data_6W8C
#
_model_server_result.job_id            bBzkVF83PBtwpV5CTubQoA 
_model_server_result.datetime_utc      '2024-11-05 09:29:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6w8c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":409}' 
#
_entry.id    6W8C 
#
_exptl.entry_id    6W8C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              278.342 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'heptyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6W8C 
_cell.length_a            67.129 
_cell.length_b            119.783 
_cell.length_c            128.872 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6W8C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 K N N 
? 5 W N N 
? 5 X N N 
? 5 Y N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 74 A CYS 93 1_555 B SG CYS 74 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc1 A O THR 123 A THR 142 1_555 F K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? 
metalc ? metalc2 A OG1 THR 123 A THR 142 1_555 N K K . A K 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.148 ? 
metalc ? metalc3 A O ILE 124 A ILE 143 1_555 E K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.33 ? 
metalc ? metalc4 A O GLY 125 A GLY 144 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.395 ? 
metalc ? metalc5 A O GLY 125 A GLY 144 1_555 E K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.275 ? 
metalc ? metalc6 A O PHE 126 A PHE 145 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? 
metalc ? metalc7 A O THR 232 A THR 251 1_555 F K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? 
metalc ? metalc8 A O THR 232 A THR 251 1_555 N K K . A K 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.097 ? 
metalc ? metalc9 A OG1 THR 232 A THR 251 1_555 N K K . A K 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? 
metalc ? metalc10 A O ILE 233 A ILE 252 1_555 E K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.042 ? 
metalc ? metalc11 A O ILE 233 A ILE 252 1_555 F K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? 
metalc ? metalc12 A O GLY 234 A GLY 253 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.322 ? 
metalc ? metalc13 A O GLY 234 A GLY 253 1_555 E K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.433 ? 
metalc ? metalc14 A O PHE 235 A PHE 254 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? 
metalc ? metalc15 A OE1 GLU 290 A GLU 309 1_555 Q CD CD . B CD 403 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc16 A NE2 HIS 294 A HIS 313 1_555 Q CD CD . B CD 403 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc17 D K K . A K 402 1_555 B O GLY 125 B GLY 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.399 ? 
metalc ? metalc18 D K K . A K 402 1_555 B O PHE 126 B PHE 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.947 ? 
metalc ? metalc19 D K K . A K 402 1_555 B O GLY 234 B GLY 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.326 ? 
metalc ? metalc20 D K K . A K 402 1_555 B O PHE 235 B PHE 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.005 ? 
metalc ? metalc21 E K K . A K 403 1_555 B O ILE 124 B ILE 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.029 ? 
metalc ? metalc22 E K K . A K 403 1_555 B O GLY 125 B GLY 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.212 ? 
metalc ? metalc23 E K K . A K 403 1_555 B O ILE 233 B ILE 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? 
metalc ? metalc24 E K K . A K 403 1_555 B O GLY 234 B GLY 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.144 ? 
metalc ? metalc25 F K K . A K 404 1_555 B O THR 123 B THR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? 
metalc ? metalc26 F K K . A K 404 1_555 B O THR 232 B THR 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? 
metalc ? metalc27 F K K . A K 404 1_555 B O ILE 233 B ILE 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.127 ? 
metalc ? metalc28 N K K . A K 412 1_555 B O THR 123 B THR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.39 ? 
metalc ? metalc29 N K K . A K 412 1_555 B OG1 THR 123 B THR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? 
metalc ? metalc30 N K K . A K 412 1_555 B O THR 232 B THR 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.256 ? 
metalc ? metalc31 N K K . A K 412 1_555 B OG1 THR 232 B THR 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.096 ? 
metalc ? metalc32 B OD2 ASP 109 B ASP 128 1_555 R CD CD . B CD 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc33 B OE1 GLU 290 B GLU 309 1_555 Q CD CD . B CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc34 B NE2 HIS 294 B HIS 313 1_555 Q CD CD . B CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
#
_chem_comp.formula           'C13 H26 O6' 
_chem_comp.formula_weight    278.342 
_chem_comp.id                B7G 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'heptyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'HEPTYL-BETA-D-GLUCOPYRANOSIDE;heptyl beta-D-glucoside;heptyl D-glucoside;heptyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C5 O5 B7G sing 104 n n 
C5 C4 B7G sing 105 n n 
C5 C6 B7G sing 106 n n 
C5 H5 B7G sing 107 n n 
O5 C1 B7G sing 108 n n 
C1 C2 B7G sing 109 n n 
C1 O1 B7G sing 110 n n 
C1 H1 B7G sing 111 n n 
C2 C3 B7G sing 112 n n 
C2 O2 B7G sing 113 n n 
C2 H2 B7G sing 114 n n 
C3 C4 B7G sing 115 n n 
C3 O3 B7G sing 116 n n 
C3 H3 B7G sing 117 n n 
C4 O4 B7G sing 118 n n 
C4 H4 B7G sing 119 n n 
C6 O6 B7G sing 120 n n 
C6 H61 B7G sing 121 n n 
C6 H62 B7G sing 122 n n 
O1 C7 B7G sing 123 n n 
C7 C8 B7G sing 124 n n 
C7 H71 B7G sing 125 n n 
C7 H72 B7G sing 126 n n 
C8 C9 B7G sing 127 n n 
C8 H81 B7G sing 128 n n 
C8 H82 B7G sing 129 n n 
C9 C10 B7G sing 130 n n 
C9 H91 B7G sing 131 n n 
C9 H92 B7G sing 132 n n 
C10 C11 B7G sing 133 n n 
C10 H101 B7G sing 134 n n 
C10 H102 B7G sing 135 n n 
C11 C12 B7G sing 136 n n 
C11 H111 B7G sing 137 n n 
C11 H112 B7G sing 138 n n 
C12 C13 B7G sing 139 n n 
C12 H121 B7G sing 140 n n 
C12 H122 B7G sing 141 n n 
O2 HO2 B7G sing 142 n n 
O3 HO3 B7G sing 143 n n 
O4 HO4 B7G sing 144 n n 
O6 HO6 B7G sing 145 n n 
C13 H131 B7G sing 146 n n 
C13 H132 B7G sing 147 n n 
C13 H133 B7G sing 148 n n 
#
_pdbx_chem_comp_identifier.comp_id            B7G 
_pdbx_chem_comp_identifier.identifier         heptyl-b-D-Glucopyranoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     6W8C 
_atom_sites.fract_transf_matrix[1][1]    0.014897 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008348 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00776 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 K A 1 401 2 K K . 
D 2 K A 1 402 3 K K . 
E 2 K A 1 403 4 K K . 
F 2 K A 1 404 5 K K . 
G 3 R16 A 1 405 2 R16 R16 . 
H 3 R16 A 1 406 3 R16 R16 . 
I 3 R16 A 1 407 5 R16 R16 . 
J 4 Q6F A 1 408 406 Q6F Q6F . 
K 5 B7G A 1 409 2 B7G B7G . 
L 6 IEP A 1 410 1 IEP IEP . 
M 7 11A A 1 411 1 11A 11A . 
N 2 K A 1 412 6 K K . 
O 2 K B 1 401 1 K K . 
P 8 CD B 1 402 1 CD CD . 
Q 8 CD B 1 403 2 CD CD . 
R 8 CD B 1 404 3 CD CD . 
S 9 OCT B 1 405 1 OCT OCT . 
T 9 OCT B 1 406 3 OCT OCT . 
U 10 D12 B 1 407 1 D12 D12 . 
V 10 D12 B 1 408 2 D12 D12 . 
W 5 B7G B 1 409 1 B7G B7G . 
X 5 B7G B 1 410 3 B7G B7G . 
Y 5 B7G B 1 411 4 B7G B7G . 
Z 11 UND B 1 412 1 UND UND . 
AA 6 IEP B 1 413 2 IEP IEP . 
BA 7 11A B 1 414 2 11A 11A . 
CA 4 Q6F B 1 415 410 Q6F Q6F . 
DA 12 LNK B 1 416 1 LNK LNK . 
EA 13 HOH A 1 501 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C5 B7G . . . W 5 31.334 -24.344 -28.501 1 140.34 ? C5 B7G 409 B 1 
HETATM 2 O O5 B7G . . . W 5 32.209 -25.456 -28.05 1 141.87 ? O5 B7G 409 B 1 
HETATM 3 C C1 B7G . . . W 5 32.893 -25.203 -26.747 1 142.66 ? C1 B7G 409 B 1 
HETATM 4 C C2 B7G . . . W 5 33.614 -23.829 -26.763 1 141.13 ? C2 B7G 409 B 1 
HETATM 5 C C3 B7G . . . W 5 32.792 -22.723 -27.362 1 138.71 ? C3 B7G 409 B 1 
HETATM 6 C C4 B7G . . . W 5 32.261 -23.121 -28.698 1 139.2 ? C4 B7G 409 B 1 
HETATM 7 C C6 B7G . . . W 5 30.584 -24.838 -29.691 1 140.43 ? C6 B7G 409 B 1 
HETATM 8 O O1 B7G . . . W 5 33.796 -26.205 -26.526 1 146.21 ? O1 B7G 409 B 1 
HETATM 9 C C7 B7G . . . W 5 33.358 -27.543 -26.609 1 150.57 ? C7 B7G 409 B 1 
HETATM 10 C C8 B7G . . . W 5 33.981 -28.274 -27.812 1 155.41 ? C8 B7G 409 B 1 
HETATM 11 C C9 B7G . . . W 5 33.272 -29.598 -28.138 1 158.16 ? C9 B7G 409 B 1 
HETATM 12 C C10 B7G . . . W 5 33.657 -30.699 -27.141 1 159.77 ? C10 B7G 409 B 1 
HETATM 13 C C11 B7G . . . W 5 32.895 -32.002 -27.428 1 160.44 ? C11 B7G 409 B 1 
HETATM 14 C C12 B7G . . . W 5 33.098 -33.02 -26.298 1 160.16 ? C12 B7G 409 B 1 
HETATM 15 O O2 B7G . . . W 5 33.995 -23.581 -25.404 1 140.37 ? O2 B7G 409 B 1 
HETATM 16 O O3 B7G . . . W 5 33.561 -21.461 -27.447 1 136.55 ? O3 B7G 409 B 1 
HETATM 17 O O4 B7G . . . W 5 31.626 -22.061 -29.43 1 137.33 ? O4 B7G 409 B 1 
HETATM 18 O O6 B7G . . . W 5 31.28 -24.601 -30.877 1 141.15 ? O6 B7G 409 B 1 
HETATM 19 C C13 B7G . . . W 5 31.955 -34.042 -26.264 1 159.74 ? C13 B7G 409 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           19 
#