data_6W65 # _model_server_result.job_id 5E7-mEBNytWbsMUeI5xqVw _model_server_result.datetime_utc '2024-11-26 05:47:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w65 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":307}' # _entry.id 6W65 # _exptl.entry_id 6W65 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6W65 _cell.length_a 147.12 _cell.length_b 147.12 _cell.length_c 99.44 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W65 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,Y 1 1 B,K,L,M,N,O,P,Q,R,S,T,Z 2 1 C,U,V,W,X,AA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 V N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 158 n n C1 C2 GOL sing 159 n n C1 H11 GOL sing 160 n n C1 H12 GOL sing 161 n n O1 HO1 GOL sing 162 n n C2 O2 GOL sing 163 n n C2 C3 GOL sing 164 n n C2 H2 GOL sing 165 n n O2 HO2 GOL sing 166 n n C3 O3 GOL sing 167 n n C3 H31 GOL sing 168 n n C3 H32 GOL sing 169 n n O3 HO3 GOL sing 170 n n # _atom_sites.entry_id 6W65 _atom_sites.fract_transf_matrix[1][1] 0.006797 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006797 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010056 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 T9D A 1 301 1 T9D LIG . E 3 CIT A 1 302 1 CIT CIT . F 4 GOL A 1 303 2 GOL GOL . G 4 GOL A 1 304 3 GOL GOL . H 4 GOL A 1 305 8 GOL GOL . I 4 GOL A 1 306 9 GOL GOL . J 5 EDO A 1 307 4 EDO EDO . K 2 T9D B 1 301 2 T9D LIG . L 3 CIT B 1 302 2 CIT CIT . M 4 GOL B 1 303 4 GOL GOL . N 4 GOL B 1 304 5 GOL GOL . O 4 GOL B 1 305 6 GOL GOL . P 4 GOL B 1 306 7 GOL GOL . Q 4 GOL B 1 307 10 GOL GOL . R 6 PEG B 1 308 1 PEG PEG . S 5 EDO B 1 309 2 EDO EDO . T 5 EDO B 1 310 3 EDO EDO . U 2 T9D C 1 301 3 T9D LIG . V 4 GOL C 1 302 1 GOL GOL . W 6 PEG C 1 303 2 PEG PEG . X 5 EDO C 1 304 1 EDO EDO . Y 7 HOH A 1 401 158 HOH HOH . Y 7 HOH A 2 402 206 HOH HOH . Y 7 HOH A 3 403 176 HOH HOH . Y 7 HOH A 4 404 134 HOH HOH . Y 7 HOH A 5 405 171 HOH HOH . Y 7 HOH A 6 406 10 HOH HOH . Y 7 HOH A 7 407 30 HOH HOH . Y 7 HOH A 8 408 211 HOH HOH . Y 7 HOH A 9 409 182 HOH HOH . Y 7 HOH A 10 410 209 HOH HOH . Y 7 HOH A 11 411 81 HOH HOH . Y 7 HOH A 12 412 54 HOH HOH . Y 7 HOH A 13 413 127 HOH HOH . Y 7 HOH A 14 414 136 HOH HOH . Y 7 HOH A 15 415 33 HOH HOH . Y 7 HOH A 16 416 4 HOH HOH . Y 7 HOH A 17 417 149 HOH HOH . Y 7 HOH A 18 418 57 HOH HOH . Y 7 HOH A 19 419 139 HOH HOH . Y 7 HOH A 20 420 25 HOH HOH . Y 7 HOH A 21 421 65 HOH HOH . Y 7 HOH A 22 422 107 HOH HOH . Y 7 HOH A 23 423 12 HOH HOH . Y 7 HOH A 24 424 146 HOH HOH . Y 7 HOH A 25 425 28 HOH HOH . Y 7 HOH A 26 426 205 HOH HOH . Y 7 HOH A 27 427 22 HOH HOH . Y 7 HOH A 28 428 44 HOH HOH . Y 7 HOH A 29 429 46 HOH HOH . Y 7 HOH A 30 430 59 HOH HOH . Y 7 HOH A 31 431 234 HOH HOH . Y 7 HOH A 32 432 67 HOH HOH . Y 7 HOH A 33 433 58 HOH HOH . Y 7 HOH A 34 434 23 HOH HOH . Y 7 HOH A 35 435 37 HOH HOH . Y 7 HOH A 36 436 1 HOH HOH . Y 7 HOH A 37 437 186 HOH HOH . Y 7 HOH A 38 438 70 HOH HOH . Y 7 HOH A 39 439 196 HOH HOH . Y 7 HOH A 40 440 35 HOH HOH . Y 7 HOH A 41 441 115 HOH HOH . Y 7 HOH A 42 442 203 HOH HOH . Y 7 HOH A 43 443 213 HOH HOH . Y 7 HOH A 44 444 174 HOH HOH . Y 7 HOH A 45 445 141 HOH HOH . Y 7 HOH A 46 446 79 HOH HOH . Y 7 HOH A 47 447 83 HOH HOH . Y 7 HOH A 48 448 8 HOH HOH . Y 7 HOH A 49 449 137 HOH HOH . Y 7 HOH A 50 450 193 HOH HOH . Y 7 HOH A 51 451 207 HOH HOH . Y 7 HOH A 52 452 78 HOH HOH . Y 7 HOH A 53 453 194 HOH HOH . Y 7 HOH A 54 454 34 HOH HOH . Y 7 HOH A 55 455 248 HOH HOH . Y 7 HOH A 56 456 253 HOH HOH . Y 7 HOH A 57 457 175 HOH HOH . Y 7 HOH A 58 458 39 HOH HOH . Y 7 HOH A 59 459 31 HOH HOH . Y 7 HOH A 60 460 109 HOH HOH . Y 7 HOH A 61 461 231 HOH HOH . Y 7 HOH A 62 462 47 HOH HOH . Y 7 HOH A 63 463 129 HOH HOH . Y 7 HOH A 64 464 122 HOH HOH . Y 7 HOH A 65 465 183 HOH HOH . Y 7 HOH A 66 466 250 HOH HOH . Y 7 HOH A 67 467 215 HOH HOH . Y 7 HOH A 68 468 138 HOH HOH . Y 7 HOH A 69 469 48 HOH HOH . Y 7 HOH A 70 470 166 HOH HOH . Y 7 HOH A 71 471 13 HOH HOH . Y 7 HOH A 72 472 9 HOH HOH . Y 7 HOH A 73 473 162 HOH HOH . Y 7 HOH A 74 474 229 HOH HOH . Y 7 HOH A 75 475 214 HOH HOH . Y 7 HOH A 76 476 177 HOH HOH . Y 7 HOH A 77 477 32 HOH HOH . Y 7 HOH A 78 478 278 HOH HOH . Y 7 HOH A 79 479 245 HOH HOH . Y 7 HOH A 80 480 243 HOH HOH . Y 7 HOH A 81 481 252 HOH HOH . Y 7 HOH A 82 482 152 HOH HOH . Y 7 HOH A 83 483 41 HOH HOH . Y 7 HOH A 84 484 150 HOH HOH . Y 7 HOH A 85 485 276 HOH HOH . Y 7 HOH A 86 486 125 HOH HOH . Y 7 HOH A 87 487 261 HOH HOH . Y 7 HOH A 88 488 281 HOH HOH . Y 7 HOH A 89 489 52 HOH HOH . Y 7 HOH A 90 490 192 HOH HOH . Y 7 HOH A 91 491 98 HOH HOH . Y 7 HOH A 92 492 163 HOH HOH . Y 7 HOH A 93 493 62 HOH HOH . Y 7 HOH A 94 494 249 HOH HOH . Y 7 HOH A 95 495 274 HOH HOH . Y 7 HOH A 96 496 132 HOH HOH . Y 7 HOH A 97 497 49 HOH HOH . Y 7 HOH A 98 498 204 HOH HOH . Y 7 HOH A 99 499 247 HOH HOH . Y 7 HOH A 100 500 227 HOH HOH . Y 7 HOH A 101 501 124 HOH HOH . Y 7 HOH A 102 502 42 HOH HOH . Y 7 HOH A 103 503 185 HOH HOH . Y 7 HOH A 104 504 45 HOH HOH . Y 7 HOH A 105 505 230 HOH HOH . Y 7 HOH A 106 506 219 HOH HOH . Y 7 HOH A 107 507 130 HOH HOH . Y 7 HOH A 108 508 85 HOH HOH . Y 7 HOH A 109 509 173 HOH HOH . Y 7 HOH A 110 510 224 HOH HOH . Y 7 HOH A 111 511 104 HOH HOH . Y 7 HOH A 112 512 220 HOH HOH . Y 7 HOH A 113 513 100 HOH HOH . Y 7 HOH A 114 514 96 HOH HOH . Y 7 HOH A 115 515 262 HOH HOH . Y 7 HOH A 116 516 181 HOH HOH . Y 7 HOH A 117 517 97 HOH HOH . Y 7 HOH A 118 518 260 HOH HOH . Y 7 HOH A 119 519 244 HOH HOH . Y 7 HOH A 120 520 191 HOH HOH . Y 7 HOH A 121 521 155 HOH HOH . Y 7 HOH A 122 522 88 HOH HOH . Y 7 HOH A 123 523 263 HOH HOH . Y 7 HOH A 124 524 246 HOH HOH . Z 7 HOH B 1 401 226 HOH HOH . Z 7 HOH B 2 402 61 HOH HOH . Z 7 HOH B 3 403 223 HOH HOH . Z 7 HOH B 4 404 198 HOH HOH . Z 7 HOH B 5 405 240 HOH HOH . Z 7 HOH B 6 406 116 HOH HOH . Z 7 HOH B 7 407 212 HOH HOH . Z 7 HOH B 8 408 235 HOH HOH . Z 7 HOH B 9 409 143 HOH HOH . Z 7 HOH B 10 410 50 HOH HOH . Z 7 HOH B 11 411 200 HOH HOH . Z 7 HOH B 12 412 251 HOH HOH . Z 7 HOH B 13 413 27 HOH HOH . Z 7 HOH B 14 414 77 HOH HOH . Z 7 HOH B 15 415 105 HOH HOH . Z 7 HOH B 16 416 165 HOH HOH . Z 7 HOH B 17 417 169 HOH HOH . Z 7 HOH B 18 418 43 HOH HOH . Z 7 HOH B 19 419 168 HOH HOH . Z 7 HOH B 20 420 40 HOH HOH . Z 7 HOH B 21 421 201 HOH HOH . Z 7 HOH B 22 422 20 HOH HOH . Z 7 HOH B 23 423 161 HOH HOH . Z 7 HOH B 24 424 106 HOH HOH . Z 7 HOH B 25 425 112 HOH HOH . Z 7 HOH B 26 426 236 HOH HOH . Z 7 HOH B 27 427 7 HOH HOH . Z 7 HOH B 28 428 145 HOH HOH . Z 7 HOH B 29 429 184 HOH HOH . Z 7 HOH B 30 430 264 HOH HOH . Z 7 HOH B 31 431 144 HOH HOH . Z 7 HOH B 32 432 6 HOH HOH . Z 7 HOH B 33 433 71 HOH HOH . Z 7 HOH B 34 434 154 HOH HOH . Z 7 HOH B 35 435 73 HOH HOH . Z 7 HOH B 36 436 119 HOH HOH . Z 7 HOH B 37 437 153 HOH HOH . Z 7 HOH B 38 438 157 HOH HOH . Z 7 HOH B 39 439 68 HOH HOH . Z 7 HOH B 40 440 36 HOH HOH . Z 7 HOH B 41 441 170 HOH HOH . Z 7 HOH B 42 442 225 HOH HOH . Z 7 HOH B 43 443 29 HOH HOH . Z 7 HOH B 44 444 255 HOH HOH . Z 7 HOH B 45 445 38 HOH HOH . Z 7 HOH B 46 446 239 HOH HOH . Z 7 HOH B 47 447 126 HOH HOH . Z 7 HOH B 48 448 74 HOH HOH . Z 7 HOH B 49 449 140 HOH HOH . Z 7 HOH B 50 450 221 HOH HOH . Z 7 HOH B 51 451 103 HOH HOH . Z 7 HOH B 52 452 159 HOH HOH . Z 7 HOH B 53 453 3 HOH HOH . Z 7 HOH B 54 454 66 HOH HOH . Z 7 HOH B 55 455 142 HOH HOH . Z 7 HOH B 56 456 254 HOH HOH . Z 7 HOH B 57 457 190 HOH HOH . Z 7 HOH B 58 458 84 HOH HOH . Z 7 HOH B 59 459 156 HOH HOH . Z 7 HOH B 60 460 5 HOH HOH . Z 7 HOH B 61 461 75 HOH HOH . Z 7 HOH B 62 462 108 HOH HOH . Z 7 HOH B 63 463 180 HOH HOH . Z 7 HOH B 64 464 56 HOH HOH . Z 7 HOH B 65 465 258 HOH HOH . Z 7 HOH B 66 466 202 HOH HOH . Z 7 HOH B 67 467 19 HOH HOH . Z 7 HOH B 68 468 82 HOH HOH . Z 7 HOH B 69 469 232 HOH HOH . Z 7 HOH B 70 470 187 HOH HOH . Z 7 HOH B 71 471 128 HOH HOH . Z 7 HOH B 72 472 210 HOH HOH . Z 7 HOH B 73 473 89 HOH HOH . Z 7 HOH B 74 474 133 HOH HOH . Z 7 HOH B 75 475 238 HOH HOH . Z 7 HOH B 76 476 131 HOH HOH . Z 7 HOH B 77 477 259 HOH HOH . Z 7 HOH B 78 478 277 HOH HOH . Z 7 HOH B 79 479 241 HOH HOH . Z 7 HOH B 80 480 102 HOH HOH . AA 7 HOH C 1 401 237 HOH HOH . AA 7 HOH C 2 402 151 HOH HOH . AA 7 HOH C 3 403 72 HOH HOH . AA 7 HOH C 4 404 275 HOH HOH . AA 7 HOH C 5 405 118 HOH HOH . AA 7 HOH C 6 406 114 HOH HOH . AA 7 HOH C 7 407 2 HOH HOH . AA 7 HOH C 8 408 188 HOH HOH . AA 7 HOH C 9 409 160 HOH HOH . AA 7 HOH C 10 410 208 HOH HOH . AA 7 HOH C 11 411 18 HOH HOH . AA 7 HOH C 12 412 117 HOH HOH . AA 7 HOH C 13 413 178 HOH HOH . AA 7 HOH C 14 414 179 HOH HOH . AA 7 HOH C 15 415 110 HOH HOH . AA 7 HOH C 16 416 87 HOH HOH . AA 7 HOH C 17 417 69 HOH HOH . AA 7 HOH C 18 418 121 HOH HOH . AA 7 HOH C 19 419 216 HOH HOH . AA 7 HOH C 20 420 147 HOH HOH . AA 7 HOH C 21 421 14 HOH HOH . AA 7 HOH C 22 422 21 HOH HOH . AA 7 HOH C 23 423 111 HOH HOH . AA 7 HOH C 24 424 60 HOH HOH . AA 7 HOH C 25 425 167 HOH HOH . AA 7 HOH C 26 426 51 HOH HOH . AA 7 HOH C 27 427 256 HOH HOH . AA 7 HOH C 28 428 135 HOH HOH . AA 7 HOH C 29 429 63 HOH HOH . AA 7 HOH C 30 430 16 HOH HOH . AA 7 HOH C 31 431 15 HOH HOH . AA 7 HOH C 32 432 80 HOH HOH . AA 7 HOH C 33 433 24 HOH HOH . AA 7 HOH C 34 434 189 HOH HOH . AA 7 HOH C 35 435 123 HOH HOH . AA 7 HOH C 36 436 53 HOH HOH . AA 7 HOH C 37 437 93 HOH HOH . AA 7 HOH C 38 438 148 HOH HOH . AA 7 HOH C 39 439 273 HOH HOH . AA 7 HOH C 40 440 26 HOH HOH . AA 7 HOH C 41 441 64 HOH HOH . AA 7 HOH C 42 442 113 HOH HOH . AA 7 HOH C 43 443 92 HOH HOH . AA 7 HOH C 44 444 197 HOH HOH . AA 7 HOH C 45 445 90 HOH HOH . AA 7 HOH C 46 446 86 HOH HOH . AA 7 HOH C 47 447 257 HOH HOH . AA 7 HOH C 48 448 55 HOH HOH . AA 7 HOH C 49 449 11 HOH HOH . AA 7 HOH C 50 450 271 HOH HOH . AA 7 HOH C 51 451 95 HOH HOH . AA 7 HOH C 52 452 94 HOH HOH . AA 7 HOH C 53 453 91 HOH HOH . AA 7 HOH C 54 454 222 HOH HOH . AA 7 HOH C 55 455 228 HOH HOH . AA 7 HOH C 56 456 199 HOH HOH . AA 7 HOH C 57 457 99 HOH HOH . AA 7 HOH C 58 458 101 HOH HOH . AA 7 HOH C 59 459 217 HOH HOH . AA 7 HOH C 60 460 270 HOH HOH . AA 7 HOH C 61 461 17 HOH HOH . AA 7 HOH C 62 462 172 HOH HOH . AA 7 HOH C 63 463 265 HOH HOH . AA 7 HOH C 64 464 266 HOH HOH . AA 7 HOH C 65 465 233 HOH HOH . AA 7 HOH C 66 466 76 HOH HOH . AA 7 HOH C 67 467 279 HOH HOH . AA 7 HOH C 68 468 164 HOH HOH . AA 7 HOH C 69 469 272 HOH HOH . AA 7 HOH C 70 470 195 HOH HOH . AA 7 HOH C 71 471 269 HOH HOH . AA 7 HOH C 72 472 268 HOH HOH . AA 7 HOH C 73 473 267 HOH HOH . AA 7 HOH C 74 474 242 HOH HOH . AA 7 HOH C 75 475 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . Q 4 -114.796 117.846 6.247 0.8 67.93 ? C1 GOL 307 B 1 HETATM 2 O O1 GOL . . . Q 4 -114.492 116.494 6.585 0.8 50.9 ? O1 GOL 307 B 1 HETATM 3 C C2 GOL . . . Q 4 -113.759 118.783 6.819 0.8 55.81 ? C2 GOL 307 B 1 HETATM 4 O O2 GOL . . . Q 4 -112.566 118.507 6.103 0.8 54.83 ? O2 GOL 307 B 1 HETATM 5 C C3 GOL . . . Q 4 -114.109 120.266 6.785 0.8 63.08 ? C3 GOL 307 B 1 HETATM 6 O O3 GOL . . . Q 4 -113.882 120.933 8.035 0.8 42.49 ? O3 GOL 307 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #