data_6W5T # _model_server_result.job_id Tr-hK_YKLzh6QmeA-eznSQ _model_server_result.datetime_utc '2024-11-22 22:34:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w5t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1421}' # _entry.id 6W5T # _exptl.entry_id 6W5T _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6W5T _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W5T _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 O N N ? 6 P N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 MAN NAG C1 O1 . O3 HO3 . sing 4 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1303 NAG 2 n B NAG 2 B 2 NAG A 1304 NAG 3 n C NAG 1 C 1 NAG A 1306 NAG 3 n C NAG 2 C 2 NAG A 1307 NAG 3 n C MAN 3 C 3 MAN A 1308 MAN 4 n D NAG 1 D 1 NAG A 1311 NAG 4 n D NAG 2 D 2 NAG A 1312 NAG 4 n D BMA 3 D 3 BMA A 1313 MAN 2 n E NAG 1 E 1 NAG A 1321 NAG 2 n E NAG 2 E 2 NAG A 1322 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 25 A CYS 25 1_555 A SG CYS 74 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 63 A CYS 63 1_555 A SG CYS 109 A CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 75 A CYS 75 1_555 A SG CYS 113 A CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 97 A CYS 97 1_555 A SG CYS 238 A CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf5 A SG CYS 100 A CYS 100 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 A SG CYS 177 A CYS 177 1_555 A SG CYS 184 A CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf7 A SG CYS 227 A CYS 227 1_555 A SG CYS 243 A CYS 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf8 A SG CYS 240 A CYS 240 1_555 A SG CYS 247 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf9 A SG CYS 468 A CYS 468 1_555 A SG CYS 479 A CYS 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 A SG CYS 516 A CYS 516 1_555 A SG CYS 533 A CYS 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 A SG CYS 909 A CYS 909 1_555 A SG CYS 914 A CYS 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? disulf ? disulf12 A SG CYS 956 A CYS 956 1_555 A SG CYS 1011 A CYS 1011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf13 A SG CYS 957 A CYS 957 1_555 A SG CYS 979 A CYS 979 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf14 A SG CYS 967 A CYS 967 1_555 A SG CYS 976 A CYS 976 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 158 A ASN 158 1_555 N C1 NAG . A NAG 1419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale2 A ND2 ASN 222 A ASN 222 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 A ND2 ASN 452 A ASN 452 1_555 F C1 NAG . A NAG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 A ND2 ASN 459 A ASN 459 1_555 G C1 NAG . A NAG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 A ND2 ASN 478 A ASN 478 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 A ND2 ASN 524 A ASN 524 1_555 H C1 NAG . A NAG 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale7 A ND2 ASN 557 A ASN 557 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale8 A ND2 ASN 598 A ASN 598 1_555 I C1 NAG . A NAG 1409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale9 A ND2 ASN 916 A ASN 916 1_555 J C1 NAG . A NAG 1410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale10 A ND2 ASN 931 A ASN 931 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale11 A ND2 ASN 961 A ASN 961 1_555 K C1 NAG . A NAG 1414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale12 A ND2 ASN 968 A ASN 968 1_555 L C1 NAG . A NAG 1415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale13 A ND2 ASN 1064 A ASN 1064 1_555 M C1 NAG . A NAG 1416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale14 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale15 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale16 C O3 NAG . C NAG 2 1_555 C C1 MAN . C MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale17 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale18 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale19 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 94 n n C1 C10 CLR sing 95 n n C1 H11 CLR sing 96 n n C1 H12 CLR sing 97 n n C2 C3 CLR sing 98 n n C2 H21 CLR sing 99 n n C2 H22 CLR sing 100 n n C3 C4 CLR sing 101 n n C3 O1 CLR sing 102 n n C3 H3 CLR sing 103 n n C4 C5 CLR sing 104 n n C4 H41 CLR sing 105 n n C4 H42 CLR sing 106 n n C5 C6 CLR doub 107 n n C5 C10 CLR sing 108 n n C6 C7 CLR sing 109 n n C6 H6 CLR sing 110 n n C7 C8 CLR sing 111 n n C7 H71 CLR sing 112 n n C7 H72 CLR sing 113 n n C8 C9 CLR sing 114 n n C8 C14 CLR sing 115 n n C8 H8 CLR sing 116 n n C9 C10 CLR sing 117 n n C9 C11 CLR sing 118 n n C9 H9 CLR sing 119 n n C10 C19 CLR sing 120 n n C11 C12 CLR sing 121 n n C11 H111 CLR sing 122 n n C11 H112 CLR sing 123 n n C12 C13 CLR sing 124 n n C12 H121 CLR sing 125 n n C12 H122 CLR sing 126 n n C13 C14 CLR sing 127 n n C13 C17 CLR sing 128 n n C13 C18 CLR sing 129 n n C14 C15 CLR sing 130 n n C14 H14 CLR sing 131 n n C15 C16 CLR sing 132 n n C15 H151 CLR sing 133 n n C15 H152 CLR sing 134 n n C16 C17 CLR sing 135 n n C16 H161 CLR sing 136 n n C16 H162 CLR sing 137 n n C17 C20 CLR sing 138 n n C17 H17 CLR sing 139 n n C18 H181 CLR sing 140 n n C18 H182 CLR sing 141 n n C18 H183 CLR sing 142 n n C19 H191 CLR sing 143 n n C19 H192 CLR sing 144 n n C19 H193 CLR sing 145 n n C20 C21 CLR sing 146 n n C20 C22 CLR sing 147 n n C20 H20 CLR sing 148 n n C21 H211 CLR sing 149 n n C21 H212 CLR sing 150 n n C21 H213 CLR sing 151 n n C22 C23 CLR sing 152 n n C22 H221 CLR sing 153 n n C22 H222 CLR sing 154 n n C23 C24 CLR sing 155 n n C23 H231 CLR sing 156 n n C23 H232 CLR sing 157 n n C24 C25 CLR sing 158 n n C24 H241 CLR sing 159 n n C24 H242 CLR sing 160 n n C25 C26 CLR sing 161 n n C25 C27 CLR sing 162 n n C25 H25 CLR sing 163 n n C26 H261 CLR sing 164 n n C26 H262 CLR sing 165 n n C26 H263 CLR sing 166 n n C27 H271 CLR sing 167 n n C27 H272 CLR sing 168 n n C27 H273 CLR sing 169 n n O1 H1 CLR sing 170 n n # _atom_sites.entry_id 6W5T _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 NAG A 1 1401 1301 NAG NAG . G 5 NAG A 1 1402 1302 NAG NAG . H 5 NAG A 1 1405 1305 NAG NAG . I 5 NAG A 1 1409 1309 NAG NAG . J 5 NAG A 1 1410 1310 NAG NAG . K 5 NAG A 1 1414 1314 NAG NAG . L 5 NAG A 1 1415 1315 NAG NAG . M 5 NAG A 1 1416 1316 NAG NAG . N 5 NAG A 1 1419 1323 NAG NAG . O 6 CLR A 1 1420 2253 CLR CLR . P 6 CLR A 1 1421 2261 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . P 6 132.069 126.948 148.263 1 63.45 ? C1 CLR 1421 A 1 HETATM 2 C C2 CLR . . . P 6 131.178 127.364 149.427 1 63.45 ? C2 CLR 1421 A 1 HETATM 3 C C3 CLR . . . P 6 130.525 128.694 149.102 1 63.45 ? C3 CLR 1421 A 1 HETATM 4 C C4 CLR . . . P 6 129.614 128.527 147.898 1 63.45 ? C4 CLR 1421 A 1 HETATM 5 C C5 CLR . . . P 6 130.4 127.938 146.759 1 63.45 ? C5 CLR 1421 A 1 HETATM 6 C C6 CLR . . . P 6 130.328 128.542 145.564 1 63.45 ? C6 CLR 1421 A 1 HETATM 7 C C7 CLR . . . P 6 131.145 128.08 144.383 1 63.45 ? C7 CLR 1421 A 1 HETATM 8 C C8 CLR . . . P 6 131.402 126.606 144.532 1 63.45 ? C8 CLR 1421 A 1 HETATM 9 C C9 CLR . . . P 6 132.149 126.402 145.843 1 63.45 ? C9 CLR 1421 A 1 HETATM 10 C C10 CLR . . . P 6 131.237 126.71 147.019 1 63.45 ? C10 CLR 1421 A 1 HETATM 11 C C11 CLR . . . P 6 132.808 125.03 145.968 1 63.45 ? C11 CLR 1421 A 1 HETATM 12 C C12 CLR . . . P 6 133.583 124.703 144.705 1 63.45 ? C12 CLR 1421 A 1 HETATM 13 C C13 CLR . . . P 6 132.631 124.668 143.536 1 63.45 ? C13 CLR 1421 A 1 HETATM 14 C C14 CLR . . . P 6 132.194 126.093 143.346 1 63.45 ? C14 CLR 1421 A 1 HETATM 15 C C15 CLR . . . P 6 131.509 126.093 141.992 1 63.45 ? C15 CLR 1421 A 1 HETATM 16 C C16 CLR . . . P 6 132.333 125.092 141.189 1 63.45 ? C16 CLR 1421 A 1 HETATM 17 C C17 CLR . . . P 6 133.205 124.314 142.174 1 63.45 ? C17 CLR 1421 A 1 HETATM 18 C C18 CLR . . . P 6 131.426 123.784 143.818 1 63.45 ? C18 CLR 1421 A 1 HETATM 19 C C19 CLR . . . P 6 130.309 125.542 147.271 1 63.45 ? C19 CLR 1421 A 1 HETATM 20 C C20 CLR . . . P 6 133.25 122.82 141.871 1 63.45 ? C20 CLR 1421 A 1 HETATM 21 C C21 CLR . . . P 6 134.146 122.129 142.875 1 63.45 ? C21 CLR 1421 A 1 HETATM 22 C C22 CLR . . . P 6 133.697 122.478 140.459 1 63.45 ? C22 CLR 1421 A 1 HETATM 23 C C23 CLR . . . P 6 135.199 122.339 140.295 1 63.45 ? C23 CLR 1421 A 1 HETATM 24 C C24 CLR . . . P 6 135.552 121.994 138.855 1 63.45 ? C24 CLR 1421 A 1 HETATM 25 C C25 CLR . . . P 6 136.016 123.194 138.054 1 63.45 ? C25 CLR 1421 A 1 HETATM 26 C C26 CLR . . . P 6 134.953 124.282 138.13 1 63.45 ? C26 CLR 1421 A 1 HETATM 27 C C27 CLR . . . P 6 137.411 123.654 138.474 1 63.45 ? C27 CLR 1421 A 1 HETATM 28 O O1 CLR . . . P 6 129.781 129.146 150.24 1 63.45 ? O1 CLR 1421 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 390 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #