data_6W6D # _model_server_result.job_id m5l9fqitPjWfNSIfNgRP2Q _model_server_result.datetime_utc '2024-11-22 23:13:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w6d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6W6D # _exptl.entry_id 6W6D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 469.394 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5R)-4-(5-bromothiophene-2-carbonyl)-5-(3,5-dimethylphenyl)-7-methyl-1,3,4,5-tetrahydro-2H-1,4-benzodiazepin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6W6D _cell.length_a 94.603 _cell.length_b 94.603 _cell.length_c 108.094 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W6D _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 94.603 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 51 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 50 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 230 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 229 _struct_conn.ptnr2_symmetry 6_565 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.605 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H21 Br N2 O2 S' _chem_comp.formula_weight 469.394 _chem_comp.id T9A _chem_comp.mon_nstd_flag . _chem_comp.name (5R)-4-(5-bromothiophene-2-carbonyl)-5-(3,5-dimethylphenyl)-7-methyl-1,3,4,5-tetrahydro-2H-1,4-benzodiazepin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C13 T9A sing 338 n n C15 C13 T9A doub 339 n y C15 C16 T9A sing 340 n y C13 C12 T9A sing 341 n y C16 C17 T9A doub 342 n y C12 C11 T9A doub 343 n y C17 C11 T9A sing 344 n y C17 N1 T9A sing 345 n n C11 C2 T9A sing 346 n n N1 C T9A sing 347 n n C1 C T9A sing 348 n n C1 N T9A sing 349 n n C O T9A doub 350 n n O1 C18 T9A doub 351 n n N C2 T9A sing 352 n n N C18 T9A sing 353 n n C2 C3 T9A sing 354 n n C18 C19 T9A sing 355 n n S C19 T9A sing 356 n y S C22 T9A sing 357 n y C19 C20 T9A doub 358 n y C3 C4 T9A doub 359 n y C3 C10 T9A sing 360 n y C4 C5 T9A sing 361 n y C22 BR T9A sing 362 n n C22 C21 T9A doub 363 n y C20 C21 T9A sing 364 n y C10 C8 T9A doub 365 n y C5 C6 T9A sing 366 n n C5 C7 T9A doub 367 n y C8 C7 T9A sing 368 n y C8 C9 T9A sing 369 n n C4 H1 T9A sing 370 n n C6 H2 T9A sing 371 n n C6 H3 T9A sing 372 n n C6 H4 T9A sing 373 n n N1 H5 T9A sing 374 n n C7 H6 T9A sing 375 n n C9 H7 T9A sing 376 n n C9 H8 T9A sing 377 n n C9 H9 T9A sing 378 n n C10 H10 T9A sing 379 n n C12 H11 T9A sing 380 n n C14 H12 T9A sing 381 n n C14 H13 T9A sing 382 n n C14 H14 T9A sing 383 n n C15 H15 T9A sing 384 n n C21 H16 T9A sing 385 n n C20 H17 T9A sing 386 n n C1 H18 T9A sing 387 n n C1 H19 T9A sing 388 n n C2 H20 T9A sing 389 n n C16 H21 T9A sing 390 n n # _atom_sites.entry_id 6W6D _atom_sites.fract_transf_matrix[1][1] 0.01057 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01057 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009251 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 401 401 SAH SAH . C 3 T9A A 1 402 501 T9A XXX . D 4 HOH A 1 501 47 HOH HOH . D 4 HOH A 2 502 79 HOH HOH . D 4 HOH A 3 503 13 HOH HOH . D 4 HOH A 4 504 88 HOH HOH . D 4 HOH A 5 505 103 HOH HOH . D 4 HOH A 6 506 30 HOH HOH . D 4 HOH A 7 507 110 HOH HOH . D 4 HOH A 8 508 123 HOH HOH . D 4 HOH A 9 509 44 HOH HOH . D 4 HOH A 10 510 50 HOH HOH . D 4 HOH A 11 511 95 HOH HOH . D 4 HOH A 12 512 9 HOH HOH . D 4 HOH A 13 513 116 HOH HOH . D 4 HOH A 14 514 46 HOH HOH . D 4 HOH A 15 515 8 HOH HOH . D 4 HOH A 16 516 78 HOH HOH . D 4 HOH A 17 517 107 HOH HOH . D 4 HOH A 18 518 40 HOH HOH . D 4 HOH A 19 519 41 HOH HOH . D 4 HOH A 20 520 43 HOH HOH . D 4 HOH A 21 521 124 HOH HOH . D 4 HOH A 22 522 16 HOH HOH . D 4 HOH A 23 523 100 HOH HOH . D 4 HOH A 24 524 7 HOH HOH . D 4 HOH A 25 525 34 HOH HOH . D 4 HOH A 26 526 66 HOH HOH . D 4 HOH A 27 527 54 HOH HOH . D 4 HOH A 28 528 109 HOH HOH . D 4 HOH A 29 529 33 HOH HOH . D 4 HOH A 30 530 64 HOH HOH . D 4 HOH A 31 531 67 HOH HOH . D 4 HOH A 32 532 87 HOH HOH . D 4 HOH A 33 533 96 HOH HOH . D 4 HOH A 34 534 23 HOH HOH . D 4 HOH A 35 535 49 HOH HOH . D 4 HOH A 36 536 62 HOH HOH . D 4 HOH A 37 537 12 HOH HOH . D 4 HOH A 38 538 72 HOH HOH . D 4 HOH A 39 539 94 HOH HOH . D 4 HOH A 40 540 129 HOH HOH . D 4 HOH A 41 541 55 HOH HOH . D 4 HOH A 42 542 131 HOH HOH . D 4 HOH A 43 543 73 HOH HOH . D 4 HOH A 44 544 14 HOH HOH . D 4 HOH A 45 545 15 HOH HOH . D 4 HOH A 46 546 102 HOH HOH . D 4 HOH A 47 547 6 HOH HOH . D 4 HOH A 48 548 93 HOH HOH . D 4 HOH A 49 549 70 HOH HOH . D 4 HOH A 50 550 17 HOH HOH . D 4 HOH A 51 551 51 HOH HOH . D 4 HOH A 52 552 80 HOH HOH . D 4 HOH A 53 553 22 HOH HOH . D 4 HOH A 54 554 21 HOH HOH . D 4 HOH A 55 555 118 HOH HOH . D 4 HOH A 56 556 75 HOH HOH . D 4 HOH A 57 557 115 HOH HOH . D 4 HOH A 58 558 97 HOH HOH . D 4 HOH A 59 559 1 HOH HOH . D 4 HOH A 60 560 106 HOH HOH . D 4 HOH A 61 561 83 HOH HOH . D 4 HOH A 62 562 27 HOH HOH . D 4 HOH A 63 563 121 HOH HOH . D 4 HOH A 64 564 105 HOH HOH . D 4 HOH A 65 565 25 HOH HOH . D 4 HOH A 66 566 89 HOH HOH . D 4 HOH A 67 567 60 HOH HOH . D 4 HOH A 68 568 68 HOH HOH . D 4 HOH A 69 569 10 HOH HOH . D 4 HOH A 70 570 38 HOH HOH . D 4 HOH A 71 571 19 HOH HOH . D 4 HOH A 72 572 28 HOH HOH . D 4 HOH A 73 573 35 HOH HOH . D 4 HOH A 74 574 29 HOH HOH . D 4 HOH A 75 575 132 HOH HOH . D 4 HOH A 76 576 26 HOH HOH . D 4 HOH A 77 577 108 HOH HOH . D 4 HOH A 78 578 104 HOH HOH . D 4 HOH A 79 579 82 HOH HOH . D 4 HOH A 80 580 126 HOH HOH . D 4 HOH A 81 581 134 HOH HOH . D 4 HOH A 82 582 39 HOH HOH . D 4 HOH A 83 583 11 HOH HOH . D 4 HOH A 84 584 57 HOH HOH . D 4 HOH A 85 585 112 HOH HOH . D 4 HOH A 86 586 85 HOH HOH . D 4 HOH A 87 587 81 HOH HOH . D 4 HOH A 88 588 5 HOH HOH . D 4 HOH A 89 589 52 HOH HOH . D 4 HOH A 90 590 101 HOH HOH . D 4 HOH A 91 591 53 HOH HOH . D 4 HOH A 92 592 77 HOH HOH . D 4 HOH A 93 593 127 HOH HOH . D 4 HOH A 94 594 2 HOH HOH . D 4 HOH A 95 595 111 HOH HOH . D 4 HOH A 96 596 31 HOH HOH . D 4 HOH A 97 597 74 HOH HOH . D 4 HOH A 98 598 3 HOH HOH . D 4 HOH A 99 599 4 HOH HOH . D 4 HOH A 100 600 42 HOH HOH . D 4 HOH A 101 601 86 HOH HOH . D 4 HOH A 102 602 48 HOH HOH . D 4 HOH A 103 603 133 HOH HOH . D 4 HOH A 104 604 99 HOH HOH . D 4 HOH A 105 605 69 HOH HOH . D 4 HOH A 106 606 20 HOH HOH . D 4 HOH A 107 607 122 HOH HOH . D 4 HOH A 108 608 84 HOH HOH . D 4 HOH A 109 609 18 HOH HOH . D 4 HOH A 110 610 58 HOH HOH . D 4 HOH A 111 611 32 HOH HOH . D 4 HOH A 112 612 65 HOH HOH . D 4 HOH A 113 613 128 HOH HOH . D 4 HOH A 114 614 76 HOH HOH . D 4 HOH A 115 615 36 HOH HOH . D 4 HOH A 116 616 117 HOH HOH . D 4 HOH A 117 617 56 HOH HOH . D 4 HOH A 118 618 63 HOH HOH . D 4 HOH A 119 619 120 HOH HOH . D 4 HOH A 120 620 91 HOH HOH . D 4 HOH A 121 621 45 HOH HOH . D 4 HOH A 122 622 98 HOH HOH . D 4 HOH A 123 623 71 HOH HOH . D 4 HOH A 124 624 125 HOH HOH . D 4 HOH A 125 625 59 HOH HOH . D 4 HOH A 126 626 113 HOH HOH . D 4 HOH A 127 627 37 HOH HOH . D 4 HOH A 128 628 119 HOH HOH . D 4 HOH A 129 629 61 HOH HOH . D 4 HOH A 130 630 92 HOH HOH . D 4 HOH A 131 631 114 HOH HOH . D 4 HOH A 132 632 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 T9A . . . C 3 23.371 41.527 2.314 1 31.04 ? C4 T9A 402 A 1 HETATM 2 C C5 T9A . . . C 3 24.15 41.868 3.416 1 30.88 ? C5 T9A 402 A 1 HETATM 3 C C6 T9A . . . C 3 25.565 41.384 3.538 1 33.53 ? C6 T9A 402 A 1 HETATM 4 N N1 T9A . . . C 3 22.179 43.919 -0.106 1 31.41 ? N1 T9A 402 A 1 HETATM 5 C C7 T9A . . . C 3 23.576 42.64 4.412 1 29 ? C7 T9A 402 A 1 HETATM 6 C C8 T9A . . . C 3 22.265 43.081 4.333 1 29.59 ? C8 T9A 402 A 1 HETATM 7 C C9 T9A . . . C 3 21.714 44.036 5.357 1 32.67 ? C9 T9A 402 A 1 HETATM 8 C C10 T9A . . . C 3 21.503 42.695 3.234 1 27.49 ? C10 T9A 402 A 1 HETATM 9 C C11 T9A . . . C 3 22.013 41.478 -0.219 1 28.79 ? C11 T9A 402 A 1 HETATM 10 C C12 T9A . . . C 3 22.26 40.308 -0.927 1 30.66 ? C12 T9A 402 A 1 HETATM 11 C C13 T9A . . . C 3 22.952 40.304 -2.125 1 30.19 ? C13 T9A 402 A 1 HETATM 12 C C14 T9A . . . C 3 23.139 39.024 -2.901 1 32.42 ? C14 T9A 402 A 1 HETATM 13 C C15 T9A . . . C 3 23.42 41.519 -2.611 1 31.66 ? C15 T9A 402 A 1 HETATM 14 O O1 T9A . . . C 3 17.694 41.688 0.588 1 34.12 ? O1 T9A 402 A 1 HETATM 15 C C18 T9A . . . C 3 18.738 41.338 1.124 1 30.17 ? C18 T9A 402 A 1 HETATM 16 C C19 T9A . . . C 3 18.75 40.108 1.945 1 30.42 ? C19 T9A 402 A 1 HETATM 17 S S T9A . . . C 3 17.441 39.014 1.66 1 35.48 ? S T9A 402 A 1 HETATM 18 C C22 T9A . . . C 3 17.827 38.13 3.098 1 38.04 ? C22 T9A 402 A 1 HETATM 19 BR BR T9A . . . C 3 16.746 36.679 3.613 1 61.87 ? BR T9A 402 A 1 HETATM 20 C C21 T9A . . . C 3 18.895 38.622 3.768 1 32.21 ? C21 T9A 402 A 1 HETATM 21 C C20 T9A . . . C 3 19.439 39.756 3.126 1 32.08 ? C20 T9A 402 A 1 HETATM 22 N N T9A . . . C 3 19.863 42.038 0.959 1 27.91 ? N T9A 402 A 1 HETATM 23 C C1 T9A . . . C 3 19.794 43.364 0.324 1 31.31 ? C1 T9A 402 A 1 HETATM 24 C C2 T9A . . . C 3 21.188 41.414 1.052 1 29.01 ? C2 T9A 402 A 1 HETATM 25 C C17 T9A . . . C 3 22.467 42.692 -0.747 1 29.51 ? C17 T9A 402 A 1 HETATM 26 C C16 T9A . . . C 3 23.173 42.708 -1.941 1 27.92 ? C16 T9A 402 A 1 HETATM 27 C C T9A . . . C 3 21.023 44.246 0.511 1 28.73 ? C T9A 402 A 1 HETATM 28 O O T9A . . . C 3 20.93 45.27 1.187 1 32.51 ? O T9A 402 A 1 HETATM 29 C C3 T9A . . . C 3 22.041 41.916 2.213 1 28.04 ? C3 T9A 402 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 29 #