data_6W6N # _model_server_result.job_id sCfUuKuLZccvz5iaiVMNgQ _model_server_result.datetime_utc '2024-10-19 21:40:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w6n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6W6N # _exptl.entry_id 6W6N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6W6N _cell.length_a 47.373 _cell.length_b 80.172 _cell.length_c 110.767 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W6N _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 134 A CYS 168 1_555 C CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? covale ? covale2 B SG CYS 134 B CYS 168 1_555 D CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.723 ? metalc ? metalc1 A NE2 HIS 138 A HIS 172 1_555 C FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc2 C FE HEC . A HEC 201 1_555 E O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc3 B NE2 HIS 138 B HIS 172 1_555 D FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc4 D FE HEC . B HEC 201 1_555 F O HOH . B HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 6W6N _atom_sites.fract_transf_matrix[1][1] 0.021109 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012473 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009028 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEC A 1 201 201 HEC HEC . D 2 HEC B 1 201 201 HEC HEC . E 3 HOH A 1 301 35 HOH HOH . E 3 HOH A 2 302 34 HOH HOH . E 3 HOH A 3 303 24 HOH HOH . E 3 HOH A 4 304 4 HOH HOH . E 3 HOH A 5 305 15 HOH HOH . E 3 HOH A 6 306 12 HOH HOH . E 3 HOH A 7 307 11 HOH HOH . E 3 HOH A 8 308 27 HOH HOH . E 3 HOH A 9 309 2 HOH HOH . E 3 HOH A 10 310 41 HOH HOH . E 3 HOH A 11 311 28 HOH HOH . E 3 HOH A 12 312 3 HOH HOH . E 3 HOH A 13 313 13 HOH HOH . E 3 HOH A 14 314 9 HOH HOH . E 3 HOH A 15 315 5 HOH HOH . E 3 HOH A 16 316 19 HOH HOH . E 3 HOH A 17 317 21 HOH HOH . E 3 HOH A 18 318 10 HOH HOH . E 3 HOH A 19 319 8 HOH HOH . E 3 HOH A 20 320 37 HOH HOH . E 3 HOH A 21 321 25 HOH HOH . E 3 HOH A 22 322 32 HOH HOH . E 3 HOH A 23 323 40 HOH HOH . E 3 HOH A 24 324 23 HOH HOH . E 3 HOH A 25 325 36 HOH HOH . F 3 HOH B 1 301 30 HOH HOH . F 3 HOH B 2 302 17 HOH HOH . F 3 HOH B 3 303 20 HOH HOH . F 3 HOH B 4 304 6 HOH HOH . F 3 HOH B 5 305 38 HOH HOH . F 3 HOH B 6 306 7 HOH HOH . F 3 HOH B 7 307 31 HOH HOH . F 3 HOH B 8 308 26 HOH HOH . F 3 HOH B 9 309 1 HOH HOH . F 3 HOH B 10 310 42 HOH HOH . F 3 HOH B 11 311 39 HOH HOH . F 3 HOH B 12 312 16 HOH HOH . F 3 HOH B 13 313 33 HOH HOH . F 3 HOH B 14 314 18 HOH HOH . F 3 HOH B 15 315 43 HOH HOH . F 3 HOH B 16 316 29 HOH HOH . F 3 HOH B 17 317 14 HOH HOH . F 3 HOH B 18 318 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . C 2 13.593 -19.389 -5.864 1 48.15 ? FE HEC 201 A 1 HETATM 2 C CHA HEC . . . C 2 15.857 -18.106 -8.105 1 47.66 ? CHA HEC 201 A 1 HETATM 3 C CHB HEC . . . C 2 11.128 -17.406 -7.252 1 48.22 ? CHB HEC 201 A 1 HETATM 4 C CHC HEC . . . C 2 11.169 -20.957 -3.958 1 50.45 ? CHC HEC 201 A 1 HETATM 5 C CHD HEC . . . C 2 15.985 -21.359 -4.445 1 52.95 ? CHD HEC 201 A 1 HETATM 6 N NA HEC . . . C 2 13.482 -18.087 -7.471 1 52.2 ? NA HEC 201 A 1 HETATM 7 C C1A HEC . . . C 2 14.594 -17.556 -8.098 1 53.63 ? C1A HEC 201 A 1 HETATM 8 C C2A HEC . . . C 2 14.196 -16.321 -8.744 1 46.62 ? C2A HEC 201 A 1 HETATM 9 C C3A HEC . . . C 2 12.896 -16.132 -8.51 1 52.01 ? C3A HEC 201 A 1 HETATM 10 C C4A HEC . . . C 2 12.418 -17.236 -7.705 1 50.5 ? C4A HEC 201 A 1 HETATM 11 C CMA HEC . . . C 2 12.042 -14.946 -9.009 1 47.96 ? CMA HEC 201 A 1 HETATM 12 C CAA HEC . . . C 2 15.113 -15.387 -9.563 1 47.73 ? CAA HEC 201 A 1 HETATM 13 C CBA HEC . . . C 2 15.58 -14.229 -8.683 1 51.98 ? CBA HEC 201 A 1 HETATM 14 C CGA HEC . . . C 2 16.469 -14.729 -7.573 1 50.98 ? CGA HEC 201 A 1 HETATM 15 O O1A HEC . . . C 2 16.182 -14.421 -6.388 1 50.55 ? O1A HEC 201 A 1 HETATM 16 O O2A HEC . . . C 2 17.463 -15.439 -7.871 1 50.25 ? O2A HEC 201 A 1 HETATM 17 N NB HEC . . . C 2 11.531 -19.18 -5.605 1 53.6 ? NB HEC 201 A 1 HETATM 18 C C1B HEC . . . C 2 10.708 -18.369 -6.363 1 47.69 ? C1B HEC 201 A 1 HETATM 19 C C2B HEC . . . C 2 9.332 -18.709 -6.066 1 50.84 ? C2B HEC 201 A 1 HETATM 20 C C3B HEC . . . C 2 9.337 -19.691 -5.153 1 50.36 ? C3B HEC 201 A 1 HETATM 21 C C4B HEC . . . C 2 10.722 -20.006 -4.848 1 53.73 ? C4B HEC 201 A 1 HETATM 22 C CMB HEC . . . C 2 8.103 -18.02 -6.704 1 44.1 ? CMB HEC 201 A 1 HETATM 23 C CAB HEC . . . C 2 8.109 -20.387 -4.516 1 46.52 ? CAB HEC 201 A 1 HETATM 24 C CBB HEC . . . C 2 7.285 -21.176 -5.559 1 42.55 ? CBB HEC 201 A 1 HETATM 25 N NC HEC . . . C 2 13.572 -20.893 -4.487 1 56.76 ? NC HEC 201 A 1 HETATM 26 C C1C HEC . . . C 2 12.48 -21.347 -3.775 1 50.82 ? C1C HEC 201 A 1 HETATM 27 C C2C HEC . . . C 2 12.958 -22.231 -2.732 1 55.1 ? C2C HEC 201 A 1 HETATM 28 C C3C HEC . . . C 2 14.272 -22.438 -2.94 1 54.24 ? C3C HEC 201 A 1 HETATM 29 C C4C HEC . . . C 2 14.692 -21.536 -3.998 1 54.6 ? C4C HEC 201 A 1 HETATM 30 C CMC HEC . . . C 2 11.998 -23.034 -1.823 1 50.6 ? CMC HEC 201 A 1 HETATM 31 C CAC HEC . . . C 2 15.263 -23.32 -2.131 1 51.31 ? CAC HEC 201 A 1 HETATM 32 C CBC HEC . . . C 2 14.851 -24.802 -1.978 1 41.46 ? CBC HEC 201 A 1 HETATM 33 N ND HEC . . . C 2 15.614 -19.688 -6.23 1 54.76 ? ND HEC 201 A 1 HETATM 34 C C1D HEC . . . C 2 16.406 -20.559 -5.489 1 53.56 ? C1D HEC 201 A 1 HETATM 35 C C2D HEC . . . C 2 17.762 -20.495 -5.992 1 51.09 ? C2D HEC 201 A 1 HETATM 36 C C3D HEC . . . C 2 17.727 -19.474 -7.142 1 55.02 ? C3D HEC 201 A 1 HETATM 37 C C4D HEC . . . C 2 16.351 -19.031 -7.211 1 53.35 ? C4D HEC 201 A 1 HETATM 38 C CMD HEC . . . C 2 18.976 -21.291 -5.463 1 50.25 ? CMD HEC 201 A 1 HETATM 39 C CAD HEC . . . C 2 18.898 -19.006 -8.041 1 47.58 ? CAD HEC 201 A 1 HETATM 40 C CBD HEC . . . C 2 19.572 -20.186 -8.735 1 52.47 ? CBD HEC 201 A 1 HETATM 41 C CGD HEC . . . C 2 18.583 -20.881 -9.628 1 53.38 ? CGD HEC 201 A 1 HETATM 42 O O1D HEC . . . C 2 18.174 -22.024 -9.3 1 51.51 ? O1D HEC 201 A 1 HETATM 43 O O2D HEC . . . C 2 18.196 -20.291 -10.67 1 54.78 ? O2D HEC 201 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #