data_6W7D
#
_model_server_result.job_id            jm1OHv5y6MkPagtNjGl1ow 
_model_server_result.datetime_utc      '2024-11-13 07:20:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6w7d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":401}' 
#
_entry.id    6W7D 
#
_exptl.entry_id    6W7D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              114.229 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-OCTANE 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6W7D 
_cell.length_a            67.306 
_cell.length_b            122.652 
_cell.length_c            126.127 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6W7D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 L N N 
? 2 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 74 A CYS 93 1_555 B SG CYS 74 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc1 A O THR 123 A THR 142 1_555 I K K . A K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.802 ? 
metalc ? metalc2 A O THR 123 A THR 142 1_555 J K K . A K 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? 
metalc ? metalc3 A OG1 THR 123 A THR 142 1_555 J K K . A K 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.132 ? 
metalc ? metalc4 A O ILE 124 A ILE 143 1_555 I K K . A K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.918 ? 
metalc ? metalc5 A O THR 232 A THR 251 1_555 I K K . A K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? 
metalc ? metalc6 A O THR 232 A THR 251 1_555 J K K . A K 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? 
metalc ? metalc7 A OG1 THR 232 A THR 251 1_555 J K K . A K 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.157 ? 
metalc ? metalc8 A O ILE 233 A ILE 252 1_555 I K K . A K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.064 ? 
metalc ? metalc9 I K K . A K 407 1_555 B O THR 123 B THR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? 
metalc ? metalc10 I K K . A K 407 1_555 B O ILE 124 B ILE 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.985 ? 
metalc ? metalc11 I K K . A K 407 1_555 B O THR 232 B THR 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.452 ? 
metalc ? metalc12 I K K . A K 407 1_555 B O ILE 233 B ILE 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? 
metalc ? metalc13 J K K . A K 408 1_555 B O THR 123 B THR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.299 ? 
metalc ? metalc14 J K K . A K 408 1_555 B OG1 THR 123 B THR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.377 ? 
metalc ? metalc15 J K K . A K 408 1_555 B O THR 232 B THR 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? 
metalc ? metalc16 J K K . A K 408 1_555 B OG1 THR 232 B THR 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.227 ? 
#
_chem_comp.formula           'C8 H18' 
_chem_comp.formula_weight    114.229 
_chem_comp.id                OCT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-OCTANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 OCT sing 325 n n 
C1 H11 OCT sing 326 n n 
C1 H12 OCT sing 327 n n 
C1 H13 OCT sing 328 n n 
C2 C3 OCT sing 329 n n 
C2 H21 OCT sing 330 n n 
C2 H22 OCT sing 331 n n 
C3 C4 OCT sing 332 n n 
C3 H31 OCT sing 333 n n 
C3 H32 OCT sing 334 n n 
C4 C5 OCT sing 335 n n 
C4 H41 OCT sing 336 n n 
C4 H42 OCT sing 337 n n 
C5 C6 OCT sing 338 n n 
C5 H51 OCT sing 339 n n 
C5 H52 OCT sing 340 n n 
C6 C7 OCT sing 341 n n 
C6 H61 OCT sing 342 n n 
C6 H62 OCT sing 343 n n 
C7 C8 OCT sing 344 n n 
C7 H71 OCT sing 345 n n 
C7 H72 OCT sing 346 n n 
C8 H81 OCT sing 347 n n 
C8 H82 OCT sing 348 n n 
C8 H83 OCT sing 349 n n 
#
_atom_sites.entry_id                     6W7D 
_atom_sites.fract_transf_matrix[1][1]    0.014858 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008153 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007929 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 OCT A 1 401 1 OCT OCT . 
D 2 OCT A 1 402 4 OCT OCT . 
E 2 OCT A 1 403 8 OCT OCT . 
F 3 D12 A 1 404 1 D12 D12 . 
G 4 CD A 1 405 2 CD CD . 
H 4 CD A 1 406 3 CD CD . 
I 5 K A 1 407 1 K K . 
J 5 K A 1 408 2 K K . 
K 6 1PE A 1 409 1 1PE 1PE . 
L 2 OCT B 1 401 2 OCT OCT . 
M 2 OCT B 1 402 5 OCT OCT . 
N 3 D12 B 1 403 2 D12 D12 . 
O 3 D12 B 1 404 3 D12 D12 . 
P 7 LNK B 1 405 1 LNK LNK . 
Q 7 LNK B 1 406 2 LNK LNK . 
R 4 CD B 1 407 1 CD CD . 
S 8 R16 B 1 408 2 R16 R16 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OCT . . . L 2 -4.032 -8.831 -51.599 1 183.85 ? C1 OCT 401 B 1 
HETATM 2 C C2 OCT . . . L 2 -4.486 -10.222 -51.162 1 203 ? C2 OCT 401 B 1 
HETATM 3 C C3 OCT . . . L 2 -3.391 -11.239 -51.473 1 204.37 ? C3 OCT 401 B 1 
HETATM 4 C C4 OCT . . . L 2 -3.401 -12.315 -50.392 1 180.9 ? C4 OCT 401 B 1 
HETATM 5 C C5 OCT . . . L 2 -2.869 -13.63 -50.956 1 169.94 ? C5 OCT 401 B 1 
HETATM 6 C C6 OCT . . . L 2 -3.462 -14.778 -50.144 1 167.45 ? C6 OCT 401 B 1 
HETATM 7 C C7 OCT . . . L 2 -2.57 -16.01 -50.264 1 164.92 ? C7 OCT 401 B 1 
HETATM 8 C C8 OCT . . . L 2 -3.045 -17.074 -49.278 1 162.1 ? C8 OCT 401 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           8 
#