data_6W7X # _model_server_result.job_id mO9FPuBQYwDWxQs0G4wLlQ _model_server_result.datetime_utc '2025-02-28 19:02:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w7x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6W7X # _exptl.entry_id 6W7X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6W7X _cell.length_a 63.82 _cell.length_b 63.82 _cell.length_c 172.48 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W7X _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -57.493333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6W7X _atom_sites.fract_transf_matrix[1][1] 0.015669 _atom_sites.fract_transf_matrix[1][2] 0.009047 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018093 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005798 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 501 GOL GOL . C 3 HOH A 1 601 34 HOH HOH . C 3 HOH A 2 602 57 HOH HOH . C 3 HOH A 3 603 81 HOH HOH . C 3 HOH A 4 604 55 HOH HOH . C 3 HOH A 5 605 66 HOH HOH . C 3 HOH A 6 606 97 HOH HOH . C 3 HOH A 7 607 83 HOH HOH . C 3 HOH A 8 608 149 HOH HOH . C 3 HOH A 9 609 54 HOH HOH . C 3 HOH A 10 610 5 HOH HOH . C 3 HOH A 11 611 38 HOH HOH . C 3 HOH A 12 612 69 HOH HOH . C 3 HOH A 13 613 37 HOH HOH . C 3 HOH A 14 614 40 HOH HOH . C 3 HOH A 15 615 145 HOH HOH . C 3 HOH A 16 616 65 HOH HOH . C 3 HOH A 17 617 175 HOH HOH . C 3 HOH A 18 618 82 HOH HOH . C 3 HOH A 19 619 41 HOH HOH . C 3 HOH A 20 620 56 HOH HOH . C 3 HOH A 21 621 117 HOH HOH . C 3 HOH A 22 622 27 HOH HOH . C 3 HOH A 23 623 144 HOH HOH . C 3 HOH A 24 624 48 HOH HOH . C 3 HOH A 25 625 51 HOH HOH . C 3 HOH A 26 626 137 HOH HOH . C 3 HOH A 27 627 6 HOH HOH . C 3 HOH A 28 628 17 HOH HOH . C 3 HOH A 29 629 166 HOH HOH . C 3 HOH A 30 630 22 HOH HOH . C 3 HOH A 31 631 25 HOH HOH . C 3 HOH A 32 632 2 HOH HOH . C 3 HOH A 33 633 8 HOH HOH . C 3 HOH A 34 634 47 HOH HOH . C 3 HOH A 35 635 36 HOH HOH . C 3 HOH A 36 636 160 HOH HOH . C 3 HOH A 37 637 180 HOH HOH . C 3 HOH A 38 638 84 HOH HOH . C 3 HOH A 39 639 9 HOH HOH . C 3 HOH A 40 640 98 HOH HOH . C 3 HOH A 41 641 72 HOH HOH . C 3 HOH A 42 642 73 HOH HOH . C 3 HOH A 43 643 164 HOH HOH . C 3 HOH A 44 644 26 HOH HOH . C 3 HOH A 45 645 105 HOH HOH . C 3 HOH A 46 646 115 HOH HOH . C 3 HOH A 47 647 15 HOH HOH . C 3 HOH A 48 648 103 HOH HOH . C 3 HOH A 49 649 3 HOH HOH . C 3 HOH A 50 650 53 HOH HOH . C 3 HOH A 51 651 140 HOH HOH . C 3 HOH A 52 652 18 HOH HOH . C 3 HOH A 53 653 167 HOH HOH . C 3 HOH A 54 654 32 HOH HOH . C 3 HOH A 55 655 58 HOH HOH . C 3 HOH A 56 656 10 HOH HOH . C 3 HOH A 57 657 147 HOH HOH . C 3 HOH A 58 658 59 HOH HOH . C 3 HOH A 59 659 156 HOH HOH . C 3 HOH A 60 660 45 HOH HOH . C 3 HOH A 61 661 71 HOH HOH . C 3 HOH A 62 662 119 HOH HOH . C 3 HOH A 63 663 19 HOH HOH . C 3 HOH A 64 664 28 HOH HOH . C 3 HOH A 65 665 152 HOH HOH . C 3 HOH A 66 666 90 HOH HOH . C 3 HOH A 67 667 29 HOH HOH . C 3 HOH A 68 668 141 HOH HOH . C 3 HOH A 69 669 87 HOH HOH . C 3 HOH A 70 670 23 HOH HOH . C 3 HOH A 71 671 86 HOH HOH . C 3 HOH A 72 672 124 HOH HOH . C 3 HOH A 73 673 150 HOH HOH . C 3 HOH A 74 674 110 HOH HOH . C 3 HOH A 75 675 131 HOH HOH . C 3 HOH A 76 676 186 HOH HOH . C 3 HOH A 77 677 4 HOH HOH . C 3 HOH A 78 678 14 HOH HOH . C 3 HOH A 79 679 52 HOH HOH . C 3 HOH A 80 680 185 HOH HOH . C 3 HOH A 81 681 33 HOH HOH . C 3 HOH A 82 682 95 HOH HOH . C 3 HOH A 83 683 121 HOH HOH . C 3 HOH A 84 684 184 HOH HOH . C 3 HOH A 85 685 168 HOH HOH . C 3 HOH A 86 686 64 HOH HOH . C 3 HOH A 87 687 89 HOH HOH . C 3 HOH A 88 688 76 HOH HOH . C 3 HOH A 89 689 120 HOH HOH . C 3 HOH A 90 690 67 HOH HOH . C 3 HOH A 91 691 77 HOH HOH . C 3 HOH A 92 692 129 HOH HOH . C 3 HOH A 93 693 20 HOH HOH . C 3 HOH A 94 694 111 HOH HOH . C 3 HOH A 95 695 79 HOH HOH . C 3 HOH A 96 696 161 HOH HOH . C 3 HOH A 97 697 112 HOH HOH . C 3 HOH A 98 698 16 HOH HOH . C 3 HOH A 99 699 61 HOH HOH . C 3 HOH A 100 700 143 HOH HOH . C 3 HOH A 101 701 148 HOH HOH . C 3 HOH A 102 702 42 HOH HOH . C 3 HOH A 103 703 21 HOH HOH . C 3 HOH A 104 704 60 HOH HOH . C 3 HOH A 105 705 49 HOH HOH . C 3 HOH A 106 706 31 HOH HOH . C 3 HOH A 107 707 44 HOH HOH . C 3 HOH A 108 708 12 HOH HOH . C 3 HOH A 109 709 123 HOH HOH . C 3 HOH A 110 710 116 HOH HOH . C 3 HOH A 111 711 11 HOH HOH . C 3 HOH A 112 712 7 HOH HOH . C 3 HOH A 113 713 108 HOH HOH . C 3 HOH A 114 714 46 HOH HOH . C 3 HOH A 115 715 151 HOH HOH . C 3 HOH A 116 716 183 HOH HOH . C 3 HOH A 117 717 62 HOH HOH . C 3 HOH A 118 718 138 HOH HOH . C 3 HOH A 119 719 162 HOH HOH . C 3 HOH A 120 720 63 HOH HOH . C 3 HOH A 121 721 35 HOH HOH . C 3 HOH A 122 722 80 HOH HOH . C 3 HOH A 123 723 70 HOH HOH . C 3 HOH A 124 724 114 HOH HOH . C 3 HOH A 125 725 173 HOH HOH . C 3 HOH A 126 726 1 HOH HOH . C 3 HOH A 127 727 187 HOH HOH . C 3 HOH A 128 728 109 HOH HOH . C 3 HOH A 129 729 139 HOH HOH . C 3 HOH A 130 730 155 HOH HOH . C 3 HOH A 131 731 101 HOH HOH . C 3 HOH A 132 732 75 HOH HOH . C 3 HOH A 133 733 154 HOH HOH . C 3 HOH A 134 734 118 HOH HOH . C 3 HOH A 135 735 163 HOH HOH . C 3 HOH A 136 736 177 HOH HOH . C 3 HOH A 137 737 174 HOH HOH . C 3 HOH A 138 738 169 HOH HOH . C 3 HOH A 139 739 50 HOH HOH . C 3 HOH A 140 740 100 HOH HOH . C 3 HOH A 141 741 92 HOH HOH . C 3 HOH A 142 742 78 HOH HOH . C 3 HOH A 143 743 39 HOH HOH . C 3 HOH A 144 744 99 HOH HOH . C 3 HOH A 145 745 128 HOH HOH . C 3 HOH A 146 746 157 HOH HOH . C 3 HOH A 147 747 93 HOH HOH . C 3 HOH A 148 748 127 HOH HOH . C 3 HOH A 149 749 178 HOH HOH . C 3 HOH A 150 750 170 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -3.221 -30.932 -8.478 1 86.1 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . B 2 -2.265 -31.774 -7.887 1 86.9 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . B 2 -3.984 -30.278 -7.306 1 91.55 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . B 2 -3.122 -29.976 -6.273 1 99.37 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . B 2 -4.676 -29.003 -7.875 1 87.74 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . B 2 -5.547 -29.394 -8.899 1 80.4 ? O3 GOL 501 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #