data_6W7E # _model_server_result.job_id JmLbmYtC2tnHx1MusLL0RA _model_server_result.datetime_utc '2024-11-23 01:01:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w7e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 6W7E # _exptl.entry_id 6W7E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 72.149 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PENTANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6W7E _cell.length_a 67.368 _cell.length_b 122.534 _cell.length_c 126.552 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W7E _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 74 A CYS 93 1_555 B SG CYS 74 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A O THR 123 A THR 142 1_555 H K K . A K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc2 A O THR 123 A THR 142 1_555 P K K . B K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.19 ? metalc ? metalc3 A OG1 THR 123 A THR 142 1_555 P K K . B K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.284 ? metalc ? metalc4 A O ILE 124 A ILE 143 1_555 H K K . A K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.977 ? metalc ? metalc5 A O THR 232 A THR 251 1_555 H K K . A K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.04 ? metalc ? metalc6 A O THR 232 A THR 251 1_555 P K K . B K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc7 A OG1 THR 232 A THR 251 1_555 P K K . B K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.307 ? metalc ? metalc8 A O ILE 233 A ILE 252 1_555 H K K . A K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc9 H K K . A K 406 1_555 B O THR 123 B THR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc10 H K K . A K 406 1_555 B O ILE 124 B ILE 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.001 ? metalc ? metalc11 H K K . A K 406 1_555 B O THR 232 B THR 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc12 H K K . A K 406 1_555 B O ILE 233 B ILE 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? metalc ? metalc13 B O THR 123 B THR 142 1_555 P K K . B K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.136 ? metalc ? metalc14 B OG1 THR 123 B THR 142 1_555 P K K . B K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.044 ? metalc ? metalc15 B O THR 232 B THR 251 1_555 P K K . B K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc16 B OG1 THR 232 B THR 251 1_555 P K K . B K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.921 ? # _chem_comp.formula 'C5 H12' _chem_comp.formula_weight 72.149 _chem_comp.id LNK _chem_comp.mon_nstd_flag . _chem_comp.name PENTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LNK sing 266 n n C1 H11 LNK sing 267 n n C1 H12 LNK sing 268 n n C1 H13 LNK sing 269 n n C2 C3 LNK sing 270 n n C2 H21 LNK sing 271 n n C2 H22 LNK sing 272 n n C3 C4 LNK sing 273 n n C3 H31 LNK sing 274 n n C3 H32 LNK sing 275 n n C4 C5 LNK sing 276 n n C4 H41 LNK sing 277 n n C4 H42 LNK sing 278 n n C5 H51 LNK sing 279 n n C5 H52 LNK sing 280 n n C5 H23 LNK sing 281 n n # _atom_sites.entry_id 6W7E _atom_sites.fract_transf_matrix[1][1] 0.014844 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008161 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007902 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CD A 1 401 1 CD CD . D 2 CD A 1 402 3 CD CD . E 3 1PE A 1 403 1 1PE 1PE . F 4 LNK A 1 404 2 LNK LNK . G 5 OCT A 1 405 2 OCT OCT . H 6 K A 1 406 2 K K . I 7 PIO A 1 407 1 PIO PIO . J 2 CD B 1 401 2 CD CD . K 2 CD B 1 402 4 CD CD . L 4 LNK B 1 403 1 LNK LNK . M 5 OCT B 1 404 1 OCT OCT . N 5 OCT B 1 405 3 OCT OCT . O 8 D12 B 1 406 1 D12 D12 . P 6 K B 1 407 1 K K . Q 9 R16 B 1 408 1 R16 R16 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LNK . . . F 4 17.098 -21.085 -7.866 1 178.36 ? C1 LNK 404 A 1 HETATM 2 C C2 LNK . . . F 4 16.357 -20.057 -7.014 1 175.68 ? C2 LNK 404 A 1 HETATM 3 C C3 LNK . . . F 4 14.938 -20.554 -6.748 1 176.35 ? C3 LNK 404 A 1 HETATM 4 C C4 LNK . . . F 4 14.216 -20.755 -8.08 1 180.51 ? C4 LNK 404 A 1 HETATM 5 C C5 LNK . . . F 4 13.455 -22.079 -8.067 1 179.12 ? C5 LNK 404 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #