data_6W6D # _model_server_result.job_id YTTufe9-cM9kkfryxQKgiA _model_server_result.datetime_utc '2024-11-26 12:18:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w6d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6W6D # _exptl.entry_id 6W6D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6W6D _cell.length_a 94.603 _cell.length_b 94.603 _cell.length_c 108.094 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W6D _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 94.603 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 51 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 50 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 230 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 229 _struct_conn.ptnr2_symmetry 6_565 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.605 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 6W6D _atom_sites.fract_transf_matrix[1][1] 0.01057 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01057 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009251 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 401 401 SAH SAH . C 3 T9A A 1 402 501 T9A XXX . D 4 HOH A 1 501 47 HOH HOH . D 4 HOH A 2 502 79 HOH HOH . D 4 HOH A 3 503 13 HOH HOH . D 4 HOH A 4 504 88 HOH HOH . D 4 HOH A 5 505 103 HOH HOH . D 4 HOH A 6 506 30 HOH HOH . D 4 HOH A 7 507 110 HOH HOH . D 4 HOH A 8 508 123 HOH HOH . D 4 HOH A 9 509 44 HOH HOH . D 4 HOH A 10 510 50 HOH HOH . D 4 HOH A 11 511 95 HOH HOH . D 4 HOH A 12 512 9 HOH HOH . D 4 HOH A 13 513 116 HOH HOH . D 4 HOH A 14 514 46 HOH HOH . D 4 HOH A 15 515 8 HOH HOH . D 4 HOH A 16 516 78 HOH HOH . D 4 HOH A 17 517 107 HOH HOH . D 4 HOH A 18 518 40 HOH HOH . D 4 HOH A 19 519 41 HOH HOH . D 4 HOH A 20 520 43 HOH HOH . D 4 HOH A 21 521 124 HOH HOH . D 4 HOH A 22 522 16 HOH HOH . D 4 HOH A 23 523 100 HOH HOH . D 4 HOH A 24 524 7 HOH HOH . D 4 HOH A 25 525 34 HOH HOH . D 4 HOH A 26 526 66 HOH HOH . D 4 HOH A 27 527 54 HOH HOH . D 4 HOH A 28 528 109 HOH HOH . D 4 HOH A 29 529 33 HOH HOH . D 4 HOH A 30 530 64 HOH HOH . D 4 HOH A 31 531 67 HOH HOH . D 4 HOH A 32 532 87 HOH HOH . D 4 HOH A 33 533 96 HOH HOH . D 4 HOH A 34 534 23 HOH HOH . D 4 HOH A 35 535 49 HOH HOH . D 4 HOH A 36 536 62 HOH HOH . D 4 HOH A 37 537 12 HOH HOH . D 4 HOH A 38 538 72 HOH HOH . D 4 HOH A 39 539 94 HOH HOH . D 4 HOH A 40 540 129 HOH HOH . D 4 HOH A 41 541 55 HOH HOH . D 4 HOH A 42 542 131 HOH HOH . D 4 HOH A 43 543 73 HOH HOH . D 4 HOH A 44 544 14 HOH HOH . D 4 HOH A 45 545 15 HOH HOH . D 4 HOH A 46 546 102 HOH HOH . D 4 HOH A 47 547 6 HOH HOH . D 4 HOH A 48 548 93 HOH HOH . D 4 HOH A 49 549 70 HOH HOH . D 4 HOH A 50 550 17 HOH HOH . D 4 HOH A 51 551 51 HOH HOH . D 4 HOH A 52 552 80 HOH HOH . D 4 HOH A 53 553 22 HOH HOH . D 4 HOH A 54 554 21 HOH HOH . D 4 HOH A 55 555 118 HOH HOH . D 4 HOH A 56 556 75 HOH HOH . D 4 HOH A 57 557 115 HOH HOH . D 4 HOH A 58 558 97 HOH HOH . D 4 HOH A 59 559 1 HOH HOH . D 4 HOH A 60 560 106 HOH HOH . D 4 HOH A 61 561 83 HOH HOH . D 4 HOH A 62 562 27 HOH HOH . D 4 HOH A 63 563 121 HOH HOH . D 4 HOH A 64 564 105 HOH HOH . D 4 HOH A 65 565 25 HOH HOH . D 4 HOH A 66 566 89 HOH HOH . D 4 HOH A 67 567 60 HOH HOH . D 4 HOH A 68 568 68 HOH HOH . D 4 HOH A 69 569 10 HOH HOH . D 4 HOH A 70 570 38 HOH HOH . D 4 HOH A 71 571 19 HOH HOH . D 4 HOH A 72 572 28 HOH HOH . D 4 HOH A 73 573 35 HOH HOH . D 4 HOH A 74 574 29 HOH HOH . D 4 HOH A 75 575 132 HOH HOH . D 4 HOH A 76 576 26 HOH HOH . D 4 HOH A 77 577 108 HOH HOH . D 4 HOH A 78 578 104 HOH HOH . D 4 HOH A 79 579 82 HOH HOH . D 4 HOH A 80 580 126 HOH HOH . D 4 HOH A 81 581 134 HOH HOH . D 4 HOH A 82 582 39 HOH HOH . D 4 HOH A 83 583 11 HOH HOH . D 4 HOH A 84 584 57 HOH HOH . D 4 HOH A 85 585 112 HOH HOH . D 4 HOH A 86 586 85 HOH HOH . D 4 HOH A 87 587 81 HOH HOH . D 4 HOH A 88 588 5 HOH HOH . D 4 HOH A 89 589 52 HOH HOH . D 4 HOH A 90 590 101 HOH HOH . D 4 HOH A 91 591 53 HOH HOH . D 4 HOH A 92 592 77 HOH HOH . D 4 HOH A 93 593 127 HOH HOH . D 4 HOH A 94 594 2 HOH HOH . D 4 HOH A 95 595 111 HOH HOH . D 4 HOH A 96 596 31 HOH HOH . D 4 HOH A 97 597 74 HOH HOH . D 4 HOH A 98 598 3 HOH HOH . D 4 HOH A 99 599 4 HOH HOH . D 4 HOH A 100 600 42 HOH HOH . D 4 HOH A 101 601 86 HOH HOH . D 4 HOH A 102 602 48 HOH HOH . D 4 HOH A 103 603 133 HOH HOH . D 4 HOH A 104 604 99 HOH HOH . D 4 HOH A 105 605 69 HOH HOH . D 4 HOH A 106 606 20 HOH HOH . D 4 HOH A 107 607 122 HOH HOH . D 4 HOH A 108 608 84 HOH HOH . D 4 HOH A 109 609 18 HOH HOH . D 4 HOH A 110 610 58 HOH HOH . D 4 HOH A 111 611 32 HOH HOH . D 4 HOH A 112 612 65 HOH HOH . D 4 HOH A 113 613 128 HOH HOH . D 4 HOH A 114 614 76 HOH HOH . D 4 HOH A 115 615 36 HOH HOH . D 4 HOH A 116 616 117 HOH HOH . D 4 HOH A 117 617 56 HOH HOH . D 4 HOH A 118 618 63 HOH HOH . D 4 HOH A 119 619 120 HOH HOH . D 4 HOH A 120 620 91 HOH HOH . D 4 HOH A 121 621 45 HOH HOH . D 4 HOH A 122 622 98 HOH HOH . D 4 HOH A 123 623 71 HOH HOH . D 4 HOH A 124 624 125 HOH HOH . D 4 HOH A 125 625 59 HOH HOH . D 4 HOH A 126 626 113 HOH HOH . D 4 HOH A 127 627 37 HOH HOH . D 4 HOH A 128 628 119 HOH HOH . D 4 HOH A 129 629 61 HOH HOH . D 4 HOH A 130 630 92 HOH HOH . D 4 HOH A 131 631 114 HOH HOH . D 4 HOH A 132 632 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 20.342 58.489 5.488 1 47.24 ? N SAH 401 A 1 HETATM 2 C CA SAH . . . B 2 19.007 58.802 4.914 1 47.43 ? CA SAH 401 A 1 HETATM 3 C CB SAH . . . B 2 18.335 57.519 4.407 1 46.37 ? CB SAH 401 A 1 HETATM 4 C CG SAH . . . B 2 17.136 57.761 3.516 1 49.56 ? CG SAH 401 A 1 HETATM 5 S SD SAH . . . B 2 16.571 56.217 2.752 1 45.16 ? SD SAH 401 A 1 HETATM 6 C C SAH . . . B 2 18.14 59.494 5.983 1 46.07 ? C SAH 401 A 1 HETATM 7 O O SAH . . . B 2 17.016 59.909 5.64 1 50.47 ? O SAH 401 A 1 HETATM 8 O OXT SAH . . . B 2 18.636 59.649 7.11 1 49.41 ? OXT SAH 401 A 1 HETATM 9 C C5' SAH . . . B 2 17.755 56.062 1.389 1 40.92 ? C5' SAH 401 A 1 HETATM 10 C C4' SAH . . . B 2 17.664 57.188 0.373 1 37.77 ? C4' SAH 401 A 1 HETATM 11 O O4' SAH . . . B 2 18.552 56.893 -0.728 1 36.2 ? O4' SAH 401 A 1 HETATM 12 C C3' SAH . . . B 2 16.283 57.417 -0.258 1 39.22 ? C3' SAH 401 A 1 HETATM 13 O O3' SAH . . . B 2 15.85 58.718 0.127 1 37.41 ? O3' SAH 401 A 1 HETATM 14 C C2' SAH . . . B 2 16.512 57.206 -1.769 1 38.33 ? C2' SAH 401 A 1 HETATM 15 O O2' SAH . . . B 2 15.788 58.104 -2.582 1 39.57 ? O2' SAH 401 A 1 HETATM 16 C C1' SAH . . . B 2 18.009 57.459 -1.895 1 35.41 ? C1' SAH 401 A 1 HETATM 17 N N9 SAH . . . B 2 18.682 56.844 -3.032 1 33.95 ? N9 SAH 401 A 1 HETATM 18 C C8 SAH . . . B 2 18.495 55.564 -3.494 1 37.57 ? C8 SAH 401 A 1 HETATM 19 N N7 SAH . . . B 2 19.29 55.249 -4.486 1 35.68 ? N7 SAH 401 A 1 HETATM 20 C C5 SAH . . . B 2 20.051 56.392 -4.699 1 33.63 ? C5 SAH 401 A 1 HETATM 21 C C6 SAH . . . B 2 21.064 56.693 -5.635 1 33.93 ? C6 SAH 401 A 1 HETATM 22 N N6 SAH . . . B 2 21.505 55.815 -6.538 1 34.18 ? N6 SAH 401 A 1 HETATM 23 N N1 SAH . . . B 2 21.651 57.916 -5.559 1 33.25 ? N1 SAH 401 A 1 HETATM 24 C C2 SAH . . . B 2 21.177 58.787 -4.657 1 32.43 ? C2 SAH 401 A 1 HETATM 25 N N3 SAH . . . B 2 20.21 58.619 -3.752 1 31.58 ? N3 SAH 401 A 1 HETATM 26 C C4 SAH . . . B 2 19.687 57.384 -3.809 1 31.05 ? C4 SAH 401 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #