data_6W7D # _model_server_result.job_id 8bskQb7xMAQ3F8fBJg0lJg _model_server_result.datetime_utc '2024-11-13 07:18:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w7d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":406}' # _entry.id 6W7D # _exptl.entry_id 6W7D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 72.149 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PENTANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6W7D _cell.length_a 67.306 _cell.length_b 122.652 _cell.length_c 126.127 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W7D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 P N N ? 7 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 74 A CYS 93 1_555 B SG CYS 74 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc1 A O THR 123 A THR 142 1_555 I K K . A K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.802 ? metalc ? metalc2 A O THR 123 A THR 142 1_555 J K K . A K 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? metalc ? metalc3 A OG1 THR 123 A THR 142 1_555 J K K . A K 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.132 ? metalc ? metalc4 A O ILE 124 A ILE 143 1_555 I K K . A K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.918 ? metalc ? metalc5 A O THR 232 A THR 251 1_555 I K K . A K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? metalc ? metalc6 A O THR 232 A THR 251 1_555 J K K . A K 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? metalc ? metalc7 A OG1 THR 232 A THR 251 1_555 J K K . A K 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.157 ? metalc ? metalc8 A O ILE 233 A ILE 252 1_555 I K K . A K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.064 ? metalc ? metalc9 I K K . A K 407 1_555 B O THR 123 B THR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? metalc ? metalc10 I K K . A K 407 1_555 B O ILE 124 B ILE 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.985 ? metalc ? metalc11 I K K . A K 407 1_555 B O THR 232 B THR 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.452 ? metalc ? metalc12 I K K . A K 407 1_555 B O ILE 233 B ILE 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? metalc ? metalc13 J K K . A K 408 1_555 B O THR 123 B THR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.299 ? metalc ? metalc14 J K K . A K 408 1_555 B OG1 THR 123 B THR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.377 ? metalc ? metalc15 J K K . A K 408 1_555 B O THR 232 B THR 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc16 J K K . A K 408 1_555 B OG1 THR 232 B THR 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.227 ? # _chem_comp.formula 'C5 H12' _chem_comp.formula_weight 72.149 _chem_comp.id LNK _chem_comp.mon_nstd_flag . _chem_comp.name PENTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LNK sing 266 n n C1 H11 LNK sing 267 n n C1 H12 LNK sing 268 n n C1 H13 LNK sing 269 n n C2 C3 LNK sing 270 n n C2 H21 LNK sing 271 n n C2 H22 LNK sing 272 n n C3 C4 LNK sing 273 n n C3 H31 LNK sing 274 n n C3 H32 LNK sing 275 n n C4 C5 LNK sing 276 n n C4 H41 LNK sing 277 n n C4 H42 LNK sing 278 n n C5 H51 LNK sing 279 n n C5 H52 LNK sing 280 n n C5 H23 LNK sing 281 n n # _atom_sites.entry_id 6W7D _atom_sites.fract_transf_matrix[1][1] 0.014858 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008153 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007929 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OCT A 1 401 1 OCT OCT . D 2 OCT A 1 402 4 OCT OCT . E 2 OCT A 1 403 8 OCT OCT . F 3 D12 A 1 404 1 D12 D12 . G 4 CD A 1 405 2 CD CD . H 4 CD A 1 406 3 CD CD . I 5 K A 1 407 1 K K . J 5 K A 1 408 2 K K . K 6 1PE A 1 409 1 1PE 1PE . L 2 OCT B 1 401 2 OCT OCT . M 2 OCT B 1 402 5 OCT OCT . N 3 D12 B 1 403 2 D12 D12 . O 3 D12 B 1 404 3 D12 D12 . P 7 LNK B 1 405 1 LNK LNK . Q 7 LNK B 1 406 2 LNK LNK . R 4 CD B 1 407 1 CD CD . S 8 R16 B 1 408 2 R16 R16 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LNK . . . Q 7 10.263 -23.466 -50.603 1 258.8 ? C1 LNK 406 B 1 HETATM 2 C C2 LNK . . . Q 7 11.645 -22.88 -50.311 1 295.31 ? C2 LNK 406 B 1 HETATM 3 C C3 LNK . . . Q 7 11.688 -21.415 -50.745 1 298.98 ? C3 LNK 406 B 1 HETATM 4 C C4 LNK . . . Q 7 13.071 -20.827 -50.466 1 291.2 ? C4 LNK 406 B 1 HETATM 5 C C5 LNK . . . Q 7 13.159 -19.415 -51.044 1 276.94 ? C5 LNK 406 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #