data_6W7B # _model_server_result.job_id wN_a5xX4dQeVpJMVElIZmw _model_server_result.datetime_utc '2024-11-23 00:15:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w7b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":405}' # _entry.id 6W7B # _exptl.entry_id 6W7B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 278.342 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'heptyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6W7B _cell.length_a 66.906 _cell.length_b 122.597 _cell.length_c 125.576 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W7B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 74 A CYS 93 1_555 B SG CYS 74 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A O THR 123 A THR 142 1_555 H K K . A K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.049 ? metalc ? metalc2 A O THR 123 A THR 142 1_555 M K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.97 ? metalc ? metalc3 A OG1 THR 123 A THR 142 1_555 M K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.446 ? metalc ? metalc4 A O ILE 124 A ILE 143 1_555 H K K . A K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.014 ? metalc ? metalc5 A O THR 232 A THR 251 1_555 H K K . A K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc6 A O THR 232 A THR 251 1_555 M K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc7 A OG1 THR 232 A THR 251 1_555 M K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.317 ? metalc ? metalc8 A O ILE 233 A ILE 252 1_555 H K K . A K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.252 ? metalc ? metalc9 A NE2 HIS 294 A HIS 313 1_555 C CD CD . A CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc10 C CD CD . A CD 401 2_554 B NE2 HIS 294 B HIS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc11 H K K . A K 406 1_555 B O THR 123 B THR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc12 H K K . A K 406 1_555 B O ILE 124 B ILE 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc13 H K K . A K 406 1_555 B O THR 232 B THR 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc14 H K K . A K 406 1_555 B O ILE 233 B ILE 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.275 ? metalc ? metalc15 B O THR 123 B THR 142 1_555 M K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc16 B OG1 THR 123 B THR 142 1_555 M K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.23 ? metalc ? metalc17 B O THR 232 B THR 251 1_555 M K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc18 B OG1 THR 232 B THR 251 1_555 M K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? # _chem_comp.formula 'C13 H26 O6' _chem_comp.formula_weight 278.342 _chem_comp.id B7G _chem_comp.mon_nstd_flag n _chem_comp.name 'heptyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'HEPTYL-BETA-D-GLUCOPYRANOSIDE;heptyl beta-D-glucoside;heptyl D-glucoside;heptyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 O5 B7G sing 70 n n C5 C4 B7G sing 71 n n C5 C6 B7G sing 72 n n C5 H5 B7G sing 73 n n O5 C1 B7G sing 74 n n C1 C2 B7G sing 75 n n C1 O1 B7G sing 76 n n C1 H1 B7G sing 77 n n C2 C3 B7G sing 78 n n C2 O2 B7G sing 79 n n C2 H2 B7G sing 80 n n C3 C4 B7G sing 81 n n C3 O3 B7G sing 82 n n C3 H3 B7G sing 83 n n C4 O4 B7G sing 84 n n C4 H4 B7G sing 85 n n C6 O6 B7G sing 86 n n C6 H61 B7G sing 87 n n C6 H62 B7G sing 88 n n O1 C7 B7G sing 89 n n C7 C8 B7G sing 90 n n C7 H71 B7G sing 91 n n C7 H72 B7G sing 92 n n C8 C9 B7G sing 93 n n C8 H81 B7G sing 94 n n C8 H82 B7G sing 95 n n C9 C10 B7G sing 96 n n C9 H91 B7G sing 97 n n C9 H92 B7G sing 98 n n C10 C11 B7G sing 99 n n C10 H101 B7G sing 100 n n C10 H102 B7G sing 101 n n C11 C12 B7G sing 102 n n C11 H111 B7G sing 103 n n C11 H112 B7G sing 104 n n C12 C13 B7G sing 105 n n C12 H121 B7G sing 106 n n C12 H122 B7G sing 107 n n O2 HO2 B7G sing 108 n n O3 HO3 B7G sing 109 n n O4 HO4 B7G sing 110 n n O6 HO6 B7G sing 111 n n C13 H131 B7G sing 112 n n C13 H132 B7G sing 113 n n C13 H133 B7G sing 114 n n # _pdbx_chem_comp_identifier.comp_id B7G _pdbx_chem_comp_identifier.identifier heptyl-b-D-Glucopyranoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 6W7B _atom_sites.fract_transf_matrix[1][1] 0.014946 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008157 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007963 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CD A 1 401 1 CD CD . D 3 D12 A 1 402 2 D12 D12 . E 3 D12 A 1 403 3 D12 D12 . F 4 OCT A 1 404 2 OCT OCT . G 5 B7G A 1 405 1 B7G B7G . H 6 K A 1 406 1 K K . I 2 CD B 1 401 3 CD CD . J 3 D12 B 1 402 1 D12 D12 . K 4 OCT B 1 403 1 OCT OCT . L 7 D10 B 1 404 1 D10 D10 . M 6 K B 1 405 2 K K . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 B7G . . . G 5 -25.52 -22.172 -17.849 1 206.38 ? C5 B7G 405 A 1 HETATM 2 O O5 B7G . . . G 5 -24.753 -20.893 -17.743 1 200.5 ? O5 B7G 405 A 1 HETATM 3 C C1 B7G . . . G 5 -25.525 -19.694 -18.152 1 207.8 ? C1 B7G 405 A 1 HETATM 4 C C2 B7G . . . G 5 -25.989 -19.863 -19.627 1 209.86 ? C2 B7G 405 A 1 HETATM 5 C C3 B7G . . . G 5 -26.889 -21.063 -19.739 1 206.91 ? C3 B7G 405 A 1 HETATM 6 C C4 B7G . . . G 5 -26.309 -22.331 -19.192 1 207.75 ? C4 B7G 405 A 1 HETATM 7 C C6 B7G . . . G 5 -24.582 -23.31 -17.732 1 213.34 ? C6 B7G 405 A 1 HETATM 8 O O1 B7G . . . G 5 -24.776 -18.578 -18.012 1 210.66 ? O1 B7G 405 A 1 HETATM 9 C C7 B7G . . . G 5 -25.131 -17.799 -16.924 1 192.72 ? C7 B7G 405 A 1 HETATM 10 C C8 B7G . . . G 5 -24.398 -16.451 -16.898 1 181.54 ? C8 B7G 405 A 1 HETATM 11 C C9 B7G . . . G 5 -25.374 -15.346 -17.315 1 174.15 ? C9 B7G 405 A 1 HETATM 12 C C10 B7G . . . G 5 -24.558 -14.089 -17.621 1 167.43 ? C10 B7G 405 A 1 HETATM 13 C C11 B7G . . . G 5 -24.585 -13.772 -19.124 1 171.42 ? C11 B7G 405 A 1 HETATM 14 C C12 B7G . . . G 5 -23.704 -12.584 -19.459 1 174.73 ? C12 B7G 405 A 1 HETATM 15 O O2 B7G . . . G 5 -26.695 -18.693 -20.049 1 215.67 ? O2 B7G 405 A 1 HETATM 16 O O3 B7G . . . G 5 -27.292 -21.196 -21.139 1 204.37 ? O3 B7G 405 A 1 HETATM 17 O O4 B7G . . . G 5 -27.373 -23.251 -18.942 1 206.26 ? O4 B7G 405 A 1 HETATM 18 O O6 B7G . . . G 5 -24.708 -23.931 -16.484 1 221.45 ? O6 B7G 405 A 1 HETATM 19 C C13 B7G . . . G 5 -23.837 -12.078 -20.891 1 154.38 ? C13 B7G 405 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 19 #