data_6W5L
#
_model_server_result.job_id            tkx_JYc3STy1wHOtQ21YPg 
_model_server_result.datetime_utc      '2024-12-26 14:59:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6w5l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    6W5L 
#
_exptl.entry_id    6W5L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              604.113 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2~{S})-~{N}-[(1~{R})-1-[bis($l^{1}-oxidanyl)-methoxy-$l^{5}-sulfanyl]-1-oxidanyl-3-[(3~{R})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-2-[[[2-(3-chlorophenyl)-2-methyl-propoxy]-oxidanylidene-methyl]amino]-4-methyl-pentanamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         91.65 
_cell.angle_beta          96.44 
_cell.angle_gamma         95.44 
_cell.entry_id            6W5L 
_cell.length_a            37.435 
_cell.length_b            37.859 
_cell.length_c            115.535 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6W5L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I 1 1 
B,F,J 2 1 
C,G,K 3 1 
D,H,L 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 146 A CYS 139 1_555 E C22 T0D . A T0D 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? 
covale ? covale2 B SG CYS 146 B CYS 139 1_555 F C22 T0D . B T0D 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? 
covale ? covale3 C SG CYS 146 C CYS 139 1_555 G C22 T0D . C T0D 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? 
covale ? covale4 D SG CYS 146 D CYS 139 1_555 H C22 T0D . D T0D 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? 
#
_chem_comp.formula           'C26 H38 Cl N3 O9 S' 
_chem_comp.formula_weight    604.113 
_chem_comp.id                T0D 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2~{S})-~{N}-[(1~{R})-1-[bis($l^{1}-oxidanyl)-methoxy-$l^{5}-sulfanyl]-1-oxidanyl-3-[(3~{R})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-2-[[[2-(3-chlorophenyl)-2-methyl-propoxy]-oxidanylidene-methyl]amino]-4-methyl-pentanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C31 C32 T0D doub 290 n y 
C31 C29 T0D sing 291 n y 
C32 C33 T0D sing 292 n y 
CL30 C29 T0D sing 293 n n 
C29 C28 T0D doub 294 n y 
C33 C27 T0D doub 295 n y 
C28 C27 T0D sing 296 n y 
C27 C02 T0D sing 297 n n 
C01 C02 T0D sing 298 n n 
C26 C02 T0D sing 299 n n 
C02 C03 T0D sing 300 n n 
C03 O04 T0D sing 301 n n 
O04 C05 T0D sing 302 n n 
C05 O25 T0D doub 303 n n 
C05 N06 T0D sing 304 n n 
C11 C09 T0D sing 305 n n 
C09 C10 T0D sing 306 n n 
C09 C08 T0D sing 307 n n 
N06 C07 T0D sing 308 n n 
C07 C08 T0D sing 309 n n 
C07 C12 T0D sing 310 n n 
C12 N13 T0D sing 311 n n 
C12 O24 T0D doub 312 n n 
O21 C17 T0D doub 313 n n 
C17 C16 T0D sing 314 n n 
C17 N18 T0D sing 315 n n 
N13 C14 T0D sing 316 n n 
C16 C15 T0D sing 317 n n 
C16 C20 T0D sing 318 n n 
N18 C19 T0D sing 319 n n 
C19 C20 T0D sing 320 n n 
C15 C14 T0D sing 321 n n 
C14 C22 T0D sing 322 n n 
C22 O23 T0D sing 323 n n 
C22 S1 T0D sing 324 n n 
C01 H1 T0D sing 325 n n 
C03 H4 T0D sing 326 n n 
C07 H6 T0D sing 327 n n 
C08 H7 T0D sing 328 n n 
C16 H19 T0D sing 329 n n 
C19 H20 T0D sing 330 n n 
C19 H21 T0D sing 331 n n 
C20 H22 T0D sing 332 n n 
C20 H23 T0D sing 333 n n 
C22 H24 T0D sing 334 n n 
C26 H25 T0D sing 335 n n 
C26 H26 T0D sing 336 n n 
C26 H27 T0D sing 337 n n 
C28 H28 T0D sing 338 n n 
C31 H29 T0D sing 339 n n 
C32 H30 T0D sing 340 n n 
C33 H31 T0D sing 341 n n 
N06 H32 T0D sing 342 n n 
N13 H33 T0D sing 343 n n 
N18 H34 T0D sing 344 n n 
S1 O1 T0D doub 345 n n 
S1 O2 T0D doub 346 n n 
S1 O3 T0D sing 347 n n 
O3 H38 T0D sing 348 n n 
O23 C24 T0D sing 349 n n 
C24 C25 T0D sing 350 n n 
C24 O26 T0D doub 351 n n 
C01 H3 T0D sing 352 n n 
C01 H8 T0D sing 353 n n 
C03 H5 T0D sing 354 n n 
C08 H2 T0D sing 355 n n 
C09 H9 T0D sing 356 n n 
C10 H10 T0D sing 357 n n 
C10 H11 T0D sing 358 n n 
C10 H12 T0D sing 359 n n 
C11 H13 T0D sing 360 n n 
C11 H14 T0D sing 361 n n 
C11 H15 T0D sing 362 n n 
C14 H16 T0D sing 363 n n 
C15 H17 T0D sing 364 n n 
C15 H18 T0D sing 365 n n 
C25 H35 T0D sing 366 n n 
C25 H36 T0D sing 367 n n 
C25 H37 T0D sing 368 n n 
#
_atom_sites.entry_id                     6W5L 
_atom_sites.fract_transf_matrix[1][1]    0.026713 
_atom_sites.fract_transf_matrix[1][2]    0.002543 
_atom_sites.fract_transf_matrix[1][3]    0.003118 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.026533 
_atom_sites.fract_transf_matrix[2][3]    0.001058 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008717 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 T0D A 1 201 1 T0D A71 . 
F 2 T0D B 1 201 2 T0D A71 . 
G 2 T0D C 1 201 4 T0D A71 . 
H 2 T0D D 1 201 3 T0D A71 . 
I 3 HOH A 1 301 2 HOH HOH . 
I 3 HOH A 2 302 57 HOH HOH . 
I 3 HOH A 3 303 80 HOH HOH . 
I 3 HOH A 4 304 55 HOH HOH . 
I 3 HOH A 5 305 3 HOH HOH . 
I 3 HOH A 6 306 24 HOH HOH . 
I 3 HOH A 7 307 15 HOH HOH . 
I 3 HOH A 8 308 29 HOH HOH . 
I 3 HOH A 9 309 48 HOH HOH . 
I 3 HOH A 10 310 47 HOH HOH . 
I 3 HOH A 11 311 28 HOH HOH . 
I 3 HOH A 12 312 41 HOH HOH . 
I 3 HOH A 13 313 45 HOH HOH . 
I 3 HOH A 14 314 66 HOH HOH . 
I 3 HOH A 15 315 75 HOH HOH . 
I 3 HOH A 16 316 1 HOH HOH . 
I 3 HOH A 17 317 27 HOH HOH . 
I 3 HOH A 18 318 60 HOH HOH . 
J 3 HOH B 1 301 9 HOH HOH . 
J 3 HOH B 2 302 78 HOH HOH . 
J 3 HOH B 3 303 52 HOH HOH . 
J 3 HOH B 4 304 61 HOH HOH . 
J 3 HOH B 5 305 14 HOH HOH . 
J 3 HOH B 6 306 39 HOH HOH . 
J 3 HOH B 7 307 54 HOH HOH . 
J 3 HOH B 8 308 18 HOH HOH . 
J 3 HOH B 9 309 50 HOH HOH . 
J 3 HOH B 10 310 16 HOH HOH . 
J 3 HOH B 11 311 13 HOH HOH . 
J 3 HOH B 12 312 31 HOH HOH . 
J 3 HOH B 13 313 56 HOH HOH . 
J 3 HOH B 14 314 38 HOH HOH . 
J 3 HOH B 15 315 33 HOH HOH . 
K 3 HOH C 1 301 17 HOH HOH . 
K 3 HOH C 2 302 6 HOH HOH . 
K 3 HOH C 3 303 63 HOH HOH . 
K 3 HOH C 4 304 44 HOH HOH . 
K 3 HOH C 5 305 22 HOH HOH . 
K 3 HOH C 6 306 10 HOH HOH . 
K 3 HOH C 7 307 73 HOH HOH . 
K 3 HOH C 8 308 25 HOH HOH . 
K 3 HOH C 9 309 77 HOH HOH . 
K 3 HOH C 10 310 67 HOH HOH . 
K 3 HOH C 11 311 76 HOH HOH . 
K 3 HOH C 12 312 42 HOH HOH . 
K 3 HOH C 13 313 72 HOH HOH . 
K 3 HOH C 14 314 62 HOH HOH . 
K 3 HOH C 15 315 46 HOH HOH . 
K 3 HOH C 16 316 64 HOH HOH . 
K 3 HOH C 17 317 34 HOH HOH . 
L 3 HOH D 1 301 37 HOH HOH . 
L 3 HOH D 2 302 69 HOH HOH . 
L 3 HOH D 3 303 21 HOH HOH . 
L 3 HOH D 4 304 5 HOH HOH . 
L 3 HOH D 5 305 7 HOH HOH . 
L 3 HOH D 6 306 43 HOH HOH . 
L 3 HOH D 7 307 79 HOH HOH . 
L 3 HOH D 8 308 68 HOH HOH . 
L 3 HOH D 9 309 65 HOH HOH . 
L 3 HOH D 10 310 30 HOH HOH . 
L 3 HOH D 11 311 59 HOH HOH . 
L 3 HOH D 12 312 20 HOH HOH . 
L 3 HOH D 13 313 53 HOH HOH . 
L 3 HOH D 14 314 11 HOH HOH . 
L 3 HOH D 15 315 19 HOH HOH . 
L 3 HOH D 16 316 81 HOH HOH . 
L 3 HOH D 17 317 71 HOH HOH . 
L 3 HOH D 18 318 49 HOH HOH . 
L 3 HOH D 19 319 8 HOH HOH . 
L 3 HOH D 20 320 35 HOH HOH . 
L 3 HOH D 21 321 40 HOH HOH . 
L 3 HOH D 22 322 36 HOH HOH . 
L 3 HOH D 23 323 23 HOH HOH . 
L 3 HOH D 24 324 32 HOH HOH . 
L 3 HOH D 25 325 58 HOH HOH . 
L 3 HOH D 26 326 74 HOH HOH . 
L 3 HOH D 27 327 12 HOH HOH . 
L 3 HOH D 28 328 4 HOH HOH . 
L 3 HOH D 29 329 51 HOH HOH . 
L 3 HOH D 30 330 82 HOH HOH . 
L 3 HOH D 31 331 26 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 T0D . . . E 2 7.728 0.186 -5.085 1 48.89 ? C01 T0D 201 A 1 
HETATM 2 C C02 T0D . . . E 2 8.684 -1.012 -4.843 1 54.9 ? C02 T0D 201 A 1 
HETATM 3 C C03 T0D . . . E 2 8.41 -1.642 -3.371 1 53.72 ? C03 T0D 201 A 1 
HETATM 4 C C05 T0D . . . E 2 8.577 -3.874 -2.409 1 50.42 ? C05 T0D 201 A 1 
HETATM 5 C C07 T0D . . . E 2 8.947 -5.95 -1.034 1 48.31 ? C07 T0D 201 A 1 
HETATM 6 C C08 T0D . . . E 2 10.117 -6.996 -0.688 1 44.91 ? C08 T0D 201 A 1 
HETATM 7 C C09 T0D . . . E 2 10.582 -7.739 -1.957 1 51.28 ? C09 T0D 201 A 1 
HETATM 8 C C10 T0D . . . E 2 12.039 -8.194 -1.8 1 58.72 ? C10 T0D 201 A 1 
HETATM 9 C C11 T0D . . . E 2 9.665 -8.944 -2.197 1 44.89 ? C11 T0D 201 A 1 
HETATM 10 C C12 T0D . . . E 2 8.148 -5.568 0.288 1 42.17 ? C12 T0D 201 A 1 
HETATM 11 C C14 T0D . . . E 2 6.214 -5.9 1.966 1 38.8 ? C14 T0D 201 A 1 
HETATM 12 C C15 T0D . . . E 2 4.92 -5.091 1.715 1 40.47 ? C15 T0D 201 A 1 
HETATM 13 C C16 T0D . . . E 2 5.187 -3.739 0.965 1 40.27 ? C16 T0D 201 A 1 
HETATM 14 C C17 T0D . . . E 2 3.882 -2.974 0.722 1 45.94 ? C17 T0D 201 A 1 
HETATM 15 C C19 T0D . . . E 2 5.415 -1.306 1.422 1 46.83 ? C19 T0D 201 A 1 
HETATM 16 C C20 T0D . . . E 2 6.01 -2.733 1.777 1 39.73 ? C20 T0D 201 A 1 
HETATM 17 C C22 T0D . . . E 2 5.791 -7.167 2.734 1 40.14 ? C22 T0D 201 A 1 
HETATM 18 C C26 T0D . . . E 2 10.143 -0.496 -4.879 1 58.16 ? C26 T0D 201 A 1 
HETATM 19 C C27 T0D . . . E 2 8.502 -2.121 -5.959 1 49.06 ? C27 T0D 201 A 1 
HETATM 20 C C28 T0D . . . E 2 7.221 -2.611 -6.244 1 50.19 ? C28 T0D 201 A 1 
HETATM 21 C C29 T0D . . . E 2 7.029 -3.58 -7.238 1 46.09 ? C29 T0D 201 A 1 
HETATM 22 C C31 T0D . . . E 2 8.085 -4.108 -7.987 1 45.57 ? C31 T0D 201 A 1 
HETATM 23 C C32 T0D . . . E 2 9.385 -3.627 -7.711 1 49.47 ? C32 T0D 201 A 1 
HETATM 24 C C33 T0D . . . E 2 9.593 -2.639 -6.707 1 51.81 ? C33 T0D 201 A 1 
HETATM 25 N N06 T0D . . . E 2 9.461 -4.727 -1.693 1 45.98 ? N06 T0D 201 A 1 
HETATM 26 N N13 T0D . . . E 2 6.955 -6.227 0.728 1 44.56 ? N13 T0D 201 A 1 
HETATM 27 N N18 T0D . . . E 2 4.008 -1.557 0.968 1 48.67 ? N18 T0D 201 A 1 
HETATM 28 O O04 T0D . . . E 2 9.059 -2.929 -3.314 1 53.28 ? O04 T0D 201 A 1 
HETATM 29 O O21 T0D . . . E 2 2.82 -3.496 0.334 1 40.76 ? O21 T0D 201 A 1 
HETATM 30 O O23 T0D . . . E 2 6.923 -7.953 3.032 1 49.03 ? O23 T0D 201 A 1 
HETATM 31 O O24 T0D . . . E 2 8.62 -4.628 0.986 1 46.35 ? O24 T0D 201 A 1 
HETATM 32 O O25 T0D . . . E 2 7.354 -3.984 -2.274 1 47.85 ? O25 T0D 201 A 1 
HETATM 33 CL CL30 T0D . . . E 2 5.347 -4.16 -7.54 1 67.89 ? CL30 T0D 201 A 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           35 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           33 
#