data_6W4V # _model_server_result.job_id 5Bm-ocI_OGdiCp-WS_IJnw _model_server_result.datetime_utc '2024-11-04 22:34:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w4v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6W4V # _exptl.entry_id 6W4V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.989 _cell.angle_gamma 90 _cell.entry_id 6W4V _cell.length_a 73.097 _cell.length_b 36.907 _cell.length_c 86.514 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W4V _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 D CYS 23 1_555 A SG CYS 92 D CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 138 D CYS 138 1_555 A SG CYS 198 D CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 A SG CYS 218 D CYS 218 1_555 B SG CYS 133 C CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 B SG CYS 22 C CYS 22 1_555 B SG CYS 95 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 B SG CYS 145 C CYS 145 1_555 B SG CYS 200 C CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6W4V _atom_sites.fract_transf_matrix[1][1] 0.01368 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005804 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027095 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012556 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO D 1 301 200 EDO EDO . D 3 EDO D 1 302 201 EDO EDO . E 3 EDO D 1 303 203 EDO EDO . F 3 EDO D 1 304 204 EDO EDO . G 3 EDO C 1 301 202 EDO EDO . H 4 HOH D 1 401 114 HOH HOH . H 4 HOH D 2 402 83 HOH HOH . H 4 HOH D 3 403 121 HOH HOH . H 4 HOH D 4 404 37 HOH HOH . H 4 HOH D 5 405 132 HOH HOH . H 4 HOH D 6 406 107 HOH HOH . H 4 HOH D 7 407 72 HOH HOH . H 4 HOH D 8 408 25 HOH HOH . H 4 HOH D 9 409 11 HOH HOH . H 4 HOH D 10 410 52 HOH HOH . H 4 HOH D 11 411 31 HOH HOH . H 4 HOH D 12 412 106 HOH HOH . H 4 HOH D 13 413 8 HOH HOH . H 4 HOH D 14 414 33 HOH HOH . H 4 HOH D 15 415 85 HOH HOH . H 4 HOH D 16 416 109 HOH HOH . H 4 HOH D 17 417 39 HOH HOH . H 4 HOH D 18 418 15 HOH HOH . H 4 HOH D 19 419 10 HOH HOH . H 4 HOH D 20 420 1 HOH HOH . H 4 HOH D 21 421 89 HOH HOH . H 4 HOH D 22 422 76 HOH HOH . H 4 HOH D 23 423 48 HOH HOH . H 4 HOH D 24 424 20 HOH HOH . H 4 HOH D 25 425 101 HOH HOH . H 4 HOH D 26 426 42 HOH HOH . H 4 HOH D 27 427 24 HOH HOH . H 4 HOH D 28 428 21 HOH HOH . H 4 HOH D 29 429 81 HOH HOH . H 4 HOH D 30 430 62 HOH HOH . H 4 HOH D 31 431 66 HOH HOH . H 4 HOH D 32 432 4 HOH HOH . H 4 HOH D 33 433 131 HOH HOH . H 4 HOH D 34 434 67 HOH HOH . H 4 HOH D 35 435 18 HOH HOH . H 4 HOH D 36 436 6 HOH HOH . H 4 HOH D 37 437 30 HOH HOH . H 4 HOH D 38 438 58 HOH HOH . H 4 HOH D 39 439 38 HOH HOH . H 4 HOH D 40 440 27 HOH HOH . H 4 HOH D 41 441 119 HOH HOH . H 4 HOH D 42 442 49 HOH HOH . H 4 HOH D 43 443 35 HOH HOH . H 4 HOH D 44 444 19 HOH HOH . H 4 HOH D 45 445 90 HOH HOH . H 4 HOH D 46 446 92 HOH HOH . H 4 HOH D 47 447 82 HOH HOH . H 4 HOH D 48 448 118 HOH HOH . H 4 HOH D 49 449 117 HOH HOH . H 4 HOH D 50 450 130 HOH HOH . H 4 HOH D 51 451 78 HOH HOH . I 4 HOH C 1 401 102 HOH HOH . I 4 HOH C 2 402 111 HOH HOH . I 4 HOH C 3 403 63 HOH HOH . I 4 HOH C 4 404 44 HOH HOH . I 4 HOH C 5 405 22 HOH HOH . I 4 HOH C 6 406 56 HOH HOH . I 4 HOH C 7 407 26 HOH HOH . I 4 HOH C 8 408 74 HOH HOH . I 4 HOH C 9 409 34 HOH HOH . I 4 HOH C 10 410 116 HOH HOH . I 4 HOH C 11 411 36 HOH HOH . I 4 HOH C 12 412 12 HOH HOH . I 4 HOH C 13 413 93 HOH HOH . I 4 HOH C 14 414 32 HOH HOH . I 4 HOH C 15 415 65 HOH HOH . I 4 HOH C 16 416 46 HOH HOH . I 4 HOH C 17 417 23 HOH HOH . I 4 HOH C 18 418 84 HOH HOH . I 4 HOH C 19 419 79 HOH HOH . I 4 HOH C 20 420 99 HOH HOH . I 4 HOH C 21 421 28 HOH HOH . I 4 HOH C 22 422 13 HOH HOH . I 4 HOH C 23 423 112 HOH HOH . I 4 HOH C 24 424 64 HOH HOH . I 4 HOH C 25 425 14 HOH HOH . I 4 HOH C 26 426 115 HOH HOH . I 4 HOH C 27 427 128 HOH HOH . I 4 HOH C 28 428 57 HOH HOH . I 4 HOH C 29 429 45 HOH HOH . I 4 HOH C 30 430 2 HOH HOH . I 4 HOH C 31 431 129 HOH HOH . I 4 HOH C 32 432 29 HOH HOH . I 4 HOH C 33 433 68 HOH HOH . I 4 HOH C 34 434 47 HOH HOH . I 4 HOH C 35 435 108 HOH HOH . I 4 HOH C 36 436 105 HOH HOH . I 4 HOH C 37 437 9 HOH HOH . I 4 HOH C 38 438 59 HOH HOH . I 4 HOH C 39 439 40 HOH HOH . I 4 HOH C 40 440 17 HOH HOH . I 4 HOH C 41 441 80 HOH HOH . I 4 HOH C 42 442 43 HOH HOH . I 4 HOH C 43 443 127 HOH HOH . I 4 HOH C 44 444 88 HOH HOH . I 4 HOH C 45 445 73 HOH HOH . I 4 HOH C 46 446 51 HOH HOH . I 4 HOH C 47 447 5 HOH HOH . I 4 HOH C 48 448 75 HOH HOH . I 4 HOH C 49 449 7 HOH HOH . I 4 HOH C 50 450 3 HOH HOH . I 4 HOH C 51 451 55 HOH HOH . I 4 HOH C 52 452 94 HOH HOH . I 4 HOH C 53 453 41 HOH HOH . I 4 HOH C 54 454 16 HOH HOH . I 4 HOH C 55 455 61 HOH HOH . I 4 HOH C 56 456 103 HOH HOH . I 4 HOH C 57 457 95 HOH HOH . I 4 HOH C 58 458 69 HOH HOH . I 4 HOH C 59 459 126 HOH HOH . I 4 HOH C 60 460 87 HOH HOH . I 4 HOH C 61 461 91 HOH HOH . I 4 HOH C 62 462 96 HOH HOH . I 4 HOH C 63 463 120 HOH HOH . I 4 HOH C 64 464 113 HOH HOH . I 4 HOH C 65 465 86 HOH HOH . I 4 HOH C 66 466 133 HOH HOH . I 4 HOH C 67 467 104 HOH HOH . I 4 HOH C 68 468 50 HOH HOH . I 4 HOH C 69 469 122 HOH HOH . I 4 HOH C 70 470 71 HOH HOH . I 4 HOH C 71 471 77 HOH HOH . I 4 HOH C 72 472 125 HOH HOH . I 4 HOH C 73 473 124 HOH HOH . I 4 HOH C 74 474 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 4.226 -10.042 35.495 1 88.99 ? C1 EDO 301 D 1 HETATM 2 O O1 EDO . . . C 3 5.363 -9.405 34.9 1 88.36 ? O1 EDO 301 D 1 HETATM 3 C C2 EDO . . . C 3 3.038 -9.974 34.543 1 89.23 ? C2 EDO 301 D 1 HETATM 4 O O2 EDO . . . C 3 3.357 -10.646 33.32 1 88.61 ? O2 EDO 301 D 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #