data_6W5Y
#
_model_server_result.job_id            Pwl2pfgCEH5aasTudSbvRA 
_model_server_result.datetime_utc      '2024-11-04 19:45:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6w5y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":302}' 
#
_entry.id    6W5Y 
#
_exptl.entry_id    6W5Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.28 
_cell.angle_gamma         90 
_cell.entry_id            6W5Y 
_cell.length_a            243.31 
_cell.length_b            37.35 
_cell.length_c            66.99 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6W5Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,G,H,M 1 1 
B,E,I,J,N 2 1 
C,F,K,L,O 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
2 oligosaccharide 
3 oligosaccharide 
4 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
4 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing 
5 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n D NAG 1 D 1 NAG A 302 NAG 
2 n D NAG 2 D 2 NAG A 303 NAG 
2 n D BMA 3 D 3 BMA A 304 BMA 
3 n E NAG 1 E 1 NAG B 295 NAG 
3 n E NAG 2 E 2 NAG B 296 NAG 
3 n E FUC 3 E 3 FUC B 297 FUC 
4 n F NAG 1 F 1 NAG C 294 NAG 
4 n F NAG 2 F 2 NAG C 295 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 72 1_555 A SG CYS 27 A CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 44 A CYS 94 1_555 A SG CYS 59 A CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 A SG CYS 100 A CYS 150 1_555 A SG CYS 105 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf4 B SG CYS 22 B CYS 72 1_555 B SG CYS 27 B CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 B SG CYS 44 B CYS 94 1_555 B SG CYS 59 B CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf6 B SG CYS 100 B CYS 150 1_555 B SG CYS 105 B CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf7 C SG CYS 22 C CYS 72 1_555 C SG CYS 27 C CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf8 C SG CYS 44 C CYS 94 1_555 C SG CYS 59 C CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf9 C SG CYS 100 C CYS 150 1_555 C SG CYS 105 C CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A ND2 ASN 7 A ASN 57 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? 
covale ? covale2 B ND2 ASN 7 B ASN 57 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale3 C ND2 ASN 7 C ASN 57 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale4 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale5 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? 
covale ? covale6 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale7 E O6 NAG . E NAG 1 1_555 E C1 FUC . E FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.479 ? 
covale ? covale8 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 176 n n 
C1 C2 GOL sing 177 n n 
C1 H11 GOL sing 178 n n 
C1 H12 GOL sing 179 n n 
O1 HO1 GOL sing 180 n n 
C2 O2 GOL sing 181 n n 
C2 C3 GOL sing 182 n n 
C2 H2 GOL sing 183 n n 
O2 HO2 GOL sing 184 n n 
C3 O3 GOL sing 185 n n 
C3 H31 GOL sing 186 n n 
C3 H32 GOL sing 187 n n 
O3 HO3 GOL sing 188 n n 
#
_atom_sites.entry_id                     6W5Y 
_atom_sites.fract_transf_matrix[1][1]    0.00411 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000895 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.026774 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015277 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 5 GOL A 1 301 201 GOL GOL . 
H 5 GOL A 1 302 301 GOL GOL . 
I 5 GOL B 1 301 194 GOL GOL . 
J 5 GOL B 1 302 294 GOL GOL . 
K 5 GOL C 1 301 193 GOL GOL . 
L 5 GOL C 1 302 293 GOL GOL . 
M 6 HOH A 1 401 30 HOH HOH . 
M 6 HOH A 2 402 63 HOH HOH . 
M 6 HOH A 3 403 59 HOH HOH . 
M 6 HOH A 4 404 31 HOH HOH . 
M 6 HOH A 5 405 6 HOH HOH . 
M 6 HOH A 6 406 39 HOH HOH . 
M 6 HOH A 7 407 44 HOH HOH . 
M 6 HOH A 8 408 2 HOH HOH . 
M 6 HOH A 9 409 61 HOH HOH . 
M 6 HOH A 10 410 26 HOH HOH . 
M 6 HOH A 11 411 77 HOH HOH . 
M 6 HOH A 12 412 18 HOH HOH . 
M 6 HOH A 13 413 27 HOH HOH . 
M 6 HOH A 14 414 5 HOH HOH . 
M 6 HOH A 15 415 29 HOH HOH . 
M 6 HOH A 16 416 23 HOH HOH . 
M 6 HOH A 17 417 15 HOH HOH . 
M 6 HOH A 18 418 45 HOH HOH . 
M 6 HOH A 19 419 40 HOH HOH . 
M 6 HOH A 20 420 52 HOH HOH . 
M 6 HOH A 21 421 41 HOH HOH . 
M 6 HOH A 22 422 51 HOH HOH . 
M 6 HOH A 23 423 9 HOH HOH . 
M 6 HOH A 24 424 32 HOH HOH . 
M 6 HOH A 25 425 37 HOH HOH . 
M 6 HOH A 26 426 42 HOH HOH . 
M 6 HOH A 27 427 1 HOH HOH . 
M 6 HOH A 28 428 20 HOH HOH . 
M 6 HOH A 29 429 8 HOH HOH . 
M 6 HOH A 30 430 56 HOH HOH . 
M 6 HOH A 31 431 83 HOH HOH . 
M 6 HOH A 32 432 36 HOH HOH . 
M 6 HOH A 33 433 49 HOH HOH . 
M 6 HOH A 34 434 43 HOH HOH . 
M 6 HOH A 35 435 66 HOH HOH . 
M 6 HOH A 36 436 64 HOH HOH . 
M 6 HOH A 37 437 84 HOH HOH . 
N 6 HOH B 1 401 80 HOH HOH . 
N 6 HOH B 2 402 62 HOH HOH . 
N 6 HOH B 3 403 21 HOH HOH . 
N 6 HOH B 4 404 7 HOH HOH . 
N 6 HOH B 5 405 58 HOH HOH . 
N 6 HOH B 6 406 71 HOH HOH . 
N 6 HOH B 7 407 12 HOH HOH . 
N 6 HOH B 8 408 24 HOH HOH . 
N 6 HOH B 9 409 34 HOH HOH . 
N 6 HOH B 10 410 10 HOH HOH . 
N 6 HOH B 11 411 76 HOH HOH . 
N 6 HOH B 12 412 72 HOH HOH . 
N 6 HOH B 13 413 28 HOH HOH . 
N 6 HOH B 14 414 57 HOH HOH . 
N 6 HOH B 15 415 16 HOH HOH . 
N 6 HOH B 16 416 3 HOH HOH . 
N 6 HOH B 17 417 54 HOH HOH . 
N 6 HOH B 18 418 11 HOH HOH . 
N 6 HOH B 19 419 14 HOH HOH . 
N 6 HOH B 20 420 47 HOH HOH . 
N 6 HOH B 21 421 50 HOH HOH . 
N 6 HOH B 22 422 13 HOH HOH . 
N 6 HOH B 23 423 17 HOH HOH . 
N 6 HOH B 24 424 4 HOH HOH . 
N 6 HOH B 25 425 73 HOH HOH . 
N 6 HOH B 26 426 67 HOH HOH . 
N 6 HOH B 27 427 70 HOH HOH . 
N 6 HOH B 28 428 60 HOH HOH . 
N 6 HOH B 29 429 69 HOH HOH . 
N 6 HOH B 30 430 46 HOH HOH . 
N 6 HOH B 31 431 22 HOH HOH . 
N 6 HOH B 32 432 25 HOH HOH . 
N 6 HOH B 33 433 68 HOH HOH . 
N 6 HOH B 34 434 48 HOH HOH . 
N 6 HOH B 35 435 33 HOH HOH . 
O 6 HOH C 1 401 55 HOH HOH . 
O 6 HOH C 2 402 65 HOH HOH . 
O 6 HOH C 3 403 19 HOH HOH . 
O 6 HOH C 4 404 78 HOH HOH . 
O 6 HOH C 5 405 53 HOH HOH . 
O 6 HOH C 6 406 82 HOH HOH . 
O 6 HOH C 7 407 35 HOH HOH . 
O 6 HOH C 8 408 38 HOH HOH . 
O 6 HOH C 9 409 81 HOH HOH . 
O 6 HOH C 10 410 74 HOH HOH . 
O 6 HOH C 11 411 75 HOH HOH . 
O 6 HOH C 12 412 79 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 5 -53.826 -4.446 47.673 1 48.73 ? C1 GOL 302 A 1 
HETATM 2 O O1 GOL . . . H 5 -54.172 -3.609 46.62 1 49.94 ? O1 GOL 302 A 1 
HETATM 3 C C2 GOL . . . H 5 -52.917 -5.558 47.094 1 47.73 ? C2 GOL 302 A 1 
HETATM 4 O O2 GOL . . . H 5 -51.643 -5.089 46.783 1 47.9 ? O2 GOL 302 A 1 
HETATM 5 C C3 GOL . . . H 5 -53.688 -6.104 45.861 1 45.47 ? C3 GOL 302 A 1 
HETATM 6 O O3 GOL . . . H 5 -53.093 -5.578 44.723 1 42.9 ? O3 GOL 302 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           39 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#