data_6W5J # _model_server_result.job_id WbhGmMODrMnr2x3MDnFN8A _model_server_result.datetime_utc '2025-02-05 12:59:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w5j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6W5J # _exptl.entry_id 6W5J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 554.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(3-chlorophenyl)-2-methylpropyl [(2S)-3-cyclohexyl-1-({(1R,2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]-1-sulfanylpropan-2-yl}amino)-1-oxopropan-2-yl]carbamate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.6 _cell.angle_gamma 90 _cell.entry_id 6W5J _cell.length_a 37.469 _cell.length_b 34.986 _cell.length_c 111.473 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W5J _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 145 A CYS 139 1_555 C C25 TKS . A TKS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? covale ? covale2 B SG CYS 145 B CYS 139 1_555 D C25 TKS . B TKS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.805 ? # _chem_comp.formula 'C27 H40 Cl N3 O5 S' _chem_comp.formula_weight 554.142 _chem_comp.id TKS _chem_comp.mon_nstd_flag . _chem_comp.name '2-(3-chlorophenyl)-2-methylpropyl [(2S)-3-cyclohexyl-1-({(1R,2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]-1-sulfanylpropan-2-yl}amino)-1-oxopropan-2-yl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C35 C36 TKS doub 306 n y C35 C34 TKS sing 307 n y C11 C12 TKS sing 308 n n C11 C10 TKS sing 309 n n C36 C30 TKS sing 310 n y C12 C13 TKS sing 311 n n C34 C32 TKS doub 312 n y C01 C02 TKS sing 313 n n C10 C09 TKS sing 314 n n C13 C14 TKS sing 315 n n C30 C02 TKS sing 316 n n C30 C31 TKS doub 317 n y C02 C29 TKS sing 318 n n C02 C03 TKS sing 319 n n C09 C14 TKS sing 320 n n C09 C08 TKS sing 321 n n C32 C31 TKS sing 322 n y C32 CL3 TKS sing 323 n n O04 C03 TKS sing 324 n n O04 C05 TKS sing 325 n n N06 C05 TKS sing 326 n n N06 C07 TKS sing 327 n n C08 C07 TKS sing 328 n n C05 O28 TKS doub 329 n n C07 C15 TKS sing 330 n n O27 C15 TKS doub 331 n n C15 N16 TKS sing 332 n n N16 C17 TKS sing 333 n n O26 C25 TKS sing 334 n n C23 C22 TKS sing 335 n n C23 C19 TKS sing 336 n n C17 C25 TKS sing 337 n n C17 C18 TKS sing 338 n n C22 N21 TKS sing 339 n n C19 C18 TKS sing 340 n n C19 C20 TKS sing 341 n n N21 C20 TKS sing 342 n n C20 O24 TKS doub 343 n n C25 S1 TKS sing 344 n n C10 H1 TKS sing 345 n n C10 H2 TKS sing 346 n n C12 H3 TKS sing 347 n n C12 H4 TKS sing 348 n n C13 H5 TKS sing 349 n n C13 H6 TKS sing 350 n n C11 H7 TKS sing 351 n n C11 H8 TKS sing 352 n n C14 H9 TKS sing 353 n n C14 H10 TKS sing 354 n n C17 H11 TKS sing 355 n n C18 H12 TKS sing 356 n n C18 H13 TKS sing 357 n n C22 H14 TKS sing 358 n n C22 H15 TKS sing 359 n n C23 H16 TKS sing 360 n n C23 H17 TKS sing 361 n n C25 H18 TKS sing 362 n n C29 H19 TKS sing 363 n n C29 H20 TKS sing 364 n n C29 H21 TKS sing 365 n n C01 H22 TKS sing 366 n n C01 H23 TKS sing 367 n n C01 H24 TKS sing 368 n n C03 H25 TKS sing 369 n n C03 H26 TKS sing 370 n n C07 H27 TKS sing 371 n n C08 H28 TKS sing 372 n n C08 H29 TKS sing 373 n n C09 H30 TKS sing 374 n n C19 H31 TKS sing 375 n n C31 H32 TKS sing 376 n n C34 H33 TKS sing 377 n n C35 H34 TKS sing 378 n n C36 H35 TKS sing 379 n n N06 H36 TKS sing 380 n n N16 H37 TKS sing 381 n n N21 H38 TKS sing 382 n n O26 H39 TKS sing 383 n n S1 H40 TKS sing 384 n n # _atom_sites.entry_id 6W5J _atom_sites.fract_transf_matrix[1][1] 0.026689 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003561 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028583 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00905 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TKS A 1 201 1 TKS A17 . D 2 TKS B 1 201 2 TKS A17 . E 3 HOH A 1 301 100 HOH HOH . E 3 HOH A 2 302 59 HOH HOH . E 3 HOH A 3 303 18 HOH HOH . E 3 HOH A 4 304 24 HOH HOH . E 3 HOH A 5 305 32 HOH HOH . E 3 HOH A 6 306 13 HOH HOH . E 3 HOH A 7 307 17 HOH HOH . E 3 HOH A 8 308 20 HOH HOH . E 3 HOH A 9 309 12 HOH HOH . E 3 HOH A 10 310 62 HOH HOH . E 3 HOH A 11 311 82 HOH HOH . E 3 HOH A 12 312 67 HOH HOH . E 3 HOH A 13 313 16 HOH HOH . E 3 HOH A 14 314 31 HOH HOH . E 3 HOH A 15 315 44 HOH HOH . E 3 HOH A 16 316 45 HOH HOH . E 3 HOH A 17 317 64 HOH HOH . E 3 HOH A 18 318 69 HOH HOH . E 3 HOH A 19 319 72 HOH HOH . E 3 HOH A 20 320 28 HOH HOH . E 3 HOH A 21 321 4 HOH HOH . E 3 HOH A 22 322 34 HOH HOH . E 3 HOH A 23 323 80 HOH HOH . E 3 HOH A 24 324 22 HOH HOH . E 3 HOH A 25 325 77 HOH HOH . E 3 HOH A 26 326 35 HOH HOH . E 3 HOH A 27 327 26 HOH HOH . E 3 HOH A 28 328 92 HOH HOH . E 3 HOH A 29 329 63 HOH HOH . E 3 HOH A 30 330 30 HOH HOH . E 3 HOH A 31 331 107 HOH HOH . E 3 HOH A 32 332 5 HOH HOH . E 3 HOH A 33 333 42 HOH HOH . E 3 HOH A 34 334 93 HOH HOH . E 3 HOH A 35 335 104 HOH HOH . E 3 HOH A 36 336 70 HOH HOH . E 3 HOH A 37 337 39 HOH HOH . E 3 HOH A 38 338 15 HOH HOH . E 3 HOH A 39 339 53 HOH HOH . E 3 HOH A 40 340 56 HOH HOH . E 3 HOH A 41 341 33 HOH HOH . E 3 HOH A 42 342 10 HOH HOH . E 3 HOH A 43 343 78 HOH HOH . E 3 HOH A 44 344 50 HOH HOH . E 3 HOH A 45 345 25 HOH HOH . E 3 HOH A 46 346 47 HOH HOH . E 3 HOH A 47 347 65 HOH HOH . E 3 HOH A 48 348 52 HOH HOH . E 3 HOH A 49 349 48 HOH HOH . E 3 HOH A 50 350 83 HOH HOH . E 3 HOH A 51 351 71 HOH HOH . E 3 HOH A 52 352 7 HOH HOH . E 3 HOH A 53 353 6 HOH HOH . E 3 HOH A 54 354 3 HOH HOH . E 3 HOH A 55 355 54 HOH HOH . E 3 HOH A 56 356 87 HOH HOH . E 3 HOH A 57 357 89 HOH HOH . E 3 HOH A 58 358 109 HOH HOH . E 3 HOH A 59 359 21 HOH HOH . E 3 HOH A 60 360 38 HOH HOH . E 3 HOH A 61 361 40 HOH HOH . E 3 HOH A 62 362 51 HOH HOH . E 3 HOH A 63 363 97 HOH HOH . E 3 HOH A 64 364 85 HOH HOH . E 3 HOH A 65 365 94 HOH HOH . E 3 HOH A 66 366 91 HOH HOH . E 3 HOH A 67 367 108 HOH HOH . E 3 HOH A 68 368 99 HOH HOH . F 3 HOH B 1 301 84 HOH HOH . F 3 HOH B 2 302 49 HOH HOH . F 3 HOH B 3 303 101 HOH HOH . F 3 HOH B 4 304 75 HOH HOH . F 3 HOH B 5 305 105 HOH HOH . F 3 HOH B 6 306 81 HOH HOH . F 3 HOH B 7 307 102 HOH HOH . F 3 HOH B 8 308 36 HOH HOH . F 3 HOH B 9 309 86 HOH HOH . F 3 HOH B 10 310 8 HOH HOH . F 3 HOH B 11 311 19 HOH HOH . F 3 HOH B 12 312 66 HOH HOH . F 3 HOH B 13 313 61 HOH HOH . F 3 HOH B 14 314 9 HOH HOH . F 3 HOH B 15 315 43 HOH HOH . F 3 HOH B 16 316 37 HOH HOH . F 3 HOH B 17 317 103 HOH HOH . F 3 HOH B 18 318 41 HOH HOH . F 3 HOH B 19 319 46 HOH HOH . F 3 HOH B 20 320 95 HOH HOH . F 3 HOH B 21 321 74 HOH HOH . F 3 HOH B 22 322 11 HOH HOH . F 3 HOH B 23 323 68 HOH HOH . F 3 HOH B 24 324 110 HOH HOH . F 3 HOH B 25 325 14 HOH HOH . F 3 HOH B 26 326 79 HOH HOH . F 3 HOH B 27 327 27 HOH HOH . F 3 HOH B 28 328 29 HOH HOH . F 3 HOH B 29 329 23 HOH HOH . F 3 HOH B 30 330 58 HOH HOH . F 3 HOH B 31 331 1 HOH HOH . F 3 HOH B 32 332 76 HOH HOH . F 3 HOH B 33 333 57 HOH HOH . F 3 HOH B 34 334 90 HOH HOH . F 3 HOH B 35 335 60 HOH HOH . F 3 HOH B 36 336 2 HOH HOH . F 3 HOH B 37 337 106 HOH HOH . F 3 HOH B 38 338 55 HOH HOH . F 3 HOH B 39 339 88 HOH HOH . F 3 HOH B 40 340 98 HOH HOH . F 3 HOH B 41 341 73 HOH HOH . F 3 HOH B 42 342 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 TKS . . . C 2 -2.117 -5.048 -52.694 1 40.87 ? C10 TKS 201 A 1 HETATM 2 C C12 TKS . . . C 2 -3.964 -3.411 -53.473 1 33.65 ? C12 TKS 201 A 1 HETATM 3 C C13 TKS . . . C 2 -3.375 -2.334 -52.573 1 39.32 ? C13 TKS 201 A 1 HETATM 4 C C15 TKS . . . C 2 0.656 -4.175 -48.681 1 42.44 ? C15 TKS 201 A 1 HETATM 5 C C11 TKS . . . C 2 -3.102 -4.631 -53.773 1 39.49 ? C11 TKS 201 A 1 HETATM 6 C C14 TKS . . . C 2 -2.494 -2.876 -51.454 1 33 ? C14 TKS 201 A 1 HETATM 7 C C17 TKS . . . C 2 0.415 -4.518 -46.17 1 35.77 ? C17 TKS 201 A 1 HETATM 8 C C18 TKS . . . C 2 0.997 -3.45 -45.266 1 33.34 ? C18 TKS 201 A 1 HETATM 9 C C20 TKS . . . C 2 2.939 -1.946 -44.913 1 34.31 ? C20 TKS 201 A 1 HETATM 10 C C22 TKS . . . C 2 4.647 -3.168 -46.051 1 43.46 ? C22 TKS 201 A 1 HETATM 11 C C23 TKS . . . C 2 3.28 -3.864 -46.24 1 37.33 ? C23 TKS 201 A 1 HETATM 12 C C25 TKS . . . C 2 -0.835 -5.136 -45.52 1 33.7 ? C25 TKS 201 A 1 HETATM 13 C C29 TKS . . . C 2 6.594 -0.362 -51.438 1 51.46 ? C29 TKS 201 A 1 HETATM 14 C C01 TKS . . . C 2 5.419 -1.821 -53.076 1 53.48 ? C01 TKS 201 A 1 HETATM 15 C C02 TKS . . . C 2 5.232 -0.823 -51.932 1 44.69 ? C02 TKS 201 A 1 HETATM 16 C C03 TKS . . . C 2 4.459 -1.516 -50.807 1 44.38 ? C03 TKS 201 A 1 HETATM 17 C C05 TKS . . . C 2 2.202 -2.147 -50.406 1 41.54 ? C05 TKS 201 A 1 HETATM 18 C C07 TKS . . . C 2 0.135 -3.529 -49.973 1 36.03 ? C07 TKS 201 A 1 HETATM 19 C C08 TKS . . . C 2 -0.759 -4.515 -50.695 1 36.31 ? C08 TKS 201 A 1 HETATM 20 C C09 TKS . . . C 2 -1.468 -3.907 -51.914 1 34.63 ? C09 TKS 201 A 1 HETATM 21 C C19 TKS . . . C 2 2.247 -2.813 -45.864 1 33.11 ? C19 TKS 201 A 1 HETATM 22 C C30 TKS . . . C 2 4.406 0.385 -52.376 1 54.1 ? C30 TKS 201 A 1 HETATM 23 C C31 TKS . . . C 2 3.831 1.197 -51.405 1 53.11 ? C31 TKS 201 A 1 HETATM 24 C C32 TKS . . . C 2 3.075 2.297 -51.757 1 52.11 ? C32 TKS 201 A 1 HETATM 25 C C34 TKS . . . C 2 2.891 2.6 -53.1 1 51.65 ? C34 TKS 201 A 1 HETATM 26 C C35 TKS . . . C 2 3.466 1.795 -54.079 1 50.32 ? C35 TKS 201 A 1 HETATM 27 C C36 TKS . . . C 2 4.224 0.687 -53.719 1 54.19 ? C36 TKS 201 A 1 HETATM 28 N N06 TKS . . . C 2 1.304 -3.213 -50.774 1 38.21 ? N06 TKS 201 A 1 HETATM 29 N N16 TKS . . . C 2 -0.042 -3.926 -47.432 1 36.72 ? N16 TKS 201 A 1 HETATM 30 N N21 TKS . . . C 2 4.427 -2.162 -45.053 1 35.49 ? N21 TKS 201 A 1 HETATM 31 O O04 TKS . . . C 2 3.202 -1.814 -51.334 1 43.73 ? O04 TKS 201 A 1 HETATM 32 O O24 TKS . . . C 2 2.423 -1.172 -44.176 1 31.57 ? O24 TKS 201 A 1 HETATM 33 O O26 TKS . . . C 2 -1.261 -6.228 -46.305 1 33.27 ? O26 TKS 201 A 1 HETATM 34 O O27 TKS . . . C 2 1.625 -4.877 -48.717 1 32.32 ? O27 TKS 201 A 1 HETATM 35 O O28 TKS . . . C 2 2.109 -1.578 -49.364 1 37.32 ? O28 TKS 201 A 1 HETATM 36 CL CL3 TKS . . . C 2 2.339 3.311 -50.48 1 62.27 ? CL3 TKS 201 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 393 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 36 #