data_6W7C # _model_server_result.job_id IJiuij0FkyVPpF2Uu3_CuA _model_server_result.datetime_utc '2024-11-05 10:39:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w7c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":407}' # _entry.id 6W7C # _exptl.entry_id 6W7C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 278.342 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'heptyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6W7C _cell.length_a 66.501 _cell.length_b 123.014 _cell.length_c 125.848 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W7C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 74 A CYS 93 1_555 B SG CYS 74 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc1 A O THR 123 A THR 142 1_555 J K K . A K 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.028 ? metalc ? metalc2 A OG1 THR 123 A THR 142 1_555 J K K . A K 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.04 ? metalc ? metalc3 A O THR 123 A THR 142 1_555 L K K . A K 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc4 A O ILE 124 A ILE 143 1_555 L K K . A K 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? metalc ? metalc5 A O THR 232 A THR 251 1_555 J K K . A K 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.792 ? metalc ? metalc6 A OG1 THR 232 A THR 251 1_555 J K K . A K 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.923 ? metalc ? metalc7 A O THR 232 A THR 251 1_555 L K K . A K 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.066 ? metalc ? metalc8 A OE2 GLU 290 A GLU 309 1_555 C CD CD . A CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc9 J K K . A K 408 1_555 B O THR 123 B THR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.25 ? metalc ? metalc10 J K K . A K 408 1_555 B OG1 THR 123 B THR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.175 ? metalc ? metalc11 J K K . A K 408 1_555 B O THR 232 B THR 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? metalc ? metalc12 J K K . A K 408 1_555 B OG1 THR 232 B THR 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc13 L K K . A K 410 1_555 B O THR 123 B THR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc14 L K K . A K 410 1_555 B O ILE 124 B ILE 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc15 L K K . A K 410 1_555 B O THR 232 B THR 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.272 ? metalc ? metalc16 L K K . A K 410 1_555 B O ILE 233 B ILE 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? # _chem_comp.formula 'C13 H26 O6' _chem_comp.formula_weight 278.342 _chem_comp.id B7G _chem_comp.mon_nstd_flag n _chem_comp.name 'heptyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'HEPTYL-BETA-D-GLUCOPYRANOSIDE;heptyl beta-D-glucoside;heptyl D-glucoside;heptyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 O5 B7G sing 70 n n C5 C4 B7G sing 71 n n C5 C6 B7G sing 72 n n C5 H5 B7G sing 73 n n O5 C1 B7G sing 74 n n C1 C2 B7G sing 75 n n C1 O1 B7G sing 76 n n C1 H1 B7G sing 77 n n C2 C3 B7G sing 78 n n C2 O2 B7G sing 79 n n C2 H2 B7G sing 80 n n C3 C4 B7G sing 81 n n C3 O3 B7G sing 82 n n C3 H3 B7G sing 83 n n C4 O4 B7G sing 84 n n C4 H4 B7G sing 85 n n C6 O6 B7G sing 86 n n C6 H61 B7G sing 87 n n C6 H62 B7G sing 88 n n O1 C7 B7G sing 89 n n C7 C8 B7G sing 90 n n C7 H71 B7G sing 91 n n C7 H72 B7G sing 92 n n C8 C9 B7G sing 93 n n C8 H81 B7G sing 94 n n C8 H82 B7G sing 95 n n C9 C10 B7G sing 96 n n C9 H91 B7G sing 97 n n C9 H92 B7G sing 98 n n C10 C11 B7G sing 99 n n C10 H101 B7G sing 100 n n C10 H102 B7G sing 101 n n C11 C12 B7G sing 102 n n C11 H111 B7G sing 103 n n C11 H112 B7G sing 104 n n C12 C13 B7G sing 105 n n C12 H121 B7G sing 106 n n C12 H122 B7G sing 107 n n O2 HO2 B7G sing 108 n n O3 HO3 B7G sing 109 n n O4 HO4 B7G sing 110 n n O6 HO6 B7G sing 111 n n C13 H131 B7G sing 112 n n C13 H132 B7G sing 113 n n C13 H133 B7G sing 114 n n # _pdbx_chem_comp_identifier.comp_id B7G _pdbx_chem_comp_identifier.identifier heptyl-b-D-Glucopyranoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 6W7C _atom_sites.fract_transf_matrix[1][1] 0.015037 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008129 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007946 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CD A 1 401 1 CD CD . D 2 CD A 1 402 2 CD CD . E 3 D12 A 1 403 2 D12 D12 . F 3 D12 A 1 404 3 D12 D12 . G 4 R16 A 1 405 1 R16 R16 . H 5 B7G A 1 406 1 B7G B7G . I 5 B7G A 1 407 2 B7G B7G . J 6 K A 1 408 2 K K . K 6 K A 1 409 3 K K . L 6 K A 1 410 1 K K . M 2 CD B 1 401 3 CD CD . N 3 D12 B 1 402 1 D12 D12 . O 7 OCT B 1 403 1 OCT OCT . P 8 D10 B 1 404 1 D10 D10 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 B7G . . . I 5 -23.565 -10.84 -20.21 1 253.99 ? C5 B7G 407 A 1 HETATM 2 O O5 B7G . . . I 5 -23.092 -11.007 -21.595 1 249.96 ? O5 B7G 407 A 1 HETATM 3 C C1 B7G . . . I 5 -23.728 -12.112 -22.36 1 251.47 ? C1 B7G 407 A 1 HETATM 4 C C2 B7G . . . I 5 -24.478 -13.211 -21.573 1 256.87 ? C2 B7G 407 A 1 HETATM 5 C C3 B7G . . . I 5 -24.62 -13.043 -20.1 1 261.56 ? C3 B7G 407 A 1 HETATM 6 C C4 B7G . . . I 5 -23.58 -12.185 -19.497 1 257.5 ? C4 B7G 407 A 1 HETATM 7 C C6 B7G . . . I 5 -22.647 -9.907 -19.49 1 252.9 ? C6 B7G 407 A 1 HETATM 8 O O1 B7G . . . I 5 -22.748 -12.728 -23.095 1 245.28 ? O1 B7G 407 A 1 HETATM 9 C C7 B7G . . . I 5 -22.539 -12.166 -24.359 1 237.8 ? C7 B7G 407 A 1 HETATM 10 C C8 B7G . . . I 5 -21.237 -11.368 -24.355 1 225.19 ? C8 B7G 407 A 1 HETATM 11 C C9 B7G . . . I 5 -21.505 -9.949 -24.851 1 213.19 ? C9 B7G 407 A 1 HETATM 12 C C10 B7G . . . I 5 -20.173 -9.237 -25.077 1 203.06 ? C10 B7G 407 A 1 HETATM 13 C C11 B7G . . . I 5 -20.327 -7.746 -24.785 1 199.44 ? C11 B7G 407 A 1 HETATM 14 C C12 B7G . . . I 5 -18.942 -7.111 -24.681 1 201.18 ? C12 B7G 407 A 1 HETATM 15 O O2 B7G . . . I 5 -25.795 -13.357 -22.136 1 259 ? O2 B7G 407 A 1 HETATM 16 O O3 B7G . . . I 5 -24.54 -14.366 -19.477 1 266.54 ? O3 B7G 407 A 1 HETATM 17 O O4 B7G . . . I 5 -23.871 -11.989 -18.103 1 260.02 ? O4 B7G 407 A 1 HETATM 18 O O6 B7G . . . I 5 -22.275 -8.867 -20.353 1 255.1 ? O6 B7G 407 A 1 HETATM 19 C C13 B7G . . . I 5 -19.084 -5.607 -24.467 1 204.19 ? C13 B7G 407 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #