data_6W5K
#
_model_server_result.job_id            NJWWpblgU4LhYpbkNiHbBg 
_model_server_result.datetime_utc      '2025-02-05 10:51:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6w5k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    6W5K 
#
_exptl.entry_id    6W5K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              514.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N~2~-{[2-(3-chlorophenyl)-2-methylpropoxy]carbonyl}-N-{(1R,2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]-1-sulfanylpropan-2-yl}-L-leucinamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.09 
_cell.angle_gamma         90 
_cell.entry_id            6W5K 
_cell.length_a            37.697 
_cell.length_b            124.899 
_cell.length_c            64.137 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6W5K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I 1 1 
B,F,J 2 1 
C,G,K 3 1 
D,H,L 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 145 A CYS 139 1_555 E C22 TKV . A TKV 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? 
covale ? covale2 B SG CYS 145 B CYS 139 1_555 F C22 TKV . B TKV 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.797 ? 
covale ? covale3 C SG CYS 145 C CYS 139 1_555 G C22 TKV . C TKV 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.784 ? 
covale ? covale4 D SG CYS 145 D CYS 139 1_555 H C22 TKV . D TKV 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.797 ? 
#
_chem_comp.formula           'C24 H36 Cl N3 O5 S' 
_chem_comp.formula_weight    514.078 
_chem_comp.id                TKV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N~2~-{[2-(3-chlorophenyl)-2-methylpropoxy]carbonyl}-N-{(1R,2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]-1-sulfanylpropan-2-yl}-L-leucinamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C10 C09 TKV sing 306 n n 
C09 C08 TKV sing 307 n n 
C09 C11 TKV sing 308 n n 
C08 C07 TKV sing 309 n n 
O24 C12 TKV doub 310 n n 
C26 C02 TKV sing 311 n n 
N06 C07 TKV sing 312 n n 
N06 C05 TKV sing 313 n n 
O23 C22 TKV sing 314 n n 
C07 C12 TKV sing 315 n n 
O04 C05 TKV sing 316 n n 
O04 C03 TKV sing 317 n n 
C12 N13 TKV sing 318 n n 
C05 O25 TKV doub 319 n n 
C02 C03 TKV sing 320 n n 
C02 C01 TKV sing 321 n n 
C02 C27 TKV sing 322 n n 
C33 C27 TKV doub 323 n y 
C33 C32 TKV sing 324 n y 
N13 C14 TKV sing 325 n n 
C14 C22 TKV sing 326 n n 
C14 C15 TKV sing 327 n n 
C20 C19 TKV sing 328 n n 
C20 C16 TKV sing 329 n n 
C27 C28 TKV sing 330 n y 
C19 N18 TKV sing 331 n n 
C32 C31 TKV doub 332 n y 
C15 C16 TKV sing 333 n n 
C16 C17 TKV sing 334 n n 
C28 C29 TKV doub 335 n y 
N18 C17 TKV sing 336 n n 
C31 C29 TKV sing 337 n y 
C17 O21 TKV doub 338 n n 
C29 CL3 TKV sing 339 n n 
C22 S1 TKV sing 340 n n 
C01 H1 TKV sing 341 n n 
C01 H2 TKV sing 342 n n 
C01 H3 TKV sing 343 n n 
C03 H4 TKV sing 344 n n 
C03 H5 TKV sing 345 n n 
C07 H6 TKV sing 346 n n 
C08 H7 TKV sing 347 n n 
C08 H8 TKV sing 348 n n 
C09 H9 TKV sing 349 n n 
C10 H10 TKV sing 350 n n 
C10 H11 TKV sing 351 n n 
C10 H12 TKV sing 352 n n 
C11 H13 TKV sing 353 n n 
C11 H14 TKV sing 354 n n 
C11 H15 TKV sing 355 n n 
C14 H16 TKV sing 356 n n 
C15 H17 TKV sing 357 n n 
C15 H18 TKV sing 358 n n 
C16 H19 TKV sing 359 n n 
C19 H20 TKV sing 360 n n 
C19 H21 TKV sing 361 n n 
C20 H22 TKV sing 362 n n 
C20 H23 TKV sing 363 n n 
C22 H24 TKV sing 364 n n 
C26 H25 TKV sing 365 n n 
C26 H26 TKV sing 366 n n 
C26 H27 TKV sing 367 n n 
C28 H28 TKV sing 368 n n 
C31 H29 TKV sing 369 n n 
C32 H30 TKV sing 370 n n 
C33 H31 TKV sing 371 n n 
N06 H32 TKV sing 372 n n 
N13 H33 TKV sing 373 n n 
N18 H34 TKV sing 374 n n 
O23 H35 TKV sing 375 n n 
S1 H36 TKV sing 376 n n 
#
_atom_sites.entry_id                     6W5K 
_atom_sites.fract_transf_matrix[1][1]    0.026527 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001431 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008006 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015614 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 TKV A 1 201 1 TKV A71 . 
F 2 TKV B 1 201 2 TKV A71 . 
G 2 TKV C 1 201 3 TKV A71 . 
H 2 TKV D 1 201 4 TKV A71 . 
I 3 HOH A 1 301 58 HOH HOH . 
I 3 HOH A 2 302 38 HOH HOH . 
I 3 HOH A 3 303 113 HOH HOH . 
I 3 HOH A 4 304 24 HOH HOH . 
I 3 HOH A 5 305 84 HOH HOH . 
I 3 HOH A 6 306 14 HOH HOH . 
I 3 HOH A 7 307 7 HOH HOH . 
I 3 HOH A 8 308 72 HOH HOH . 
I 3 HOH A 9 309 81 HOH HOH . 
I 3 HOH A 10 310 50 HOH HOH . 
I 3 HOH A 11 311 43 HOH HOH . 
I 3 HOH A 12 312 40 HOH HOH . 
I 3 HOH A 13 313 105 HOH HOH . 
I 3 HOH A 14 314 52 HOH HOH . 
I 3 HOH A 15 315 83 HOH HOH . 
I 3 HOH A 16 316 60 HOH HOH . 
I 3 HOH A 17 317 89 HOH HOH . 
I 3 HOH A 18 318 17 HOH HOH . 
I 3 HOH A 19 319 28 HOH HOH . 
I 3 HOH A 20 320 87 HOH HOH . 
I 3 HOH A 21 321 1 HOH HOH . 
I 3 HOH A 22 322 95 HOH HOH . 
I 3 HOH A 23 323 107 HOH HOH . 
J 3 HOH B 1 301 108 HOH HOH . 
J 3 HOH B 2 302 77 HOH HOH . 
J 3 HOH B 3 303 75 HOH HOH . 
J 3 HOH B 4 304 97 HOH HOH . 
J 3 HOH B 5 305 32 HOH HOH . 
J 3 HOH B 6 306 73 HOH HOH . 
J 3 HOH B 7 307 48 HOH HOH . 
J 3 HOH B 8 308 70 HOH HOH . 
J 3 HOH B 9 309 23 HOH HOH . 
J 3 HOH B 10 310 41 HOH HOH . 
J 3 HOH B 11 311 10 HOH HOH . 
J 3 HOH B 12 312 46 HOH HOH . 
J 3 HOH B 13 313 3 HOH HOH . 
J 3 HOH B 14 314 11 HOH HOH . 
J 3 HOH B 15 315 80 HOH HOH . 
J 3 HOH B 16 316 4 HOH HOH . 
J 3 HOH B 17 317 96 HOH HOH . 
J 3 HOH B 18 318 62 HOH HOH . 
J 3 HOH B 19 319 19 HOH HOH . 
J 3 HOH B 20 320 16 HOH HOH . 
J 3 HOH B 21 321 57 HOH HOH . 
J 3 HOH B 22 322 42 HOH HOH . 
J 3 HOH B 23 323 63 HOH HOH . 
J 3 HOH B 24 324 27 HOH HOH . 
J 3 HOH B 25 325 90 HOH HOH . 
J 3 HOH B 26 326 26 HOH HOH . 
J 3 HOH B 27 327 33 HOH HOH . 
J 3 HOH B 28 328 69 HOH HOH . 
J 3 HOH B 29 329 2 HOH HOH . 
J 3 HOH B 30 330 55 HOH HOH . 
J 3 HOH B 31 331 68 HOH HOH . 
J 3 HOH B 32 332 64 HOH HOH . 
J 3 HOH B 33 333 45 HOH HOH . 
J 3 HOH B 34 334 82 HOH HOH . 
K 3 HOH C 1 301 115 HOH HOH . 
K 3 HOH C 2 302 51 HOH HOH . 
K 3 HOH C 3 303 79 HOH HOH . 
K 3 HOH C 4 304 37 HOH HOH . 
K 3 HOH C 5 305 101 HOH HOH . 
K 3 HOH C 6 306 102 HOH HOH . 
K 3 HOH C 7 307 110 HOH HOH . 
K 3 HOH C 8 308 76 HOH HOH . 
K 3 HOH C 9 309 93 HOH HOH . 
K 3 HOH C 10 310 114 HOH HOH . 
K 3 HOH C 11 311 109 HOH HOH . 
K 3 HOH C 12 312 39 HOH HOH . 
K 3 HOH C 13 313 34 HOH HOH . 
K 3 HOH C 14 314 31 HOH HOH . 
K 3 HOH C 15 315 44 HOH HOH . 
K 3 HOH C 16 316 78 HOH HOH . 
K 3 HOH C 17 317 92 HOH HOH . 
K 3 HOH C 18 318 71 HOH HOH . 
K 3 HOH C 19 319 86 HOH HOH . 
K 3 HOH C 20 320 61 HOH HOH . 
K 3 HOH C 21 321 54 HOH HOH . 
K 3 HOH C 22 322 59 HOH HOH . 
K 3 HOH C 23 323 49 HOH HOH . 
K 3 HOH C 24 324 20 HOH HOH . 
K 3 HOH C 25 325 5 HOH HOH . 
K 3 HOH C 26 326 91 HOH HOH . 
K 3 HOH C 27 327 13 HOH HOH . 
K 3 HOH C 28 328 94 HOH HOH . 
L 3 HOH D 1 301 98 HOH HOH . 
L 3 HOH D 2 302 6 HOH HOH . 
L 3 HOH D 3 303 74 HOH HOH . 
L 3 HOH D 4 304 112 HOH HOH . 
L 3 HOH D 5 305 106 HOH HOH . 
L 3 HOH D 6 306 29 HOH HOH . 
L 3 HOH D 7 307 25 HOH HOH . 
L 3 HOH D 8 308 36 HOH HOH . 
L 3 HOH D 9 309 66 HOH HOH . 
L 3 HOH D 10 310 8 HOH HOH . 
L 3 HOH D 11 311 35 HOH HOH . 
L 3 HOH D 12 312 65 HOH HOH . 
L 3 HOH D 13 313 9 HOH HOH . 
L 3 HOH D 14 314 18 HOH HOH . 
L 3 HOH D 15 315 22 HOH HOH . 
L 3 HOH D 16 316 88 HOH HOH . 
L 3 HOH D 17 317 56 HOH HOH . 
L 3 HOH D 18 318 53 HOH HOH . 
L 3 HOH D 19 319 47 HOH HOH . 
L 3 HOH D 20 320 85 HOH HOH . 
L 3 HOH D 21 321 30 HOH HOH . 
L 3 HOH D 22 322 67 HOH HOH . 
L 3 HOH D 23 323 15 HOH HOH . 
L 3 HOH D 24 324 21 HOH HOH . 
L 3 HOH D 25 325 104 HOH HOH . 
L 3 HOH D 26 326 12 HOH HOH . 
L 3 HOH D 27 327 100 HOH HOH . 
L 3 HOH D 28 328 99 HOH HOH . 
L 3 HOH D 29 329 103 HOH HOH . 
L 3 HOH D 30 330 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 TKV . . . E 2 -25.466 20.554 22.659 1 34.64 ? C01 TKV 201 A 1 
HETATM 2 C C02 TKV . . . E 2 -23.936 20.687 22.487 1 41.37 ? C02 TKV 201 A 1 
HETATM 3 C C03 TKV . . . E 2 -23.439 22.066 23.107 1 33.6 ? C03 TKV 201 A 1 
HETATM 4 C C05 TKV . . . E 2 -21.682 23.638 22.42 1 38.88 ? C05 TKV 201 A 1 
HETATM 5 C C07 TKV . . . E 2 -19.417 24.785 21.909 1 35.63 ? C07 TKV 201 A 1 
HETATM 6 C C08 TKV . . . E 2 -18.213 24.808 20.856 1 37.02 ? C08 TKV 201 A 1 
HETATM 7 C C09 TKV . . . E 2 -17.343 23.462 20.847 1 40.31 ? C09 TKV 201 A 1 
HETATM 8 C C10 TKV . . . E 2 -15.998 23.695 20.1 1 40.56 ? C10 TKV 201 A 1 
HETATM 9 C C11 TKV . . . E 2 -17.029 22.918 22.264 1 34.82 ? C11 TKV 201 A 1 
HETATM 10 C C12 TKV . . . E 2 -19.819 26.27 22.187 1 34.82 ? C12 TKV 201 A 1 
HETATM 11 C C14 TKV . . . E 2 -19.635 28.492 23.431 1 33.16 ? C14 TKV 201 A 1 
HETATM 12 C C15 TKV . . . E 2 -20.605 28.542 24.681 1 38.31 ? C15 TKV 201 A 1 
HETATM 13 C C16 TKV . . . E 2 -21.829 27.578 24.545 1 37.19 ? C16 TKV 201 A 1 
HETATM 14 C C17 TKV . . . E 2 -22.641 27.582 25.811 1 39.34 ? C17 TKV 201 A 1 
HETATM 15 C C19 TKV . . . E 2 -24.236 27.847 24.082 1 31.22 ? C19 TKV 201 A 1 
HETATM 16 C C20 TKV . . . E 2 -22.819 28.037 23.469 1 35.2 ? C20 TKV 201 A 1 
HETATM 17 C C22 TKV . . . E 2 -18.366 29.348 23.795 1 33.88 ? C22 TKV 201 A 1 
HETATM 18 C C26 TKV . . . E 2 -23.623 20.743 20.968 1 40.69 ? C26 TKV 201 A 1 
HETATM 19 C C27 TKV . . . E 2 -23.159 19.462 23.179 1 42.22 ? C27 TKV 201 A 1 
HETATM 20 N N06 TKV . . . E 2 -20.646 23.984 21.465 1 35.32 ? N06 TKV 201 A 1 
HETATM 21 N N13 TKV . . . E 2 -19.227 27.076 23.183 1 41.08 ? N13 TKV 201 A 1 
HETATM 22 N N18 TKV . . . E 2 -24.041 27.742 25.568 1 39.18 ? N18 TKV 201 A 1 
HETATM 23 O O04 TKV . . . E 2 -22.855 22.913 22.062 1 44.63 ? O04 TKV 201 A 1 
HETATM 24 O O21 TKV . . . E 2 -22.165 27.473 26.946 1 40.31 ? O21 TKV 201 A 1 
HETATM 25 O O23 TKV . . . E 2 -17.63 29.428 22.541 1 35.42 ? O23 TKV 201 A 1 
HETATM 26 O O24 TKV . . . E 2 -20.721 26.786 21.473 1 30.02 ? O24 TKV 201 A 1 
HETATM 27 O O25 TKV . . . E 2 -21.588 23.969 23.613 1 35.54 ? O25 TKV 201 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#