data_6W7H # _model_server_result.job_id W_pc86L7an78Gi4HujNYmA _model_server_result.datetime_utc '2024-11-07 09:55:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w7h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 6W7H # _exptl.entry_id 6W7H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.123 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-methyl-2-oxo-2,5-dihydropyrimidine-4-carboxylic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6W7H _cell.length_a 87.959 _cell.length_b 87.959 _cell.length_c 83.467 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W7H _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C6 H6 N2 O3' _chem_comp.formula_weight 154.123 _chem_comp.id TEV _chem_comp.mon_nstd_flag . _chem_comp.name '6-methyl-2-oxo-2,5-dihydropyrimidine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C1 TEV doub 290 n n C5 C4 TEV sing 291 n n C3 C4 TEV sing 292 n n C3 C2 TEV sing 293 n n C4 N1 TEV doub 294 n n C1 C2 TEV sing 295 n n C1 O1 TEV sing 296 n n C2 N2 TEV doub 297 n n N1 C9 TEV sing 298 n n N2 C9 TEV sing 299 n n C9 O3 TEV doub 300 n n C5 H1 TEV sing 301 n n C5 H2 TEV sing 302 n n C5 H3 TEV sing 303 n n C3 H4 TEV sing 304 n n C3 H5 TEV sing 305 n n O1 H6 TEV sing 306 n n # _atom_sites.entry_id 6W7H _atom_sites.fract_transf_matrix[1][1] 0.011369 _atom_sites.fract_transf_matrix[1][2] 0.006564 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013128 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011981 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 TEV A 1 201 201 TEV MMO . F 2 TEV B 1 201 201 TEV MMO . G 2 TEV C 1 201 201 TEV MMO . H 2 TEV D 1 201 201 TEV MMO . I 3 HOH A 1 301 61 HOH HOH . I 3 HOH A 2 302 2 HOH HOH . I 3 HOH A 3 303 22 HOH HOH . I 3 HOH A 4 304 47 HOH HOH . I 3 HOH A 5 305 72 HOH HOH . I 3 HOH A 6 306 65 HOH HOH . I 3 HOH A 7 307 114 HOH HOH . I 3 HOH A 8 308 50 HOH HOH . I 3 HOH A 9 309 62 HOH HOH . I 3 HOH A 10 310 82 HOH HOH . I 3 HOH A 11 311 13 HOH HOH . I 3 HOH A 12 312 11 HOH HOH . I 3 HOH A 13 313 98 HOH HOH . I 3 HOH A 14 314 70 HOH HOH . I 3 HOH A 15 315 45 HOH HOH . I 3 HOH A 16 316 41 HOH HOH . I 3 HOH A 17 317 27 HOH HOH . I 3 HOH A 18 318 33 HOH HOH . I 3 HOH A 19 319 8 HOH HOH . I 3 HOH A 20 320 117 HOH HOH . I 3 HOH A 21 321 35 HOH HOH . I 3 HOH A 22 322 32 HOH HOH . I 3 HOH A 23 323 9 HOH HOH . I 3 HOH A 24 324 75 HOH HOH . I 3 HOH A 25 325 34 HOH HOH . I 3 HOH A 26 326 97 HOH HOH . I 3 HOH A 27 327 4 HOH HOH . I 3 HOH A 28 328 115 HOH HOH . I 3 HOH A 29 329 15 HOH HOH . I 3 HOH A 30 330 59 HOH HOH . I 3 HOH A 31 331 89 HOH HOH . I 3 HOH A 32 332 64 HOH HOH . I 3 HOH A 33 333 20 HOH HOH . I 3 HOH A 34 334 52 HOH HOH . I 3 HOH A 35 335 30 HOH HOH . I 3 HOH A 36 336 16 HOH HOH . I 3 HOH A 37 337 66 HOH HOH . I 3 HOH A 38 338 77 HOH HOH . I 3 HOH A 39 339 101 HOH HOH . I 3 HOH A 40 340 5 HOH HOH . I 3 HOH A 41 341 68 HOH HOH . I 3 HOH A 42 342 29 HOH HOH . I 3 HOH A 43 343 93 HOH HOH . I 3 HOH A 44 344 116 HOH HOH . I 3 HOH A 45 345 12 HOH HOH . I 3 HOH A 46 346 31 HOH HOH . I 3 HOH A 47 347 18 HOH HOH . I 3 HOH A 48 348 110 HOH HOH . I 3 HOH A 49 349 51 HOH HOH . J 3 HOH B 1 301 96 HOH HOH . J 3 HOH B 2 302 84 HOH HOH . J 3 HOH B 3 303 78 HOH HOH . J 3 HOH B 4 304 25 HOH HOH . J 3 HOH B 5 305 6 HOH HOH . J 3 HOH B 6 306 1 HOH HOH . J 3 HOH B 7 307 26 HOH HOH . J 3 HOH B 8 308 104 HOH HOH . J 3 HOH B 9 309 14 HOH HOH . J 3 HOH B 10 310 54 HOH HOH . J 3 HOH B 11 311 105 HOH HOH . J 3 HOH B 12 312 23 HOH HOH . J 3 HOH B 13 313 28 HOH HOH . J 3 HOH B 14 314 74 HOH HOH . J 3 HOH B 15 315 80 HOH HOH . J 3 HOH B 16 316 36 HOH HOH . J 3 HOH B 17 317 67 HOH HOH . J 3 HOH B 18 318 91 HOH HOH . J 3 HOH B 19 319 81 HOH HOH . J 3 HOH B 20 320 83 HOH HOH . J 3 HOH B 21 321 94 HOH HOH . J 3 HOH B 22 322 10 HOH HOH . J 3 HOH B 23 323 42 HOH HOH . J 3 HOH B 24 324 90 HOH HOH . J 3 HOH B 25 325 109 HOH HOH . J 3 HOH B 26 326 71 HOH HOH . J 3 HOH B 27 327 60 HOH HOH . J 3 HOH B 28 328 73 HOH HOH . J 3 HOH B 29 329 57 HOH HOH . J 3 HOH B 30 330 19 HOH HOH . J 3 HOH B 31 331 55 HOH HOH . K 3 HOH C 1 301 99 HOH HOH . K 3 HOH C 2 302 95 HOH HOH . K 3 HOH C 3 303 49 HOH HOH . K 3 HOH C 4 304 87 HOH HOH . K 3 HOH C 5 305 103 HOH HOH . K 3 HOH C 6 306 39 HOH HOH . K 3 HOH C 7 307 63 HOH HOH . K 3 HOH C 8 308 43 HOH HOH . K 3 HOH C 9 309 3 HOH HOH . K 3 HOH C 10 310 108 HOH HOH . K 3 HOH C 11 311 7 HOH HOH . K 3 HOH C 12 312 69 HOH HOH . K 3 HOH C 13 313 79 HOH HOH . K 3 HOH C 14 314 106 HOH HOH . K 3 HOH C 15 315 113 HOH HOH . K 3 HOH C 16 316 53 HOH HOH . K 3 HOH C 17 317 112 HOH HOH . K 3 HOH C 18 318 38 HOH HOH . K 3 HOH C 19 319 86 HOH HOH . K 3 HOH C 20 320 56 HOH HOH . K 3 HOH C 21 321 88 HOH HOH . K 3 HOH C 22 322 17 HOH HOH . K 3 HOH C 23 323 102 HOH HOH . K 3 HOH C 24 324 107 HOH HOH . K 3 HOH C 25 325 21 HOH HOH . K 3 HOH C 26 326 44 HOH HOH . K 3 HOH C 27 327 37 HOH HOH . K 3 HOH C 28 328 85 HOH HOH . L 3 HOH D 1 301 58 HOH HOH . L 3 HOH D 2 302 100 HOH HOH . L 3 HOH D 3 303 48 HOH HOH . L 3 HOH D 4 304 111 HOH HOH . L 3 HOH D 5 305 40 HOH HOH . L 3 HOH D 6 306 92 HOH HOH . L 3 HOH D 7 307 24 HOH HOH . L 3 HOH D 8 308 46 HOH HOH . L 3 HOH D 9 309 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 TEV . . . F 2 35.9 -8.687 8.09 1 29.71 ? O3 TEV 201 B 1 HETATM 2 C C9 TEV . . . F 2 35.988 -7.962 9.106 1 29.68 ? C9 TEV 201 B 1 HETATM 3 N N2 TEV . . . F 2 34.998 -7.914 10.02 1 26.9 ? N2 TEV 201 B 1 HETATM 4 N N1 TEV . . . F 2 37.148 -7.273 9.303 1 33.91 ? N1 TEV 201 B 1 HETATM 5 C C4 TEV . . . F 2 37.286 -6.464 10.409 1 31.55 ? C4 TEV 201 B 1 HETATM 6 C C5 TEV . . . F 2 38.542 -5.652 10.639 1 32.6 ? C5 TEV 201 B 1 HETATM 7 C C3 TEV . . . F 2 36.28 -6.409 11.335 1 32.53 ? C3 TEV 201 B 1 HETATM 8 C C2 TEV . . . F 2 35.107 -7.142 11.121 1 29.47 ? C2 TEV 201 B 1 HETATM 9 C C1 TEV . . . F 2 34.054 -7.073 12.17 1 36 ? C1 TEV 201 B 1 HETATM 10 O O1 TEV . . . F 2 33.589 -8.123 12.694 1 38.47 ? O1 TEV 201 B 1 HETATM 11 O O2 TEV . . . F 2 33.628 -5.95 12.536 1 37.04 ? O2 TEV 201 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 11 #