data_6W78
#
_model_server_result.job_id            87FQtJOQi3aCvIJaLvqpcg 
_model_server_result.datetime_utc      '2024-10-19 17:42:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6w78 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    6W78 
#
_exptl.entry_id    6W78 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6W78 
_cell.length_a            38.895 
_cell.length_b            57.453 
_cell.length_c            135.538 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6W78 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 29 A CYS 29 1_555 A SG CYS 59 A CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
disulf ? disulf2 A SG CYS 60 A CYS 60 1_555 A SG CYS 67 A CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
disulf ? disulf3 A SG CYS 301 A CYS 301 1_555 A SG CYS 323 A CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf4 A SG CYS 325 A CYS 325 1_555 A SG CYS 332 A CYS 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
covale ? covale1 A ND2 ASN 256 A ASN 256 1_555 C C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? 
covale ? covale2 A ND2 ASN 294 A ASN 294 1_555 B C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6W78 
_atom_sites.fract_transf_matrix[1][1]    0.02571 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017406 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007378 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 401 337 NAG NAG . 
C 2 NAG A 1 402 338 NAG NAG . 
D 3 HOH A 1 501 412 HOH HOH . 
D 3 HOH A 2 502 435 HOH HOH . 
D 3 HOH A 3 503 382 HOH HOH . 
D 3 HOH A 4 504 402 HOH HOH . 
D 3 HOH A 5 505 351 HOH HOH . 
D 3 HOH A 6 506 368 HOH HOH . 
D 3 HOH A 7 507 383 HOH HOH . 
D 3 HOH A 8 508 385 HOH HOH . 
D 3 HOH A 9 509 398 HOH HOH . 
D 3 HOH A 10 510 346 HOH HOH . 
D 3 HOH A 11 511 373 HOH HOH . 
D 3 HOH A 12 512 343 HOH HOH . 
D 3 HOH A 13 513 432 HOH HOH . 
D 3 HOH A 14 514 345 HOH HOH . 
D 3 HOH A 15 515 381 HOH HOH . 
D 3 HOH A 16 516 356 HOH HOH . 
D 3 HOH A 17 517 364 HOH HOH . 
D 3 HOH A 18 518 404 HOH HOH . 
D 3 HOH A 19 519 444 HOH HOH . 
D 3 HOH A 20 520 371 HOH HOH . 
D 3 HOH A 21 521 423 HOH HOH . 
D 3 HOH A 22 522 347 HOH HOH . 
D 3 HOH A 23 523 488 HOH HOH . 
D 3 HOH A 24 524 493 HOH HOH . 
D 3 HOH A 25 525 378 HOH HOH . 
D 3 HOH A 26 526 480 HOH HOH . 
D 3 HOH A 27 527 353 HOH HOH . 
D 3 HOH A 28 528 344 HOH HOH . 
D 3 HOH A 29 529 421 HOH HOH . 
D 3 HOH A 30 530 494 HOH HOH . 
D 3 HOH A 31 531 360 HOH HOH . 
D 3 HOH A 32 532 342 HOH HOH . 
D 3 HOH A 33 533 354 HOH HOH . 
D 3 HOH A 34 534 453 HOH HOH . 
D 3 HOH A 35 535 492 HOH HOH . 
D 3 HOH A 36 536 341 HOH HOH . 
D 3 HOH A 37 537 415 HOH HOH . 
D 3 HOH A 38 538 384 HOH HOH . 
D 3 HOH A 39 539 339 HOH HOH . 
D 3 HOH A 40 540 479 HOH HOH . 
D 3 HOH A 41 541 374 HOH HOH . 
D 3 HOH A 42 542 472 HOH HOH . 
D 3 HOH A 43 543 418 HOH HOH . 
D 3 HOH A 44 544 478 HOH HOH . 
D 3 HOH A 45 545 362 HOH HOH . 
D 3 HOH A 46 546 392 HOH HOH . 
D 3 HOH A 47 547 357 HOH HOH . 
D 3 HOH A 48 548 369 HOH HOH . 
D 3 HOH A 49 549 366 HOH HOH . 
D 3 HOH A 50 550 486 HOH HOH . 
D 3 HOH A 51 551 391 HOH HOH . 
D 3 HOH A 52 552 367 HOH HOH . 
D 3 HOH A 53 553 490 HOH HOH . 
D 3 HOH A 54 554 365 HOH HOH . 
D 3 HOH A 55 555 355 HOH HOH . 
D 3 HOH A 56 556 467 HOH HOH . 
D 3 HOH A 57 557 372 HOH HOH . 
D 3 HOH A 58 558 434 HOH HOH . 
D 3 HOH A 59 559 359 HOH HOH . 
D 3 HOH A 60 560 349 HOH HOH . 
D 3 HOH A 61 561 475 HOH HOH . 
D 3 HOH A 62 562 348 HOH HOH . 
D 3 HOH A 63 563 350 HOH HOH . 
D 3 HOH A 64 564 340 HOH HOH . 
D 3 HOH A 65 565 465 HOH HOH . 
D 3 HOH A 66 566 411 HOH HOH . 
D 3 HOH A 67 567 489 HOH HOH . 
D 3 HOH A 68 568 495 HOH HOH . 
D 3 HOH A 69 569 470 HOH HOH . 
D 3 HOH A 70 570 471 HOH HOH . 
D 3 HOH A 71 571 414 HOH HOH . 
D 3 HOH A 72 572 370 HOH HOH . 
D 3 HOH A 73 573 358 HOH HOH . 
D 3 HOH A 74 574 401 HOH HOH . 
D 3 HOH A 75 575 361 HOH HOH . 
D 3 HOH A 76 576 469 HOH HOH . 
D 3 HOH A 77 577 377 HOH HOH . 
D 3 HOH A 78 578 477 HOH HOH . 
D 3 HOH A 79 579 482 HOH HOH . 
D 3 HOH A 80 580 375 HOH HOH . 
D 3 HOH A 81 581 430 HOH HOH . 
D 3 HOH A 82 582 363 HOH HOH . 
D 3 HOH A 83 583 413 HOH HOH . 
D 3 HOH A 84 584 474 HOH HOH . 
D 3 HOH A 85 585 491 HOH HOH . 
D 3 HOH A 86 586 466 HOH HOH . 
D 3 HOH A 87 587 386 HOH HOH . 
D 3 HOH A 88 588 394 HOH HOH . 
D 3 HOH A 89 589 409 HOH HOH . 
D 3 HOH A 90 590 476 HOH HOH . 
D 3 HOH A 91 591 426 HOH HOH . 
D 3 HOH A 92 592 417 HOH HOH . 
D 3 HOH A 93 593 462 HOH HOH . 
D 3 HOH A 94 594 455 HOH HOH . 
D 3 HOH A 95 595 389 HOH HOH . 
D 3 HOH A 96 596 422 HOH HOH . 
D 3 HOH A 97 597 395 HOH HOH . 
D 3 HOH A 98 598 388 HOH HOH . 
D 3 HOH A 99 599 473 HOH HOH . 
D 3 HOH A 100 600 464 HOH HOH . 
D 3 HOH A 101 601 408 HOH HOH . 
D 3 HOH A 102 602 484 HOH HOH . 
D 3 HOH A 103 603 483 HOH HOH . 
D 3 HOH A 104 604 463 HOH HOH . 
D 3 HOH A 105 605 485 HOH HOH . 
D 3 HOH A 106 606 429 HOH HOH . 
D 3 HOH A 107 607 379 HOH HOH . 
D 3 HOH A 108 608 438 HOH HOH . 
D 3 HOH A 109 609 406 HOH HOH . 
D 3 HOH A 110 610 399 HOH HOH . 
D 3 HOH A 111 611 487 HOH HOH . 
D 3 HOH A 112 612 481 HOH HOH . 
D 3 HOH A 113 613 456 HOH HOH . 
D 3 HOH A 114 614 419 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . B 2 -28.276 -12.787 33.378 1 31.66 ? C1 NAG 401 A 1 
HETATM 2 C C2 NAG . . . B 2 -28.651 -11.32 33.399 1 33.63 ? C2 NAG 401 A 1 
HETATM 3 C C3 NAG . . . B 2 -30.082 -11.077 32.946 1 35.46 ? C3 NAG 401 A 1 
HETATM 4 C C4 NAG . . . B 2 -30.342 -11.593 31.551 1 35.95 ? C4 NAG 401 A 1 
HETATM 5 C C5 NAG . . . B 2 -29.968 -13.065 31.652 1 34.75 ? C5 NAG 401 A 1 
HETATM 6 C C6 NAG . . . B 2 -30.027 -13.775 30.318 1 35.16 ? C6 NAG 401 A 1 
HETATM 7 C C7 NAG . . . B 2 -27.424 -10.379 35.241 1 35.09 ? C7 NAG 401 A 1 
HETATM 8 C C8 NAG . . . B 2 -27.481 -9.804 36.603 1 38.05 ? C8 NAG 401 A 1 
HETATM 9 N N2 NAG . . . B 2 -28.533 -10.862 34.764 1 34.54 ? N2 NAG 401 A 1 
HETATM 10 O O3 NAG . . . B 2 -30.165 -9.68 33.089 1 37.6 ? O3 NAG 401 A 1 
HETATM 11 O O4 NAG . . . B 2 -31.706 -11.329 31.089 1 40.64 ? O4 NAG 401 A 1 
HETATM 12 O O5 NAG . . . B 2 -28.611 -13.317 32.115 1 31.69 ? O5 NAG 401 A 1 
HETATM 13 O O6 NAG . . . B 2 -29.058 -13.192 29.394 1 36.12 ? O6 NAG 401 A 1 
HETATM 14 O O7 NAG . . . B 2 -26.377 -10.345 34.657 1 35.42 ? O7 NAG 401 A 1 
HETATM 15 H H1 NAG . . . B 2 -28.878 -13.291 34.146 1 32.34 ? H1 NAG 401 A 1 
HETATM 16 H H2 NAG . . . B 2 -27.969 -10.758 32.746 1 33.26 ? H2 NAG 401 A 1 
HETATM 17 H H3 NAG . . . B 2 -30.771 -11.572 33.644 1 36.21 ? H3 NAG 401 A 1 
HETATM 18 H H4 NAG . . . B 2 -29.631 -11.102 30.872 1 35.86 ? H4 NAG 401 A 1 
HETATM 19 H H5 NAG . . . B 2 -30.68 -13.554 32.332 1 35.13 ? H5 NAG 401 A 1 
HETATM 20 H H61 NAG . . . B 2 -31.032 -13.687 29.899 1 36.37 ? H61 NAG 401 A 1 
HETATM 21 H H62 NAG . . . B 2 -29.81 -14.836 30.457 1 34.84 ? H62 NAG 401 A 1 
HETATM 22 H H81 NAG . . . B 2 -27.937 -10.499 37.258 1 37.49 ? H81 NAG 401 A 1 
HETATM 23 H H82 NAG . . . B 2 -26.503 -9.587 36.944 1 37.05 ? H82 NAG 401 A 1 
HETATM 24 H H83 NAG . . . B 2 -28.054 -8.913 36.585 1 38.42 ? H83 NAG 401 A 1 
HETATM 25 H HN2 NAG . . . B 2 -29.363 -10.862 35.339 1 35.54 ? HN2 NAG 401 A 1 
HETATM 26 H HO3 NAG . . . B 2 -31.053 -9.391 32.865 0 30 ? HO3 NAG 401 A 1 
HETATM 27 H HO4 NAG . . . B 2 -31.828 -11.695 30.207 0 30 ? HO4 NAG 401 A 1 
HETATM 28 H HO6 NAG . . . B 2 -29.109 -13.654 28.546 0 30 ? HO6 NAG 401 A 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           28 
#