data_6W7B # _model_server_result.job_id PXH-xM8_FFj-chTXFr0A5w _model_server_result.datetime_utc '2024-11-23 00:42:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w7b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 6W7B # _exptl.entry_id 6W7B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 114.229 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-OCTANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6W7B _cell.length_a 66.906 _cell.length_b 122.597 _cell.length_c 125.576 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W7B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 74 A CYS 93 1_555 B SG CYS 74 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A O THR 123 A THR 142 1_555 H K K . A K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.049 ? metalc ? metalc2 A O THR 123 A THR 142 1_555 M K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.97 ? metalc ? metalc3 A OG1 THR 123 A THR 142 1_555 M K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.446 ? metalc ? metalc4 A O ILE 124 A ILE 143 1_555 H K K . A K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.014 ? metalc ? metalc5 A O THR 232 A THR 251 1_555 H K K . A K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc6 A O THR 232 A THR 251 1_555 M K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc7 A OG1 THR 232 A THR 251 1_555 M K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.317 ? metalc ? metalc8 A O ILE 233 A ILE 252 1_555 H K K . A K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.252 ? metalc ? metalc9 A NE2 HIS 294 A HIS 313 1_555 C CD CD . A CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc10 C CD CD . A CD 401 2_554 B NE2 HIS 294 B HIS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc11 H K K . A K 406 1_555 B O THR 123 B THR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc12 H K K . A K 406 1_555 B O ILE 124 B ILE 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc13 H K K . A K 406 1_555 B O THR 232 B THR 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc14 H K K . A K 406 1_555 B O ILE 233 B ILE 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.275 ? metalc ? metalc15 B O THR 123 B THR 142 1_555 M K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc16 B OG1 THR 123 B THR 142 1_555 M K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.23 ? metalc ? metalc17 B O THR 232 B THR 251 1_555 M K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc18 B OG1 THR 232 B THR 251 1_555 M K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? # _chem_comp.formula 'C8 H18' _chem_comp.formula_weight 114.229 _chem_comp.id OCT _chem_comp.mon_nstd_flag . _chem_comp.name N-OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OCT sing 348 n n C1 H11 OCT sing 349 n n C1 H12 OCT sing 350 n n C1 H13 OCT sing 351 n n C2 C3 OCT sing 352 n n C2 H21 OCT sing 353 n n C2 H22 OCT sing 354 n n C3 C4 OCT sing 355 n n C3 H31 OCT sing 356 n n C3 H32 OCT sing 357 n n C4 C5 OCT sing 358 n n C4 H41 OCT sing 359 n n C4 H42 OCT sing 360 n n C5 C6 OCT sing 361 n n C5 H51 OCT sing 362 n n C5 H52 OCT sing 363 n n C6 C7 OCT sing 364 n n C6 H61 OCT sing 365 n n C6 H62 OCT sing 366 n n C7 C8 OCT sing 367 n n C7 H71 OCT sing 368 n n C7 H72 OCT sing 369 n n C8 H81 OCT sing 370 n n C8 H82 OCT sing 371 n n C8 H83 OCT sing 372 n n # _atom_sites.entry_id 6W7B _atom_sites.fract_transf_matrix[1][1] 0.014946 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008157 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007963 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CD A 1 401 1 CD CD . D 3 D12 A 1 402 2 D12 D12 . E 3 D12 A 1 403 3 D12 D12 . F 4 OCT A 1 404 2 OCT OCT . G 5 B7G A 1 405 1 B7G B7G . H 6 K A 1 406 1 K K . I 2 CD B 1 401 3 CD CD . J 3 D12 B 1 402 1 D12 D12 . K 4 OCT B 1 403 1 OCT OCT . L 7 D10 B 1 404 1 D10 D10 . M 6 K B 1 405 2 K K . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OCT . . . F 4 8.727 -23.813 -47.886 1 180 ? C1 OCT 404 A 1 HETATM 2 C C2 OCT . . . F 4 7.994 -25.109 -47.461 1 194.97 ? C2 OCT 404 A 1 HETATM 3 C C3 OCT . . . F 4 8.879 -26.327 -47.784 1 192.63 ? C3 OCT 404 A 1 HETATM 4 C C4 OCT . . . F 4 8.125 -27.593 -47.331 1 193.86 ? C4 OCT 404 A 1 HETATM 5 C C5 OCT . . . F 4 8.913 -28.852 -47.766 1 198.45 ? C5 OCT 404 A 1 HETATM 6 C C6 OCT . . . F 4 8.023 -30.079 -47.518 1 201.72 ? C6 OCT 404 A 1 HETATM 7 C C7 OCT . . . F 4 8.804 -31.337 -47.889 1 195.5 ? C7 OCT 404 A 1 HETATM 8 C C8 OCT . . . F 4 7.922 -32.581 -47.764 1 186.36 ? C8 OCT 404 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #