38.108 -35.424 1 76.06 ? C5 V0Y 901 A 1 HETATM 12 C C16 V0Y . . . C 3 -67.646 -38.728 -36.365 1 78.51 ? C16 V0Y 901 A 1 HETATM 13 C C17 V0Y . . . C 3 -68.811 -39.426 -36.03 1 92.04 ? C17 V0Y 901 A 1 HETATM 14 C C18 V0Y . . . C 3 -69.735 -39.893 -37 1 93.99 ? C18 V0Y 901 A 1 HETATM 15 F F22 V0Y . . . C 3 -70.875 -40.563 -36.645 1 87.09 ? F22 V0Y 901 A 1 HETATM 16 C C19 V0Y . . . C 3 -69.468 -39.632 -38.33 1 84.58 ? C19 V0Y 901 A 1 HETATM 17 O O23 V0Y . . . C 3 -70.221 -39.989 -39.396 1 81.3 ? O23 V0Y 901 A 1 HETATM 18 C C24 V0Y . . . C 3 -70.707 -41.326 -39.345 1 106.38 ? C24 V0Y 901 A 1 HETATM 19 C C20 V0Y . . . C 3 -68.345 -38.991 -38.661 1 78.57 ? C20 V0Y 901 A 1 HETATM 20 C C21 V0Y . . . C 3 -67.458 -38.554 -37.707 1 82.7 ? C21 V0Y 901 A 1 HETATM 21 C C4 V0Y . . . C 3 -65.803 -38.929 -34.663 1 73.24 ? C4 V0Y 901 A 1 HETATM 22 O O25 V0Y . . . C 3 -65.968 -40.167 -34.713 1 76.46 ? O25 V0Y 901 A 1 HETATM 23 N N1 V0Y . . . C 3 -65.432 -36.156 -34.423 1 67.84 ? N1 V0Y 901 A 1 HETATM 24 C C2 V0Y . . . C 3 -64.674 -36.976 -33.651 1 74.47 ? C2 V0Y 901 A 1 HETATM 25 N N3 V0Y . . . C 3 -64.831 -38.368 -33.809 1 76.3 ? N3 V0Y 901 A 1 HETATM 26 C C26 V0Y . . . C 3 -63.987 -39.236 -32.995 1 80.97 ? C26 V0Y 901 A 1 HETATM 27 N N27 V0Y . . . C 3 -63.653 -36.557 -32.732 1 63.41 ? N27 V0Y 901 A 1 HETATM 28 C C28 V0Y . . . C 3 -63.693 -36.929 -31.372 1 52.41 ? C28 V0Y 901 A 1 HETATM 29 C C29 V0Y . . . C 3 -62.282 -36.991 -30.796 1 52.57 ? C29 V0Y 901 A 1 HETATM 30 C C30 V0Y . . . C 3 -61.515 -35.689 -30.982 1 69.5 ? C30 V0Y 901 A 1 HETATM 31 N N33 V0Y . . . C 3 -60.196 -35.814 -30.766 1 79.1 ? N33 V0Y 901 A 1 HETATM 32 C C31 V0Y . . . C 3 -61.753 -35.123 -32.361 1 73.15 ? C31 V0Y 901 A 1 HETATM 33 C C32 V0Y . . . C 3 -63.196 -35.251 -32.852 1 70.15 ? C32 V0Y 901 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #