data_6W5L # _model_server_result.job_id 4ophxOMcSYX4gKV-tvjJJg _model_server_result.datetime_utc '2024-12-08 16:30:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w5l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 6W5L # _exptl.entry_id 6W5L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 604.113 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{S})-~{N}-[(1~{R})-1-[bis($l^{1}-oxidanyl)-methoxy-$l^{5}-sulfanyl]-1-oxidanyl-3-[(3~{R})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-2-[[[2-(3-chlorophenyl)-2-methyl-propoxy]-oxidanylidene-methyl]amino]-4-methyl-pentanamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 91.65 _cell.angle_beta 96.44 _cell.angle_gamma 95.44 _cell.entry_id 6W5L _cell.length_a 37.435 _cell.length_b 37.859 _cell.length_c 115.535 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W5L _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 146 A CYS 139 1_555 E C22 T0D . A T0D 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? covale ? covale2 B SG CYS 146 B CYS 139 1_555 F C22 T0D . B T0D 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? covale ? covale3 C SG CYS 146 C CYS 139 1_555 G C22 T0D . C T0D 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? covale ? covale4 D SG CYS 146 D CYS 139 1_555 H C22 T0D . D T0D 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? # _chem_comp.formula 'C26 H38 Cl N3 O9 S' _chem_comp.formula_weight 604.113 _chem_comp.id T0D _chem_comp.mon_nstd_flag . _chem_comp.name (2~{S})-~{N}-[(1~{R})-1-[bis($l^{1}-oxidanyl)-methoxy-$l^{5}-sulfanyl]-1-oxidanyl-3-[(3~{R})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-2-[[[2-(3-chlorophenyl)-2-methyl-propoxy]-oxidanylidene-methyl]amino]-4-methyl-pentanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C31 C32 T0D doub 290 n y C31 C29 T0D sing 291 n y C32 C33 T0D sing 292 n y CL30 C29 T0D sing 293 n n C29 C28 T0D doub 294 n y C33 C27 T0D doub 295 n y C28 C27 T0D sing 296 n y C27 C02 T0D sing 297 n n C01 C02 T0D sing 298 n n C26 C02 T0D sing 299 n n C02 C03 T0D sing 300 n n C03 O04 T0D sing 301 n n O04 C05 T0D sing 302 n n C05 O25 T0D doub 303 n n C05 N06 T0D sing 304 n n C11 C09 T0D sing 305 n n C09 C10 T0D sing 306 n n C09 C08 T0D sing 307 n n N06 C07 T0D sing 308 n n C07 C08 T0D sing 309 n n C07 C12 T0D sing 310 n n C12 N13 T0D sing 311 n n C12 O24 T0D doub 312 n n O21 C17 T0D doub 313 n n C17 C16 T0D sing 314 n n C17 N18 T0D sing 315 n n N13 C14 T0D sing 316 n n C16 C15 T0D sing 317 n n C16 C20 T0D sing 318 n n N18 C19 T0D sing 319 n n C19 C20 T0D sing 320 n n C15 C14 T0D sing 321 n n C14 C22 T0D sing 322 n n C22 O23 T0D sing 323 n n C22 S1 T0D sing 324 n n C01 H1 T0D sing 325 n n C03 H4 T0D sing 326 n n C07 H6 T0D sing 327 n n C08 H7 T0D sing 328 n n C16 H19 T0D sing 329 n n C19 H20 T0D sing 330 n n C19 H21 T0D sing 331 n n C20 H22 T0D sing 332 n n C20 H23 T0D sing 333 n n C22 H24 T0D sing 334 n n C26 H25 T0D sing 335 n n C26 H26 T0D sing 336 n n C26 H27 T0D sing 337 n n C28 H28 T0D sing 338 n n C31 H29 T0D sing 339 n n C32 H30 T0D sing 340 n n C33 H31 T0D sing 341 n n N06 H32 T0D sing 342 n n N13 H33 T0D sing 343 n n N18 H34 T0D sing 344 n n S1 O1 T0D doub 345 n n S1 O2 T0D doub 346 n n S1 O3 T0D sing 347 n n O3 H38 T0D sing 348 n n O23 C24 T0D sing 349 n n C24 C25 T0D sing 350 n n C24 O26 T0D doub 351 n n C01 H3 T0D sing 352 n n C01 H8 T0D sing 353 n n C03 H5 T0D sing 354 n n C08 H2 T0D sing 355 n n C09 H9 T0D sing 356 n n C10 H10 T0D sing 357 n n C10 H11 T0D sing 358 n n C10 H12 T0D sing 359 n n C11 H13 T0D sing 360 n n C11 H14 T0D sing 361 n n C11 H15 T0D sing 362 n n C14 H16 T0D sing 363 n n C15 H17 T0D sing 364 n n C15 H18 T0D sing 365 n n C25 H35 T0D sing 366 n n C25 H36 T0D sing 367 n n C25 H37 T0D sing 368 n n # _atom_sites.entry_id 6W5L _atom_sites.fract_transf_matrix[1][1] 0.026713 _atom_sites.fract_transf_matrix[1][2] 0.002543 _atom_sites.fract_transf_matrix[1][3] 0.003118 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026533 _atom_sites.fract_transf_matrix[2][3] 0.001058 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008717 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 T0D A 1 201 1 T0D A71 . F 2 T0D B 1 201 2 T0D A71 . G 2 T0D C 1 201 4 T0D A71 . H 2 T0D D 1 201 3 T0D A71 . I 3 HOH A 1 301 2 HOH HOH . I 3 HOH A 2 302 57 HOH HOH . I 3 HOH A 3 303 80 HOH HOH . I 3 HOH A 4 304 55 HOH HOH . I 3 HOH A 5 305 3 HOH HOH . I 3 HOH A 6 306 24 HOH HOH . I 3 HOH A 7 307 15 HOH HOH . I 3 HOH A 8 308 29 HOH HOH . I 3 HOH A 9 309 48 HOH HOH . I 3 HOH A 10 310 47 HOH HOH . I 3 HOH A 11 311 28 HOH HOH . I 3 HOH A 12 312 41 HOH HOH . I 3 HOH A 13 313 45 HOH HOH . I 3 HOH A 14 314 66 HOH HOH . I 3 HOH A 15 315 75 HOH HOH . I 3 HOH A 16 316 1 HOH HOH . I 3 HOH A 17 317 27 HOH HOH . I 3 HOH A 18 318 60 HOH HOH . J 3 HOH B 1 301 9 HOH HOH . J 3 HOH B 2 302 78 HOH HOH . J 3 HOH B 3 303 52 HOH HOH . J 3 HOH B 4 304 61 HOH HOH . J 3 HOH B 5 305 14 HOH HOH . J 3 HOH B 6 306 39 HOH HOH . J 3 HOH B 7 307 54 HOH HOH . J 3 HOH B 8 308 18 HOH HOH . J 3 HOH B 9 309 50 HOH HOH . J 3 HOH B 10 310 16 HOH HOH . J 3 HOH B 11 311 13 HOH HOH . J 3 HOH B 12 312 31 HOH HOH . J 3 HOH B 13 313 56 HOH HOH . J 3 HOH B 14 314 38 HOH HOH . J 3 HOH B 15 315 33 HOH HOH . K 3 HOH C 1 301 17 HOH HOH . K 3 HOH C 2 302 6 HOH HOH . K 3 HOH C 3 303 63 HOH HOH . K 3 HOH C 4 304 44 HOH HOH . K 3 HOH C 5 305 22 HOH HOH . K 3 HOH C 6 306 10 HOH HOH . K 3 HOH C 7 307 73 HOH HOH . K 3 HOH C 8 308 25 HOH HOH . K 3 HOH C 9 309 77 HOH HOH . K 3 HOH C 10 310 67 HOH HOH . K 3 HOH C 11 311 76 HOH HOH . K 3 HOH C 12 312 42 HOH HOH . K 3 HOH C 13 313 72 HOH HOH . K 3 HOH C 14 314 62 HOH HOH . K 3 HOH C 15 315 46 HOH HOH . K 3 HOH C 16 316 64 HOH HOH . K 3 HOH C 17 317 34 HOH HOH . L 3 HOH D 1 301 37 HOH HOH . L 3 HOH D 2 302 69 HOH HOH . L 3 HOH D 3 303 21 HOH HOH . L 3 HOH D 4 304 5 HOH HOH . L 3 HOH D 5 305 7 HOH HOH . L 3 HOH D 6 306 43 HOH HOH . L 3 HOH D 7 307 79 HOH HOH . L 3 HOH D 8 308 68 HOH HOH . L 3 HOH D 9 309 65 HOH HOH . L 3 HOH D 10 310 30 HOH HOH . L 3 HOH D 11 311 59 HOH HOH . L 3 HOH D 12 312 20 HOH HOH . L 3 HOH D 13 313 53 HOH HOH . L 3 HOH D 14 314 11 HOH HOH . L 3 HOH D 15 315 19 HOH HOH . L 3 HOH D 16 316 81 HOH HOH . L 3 HOH D 17 317 71 HOH HOH . L 3 HOH D 18 318 49 HOH HOH . L 3 HOH D 19 319 8 HOH HOH . L 3 HOH D 20 320 35 HOH HOH . L 3 HOH D 21 321 40 HOH HOH . L 3 HOH D 22 322 36 HOH HOH . L 3 HOH D 23 323 23 HOH HOH . L 3 HOH D 24 324 32 HOH HOH . L 3 HOH D 25 325 58 HOH HOH . L 3 HOH D 26 326 74 HOH HOH . L 3 HOH D 27 327 12 HOH HOH . L 3 HOH D 28 328 4 HOH HOH . L 3 HOH D 29 329 51 HOH HOH . L 3 HOH D 30 330 82 HOH HOH . L 3 HOH D 31 331 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 T0D . . . F 2 -12.764 -25.882 40.274 1 66.88 ? C01 T0D 201 B 1 HETATM 2 C C02 T0D . . . F 2 -12.321 -24.442 40.641 1 67.42 ? C02 T0D 201 B 1 HETATM 3 C C03 T0D . . . F 2 -11.703 -23.703 39.358 1 53.91 ? C03 T0D 201 B 1 HETATM 4 C C05 T0D . . . F 2 -11.12 -21.421 38.78 1 55.93 ? C05 T0D 201 B 1 HETATM 5 C C07 T0D . . . F 2 -9.907 -19.242 38.156 1 54.01 ? C07 T0D 201 B 1 HETATM 6 C C08 T0D . . . F 2 -8.894 -18.178 38.804 1 56.17 ? C08 T0D 201 B 1 HETATM 7 C C09 T0D . . . F 2 -9.439 -17.619 40.163 1 52.74 ? C09 T0D 201 B 1 HETATM 8 C C10 T0D . . . F 2 -8.437 -16.641 40.788 1 53.37 ? C10 T0D 201 B 1 HETATM 9 C C11 T0D . . . F 2 -10.803 -16.928 39.933 1 55.09 ? C11 T0D 201 B 1 HETATM 10 C C12 T0D . . . F 2 -9.375 -19.785 36.791 1 52.43 ? C12 T0D 201 B 1 HETATM 11 C C14 T0D . . . F 2 -9.209 -19.663 34.237 1 45.26 ? C14 T0D 201 B 1 HETATM 12 C C15 T0D . . . F 2 -10.365 -20.316 33.391 1 45.36 ? C15 T0D 201 B 1 HETATM 13 C C16 T0D . . . F 2 -11.17 -21.41 34.178 1 49.85 ? C16 T0D 201 B 1 HETATM 14 C C17 T0D . . . F 2 -12.076 -22.2 33.235 1 49.97 ? C17 T0D 201 B 1 HETATM 15 C C19 T0D . . . F 2 -10.329 -23.685 33.775 1 53.38 ? C19 T0D 201 B 1 HETATM 16 C C20 T0D . . . F 2 -10.267 -22.471 34.774 1 50.33 ? C20 T0D 201 B 1 HETATM 17 C C22 T0D . . . F 2 -8.752 -18.418 33.396 1 45.81 ? C22 T0D 201 B 1 HETATM 18 C C26 T0D . . . F 2 -11.168 -24.52 41.67 1 67.43 ? C26 T0D 201 B 1 HETATM 19 C C27 T0D . . . F 2 -13.516 -23.519 41.203 1 66.89 ? C27 T0D 201 B 1 HETATM 20 C C28 T0D . . . F 2 -14.438 -22.928 40.304 1 62.76 ? C28 T0D 201 B 1 HETATM 21 C C29 T0D . . . F 2 -15.483 -22.105 40.779 1 61.67 ? C29 T0D 201 B 1 HETATM 22 C C31 T0D . . . F 2 -15.653 -21.825 42.149 1 60.01 ? C31 T0D 201 B 1 HETATM 23 C C32 T0D . . . F 2 -14.733 -22.399 43.054 1 62.58 ? C32 T0D 201 B 1 HETATM 24 C C33 T0D . . . F 2 -13.672 -23.233 42.589 1 60.68 ? C33 T0D 201 B 1 HETATM 25 N N06 T0D . . . F 2 -10.178 -20.393 39.1 1 56.54 ? N06 T0D 201 B 1 HETATM 26 N N13 T0D . . . F 2 -9.689 -19.187 35.533 1 54.26 ? N13 T0D 201 B 1 HETATM 27 N N18 T0D . . . F 2 -11.597 -23.524 32.993 1 52.1 ? N18 T0D 201 B 1 HETATM 28 O O04 T0D . . . F 2 -11.524 -22.336 39.752 1 56.51 ? O04 T0D 201 B 1 HETATM 29 O O21 T0D . . . F 2 -13.115 -21.763 32.714 1 47.43 ? O21 T0D 201 B 1 HETATM 30 O O23 T0D . . . F 2 -7.508 -17.95 33.982 1 51.08 ? O23 T0D 201 B 1 HETATM 31 O O24 T0D . . . F 2 -8.644 -20.805 36.814 1 51.56 ? O24 T0D 201 B 1 HETATM 32 O O25 T0D . . . F 2 -11.628 -21.524 37.651 1 53.59 ? O25 T0D 201 B 1 HETATM 33 CL CL30 T0D . . . F 2 -16.65 -21.375 39.581 1 71.24 ? CL30 T0D 201 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #