data_6W8C # _model_server_result.job_id ZOpoWe7mxg7gSoG87W7UuA _model_server_result.datetime_utc '2024-11-23 00:51:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w8c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":411}' # _entry.id 6W8C # _exptl.entry_id 6W8C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 186.291 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'UNDECANOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6W8C _cell.length_a 67.129 _cell.length_b 119.783 _cell.length_c 128.872 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W8C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 M N N ? 7 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 74 A CYS 93 1_555 B SG CYS 74 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc1 A O THR 123 A THR 142 1_555 F K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? metalc ? metalc2 A OG1 THR 123 A THR 142 1_555 N K K . A K 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.148 ? metalc ? metalc3 A O ILE 124 A ILE 143 1_555 E K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.33 ? metalc ? metalc4 A O GLY 125 A GLY 144 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.395 ? metalc ? metalc5 A O GLY 125 A GLY 144 1_555 E K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.275 ? metalc ? metalc6 A O PHE 126 A PHE 145 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? metalc ? metalc7 A O THR 232 A THR 251 1_555 F K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc8 A O THR 232 A THR 251 1_555 N K K . A K 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.097 ? metalc ? metalc9 A OG1 THR 232 A THR 251 1_555 N K K . A K 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? metalc ? metalc10 A O ILE 233 A ILE 252 1_555 E K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.042 ? metalc ? metalc11 A O ILE 233 A ILE 252 1_555 F K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? metalc ? metalc12 A O GLY 234 A GLY 253 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.322 ? metalc ? metalc13 A O GLY 234 A GLY 253 1_555 E K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.433 ? metalc ? metalc14 A O PHE 235 A PHE 254 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? metalc ? metalc15 A OE1 GLU 290 A GLU 309 1_555 Q CD CD . B CD 403 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc16 A NE2 HIS 294 A HIS 313 1_555 Q CD CD . B CD 403 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc17 D K K . A K 402 1_555 B O GLY 125 B GLY 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.399 ? metalc ? metalc18 D K K . A K 402 1_555 B O PHE 126 B PHE 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.947 ? metalc ? metalc19 D K K . A K 402 1_555 B O GLY 234 B GLY 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.326 ? metalc ? metalc20 D K K . A K 402 1_555 B O PHE 235 B PHE 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.005 ? metalc ? metalc21 E K K . A K 403 1_555 B O ILE 124 B ILE 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.029 ? metalc ? metalc22 E K K . A K 403 1_555 B O GLY 125 B GLY 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.212 ? metalc ? metalc23 E K K . A K 403 1_555 B O ILE 233 B ILE 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? metalc ? metalc24 E K K . A K 403 1_555 B O GLY 234 B GLY 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.144 ? metalc ? metalc25 F K K . A K 404 1_555 B O THR 123 B THR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? metalc ? metalc26 F K K . A K 404 1_555 B O THR 232 B THR 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc27 F K K . A K 404 1_555 B O ILE 233 B ILE 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.127 ? metalc ? metalc28 N K K . A K 412 1_555 B O THR 123 B THR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.39 ? metalc ? metalc29 N K K . A K 412 1_555 B OG1 THR 123 B THR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? metalc ? metalc30 N K K . A K 412 1_555 B O THR 232 B THR 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.256 ? metalc ? metalc31 N K K . A K 412 1_555 B OG1 THR 232 B THR 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.096 ? metalc ? metalc32 B OD2 ASP 109 B ASP 128 1_555 R CD CD . B CD 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc33 B OE1 GLU 290 B GLU 309 1_555 Q CD CD . B CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc34 B NE2 HIS 294 B HIS 313 1_555 Q CD CD . B CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? # _chem_comp.formula 'C11 H22 O2' _chem_comp.formula_weight 186.291 _chem_comp.id 11A _chem_comp.mon_nstd_flag . _chem_comp.name 'UNDECANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAD 11A sing 1 n n CAA HAA1 11A sing 2 n n CAA HAA2 11A sing 3 n n CAA HAA3 11A sing 4 n n CAD CAE 11A sing 5 n n CAD HAD1 11A sing 6 n n CAD HAD2 11A sing 7 n n CAE CAF 11A sing 8 n n CAE HAE1 11A sing 9 n n CAE HAE2 11A sing 10 n n CAF CAG 11A sing 11 n n CAF HAF1 11A sing 12 n n CAF HAF2 11A sing 13 n n CAG CAH 11A sing 14 n n CAG HAG1 11A sing 15 n n CAG HAG2 11A sing 16 n n CAH CAI 11A sing 17 n n CAH HAH1 11A sing 18 n n CAH HAH2 11A sing 19 n n CAI CAJ 11A sing 20 n n CAI HAI1 11A sing 21 n n CAI HAI2 11A sing 22 n n CAJ CAK 11A sing 23 n n CAJ HAJ1 11A sing 24 n n CAJ HAJ2 11A sing 25 n n CAK CAL 11A sing 26 n n CAK HAK1 11A sing 27 n n CAK HAK2 11A sing 28 n n CAL CAM 11A sing 29 n n CAL HAL1 11A sing 30 n n CAL HAL2 11A sing 31 n n CAM OAC 11A sing 32 n n CAM OAB 11A doub 33 n n OAC HAC 11A sing 34 n n # _atom_sites.entry_id 6W8C _atom_sites.fract_transf_matrix[1][1] 0.014897 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008348 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00776 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K A 1 401 2 K K . D 2 K A 1 402 3 K K . E 2 K A 1 403 4 K K . F 2 K A 1 404 5 K K . G 3 R16 A 1 405 2 R16 R16 . H 3 R16 A 1 406 3 R16 R16 . I 3 R16 A 1 407 5 R16 R16 . J 4 Q6F A 1 408 406 Q6F Q6F . K 5 B7G A 1 409 2 B7G B7G . L 6 IEP A 1 410 1 IEP IEP . M 7 11A A 1 411 1 11A 11A . N 2 K A 1 412 6 K K . O 2 K B 1 401 1 K K . P 8 CD B 1 402 1 CD CD . Q 8 CD B 1 403 2 CD CD . R 8 CD B 1 404 3 CD CD . S 9 OCT B 1 405 1 OCT OCT . T 9 OCT B 1 406 3 OCT OCT . U 10 D12 B 1 407 1 D12 D12 . V 10 D12 B 1 408 2 D12 D12 . W 5 B7G B 1 409 1 B7G B7G . X 5 B7G B 1 410 3 B7G B7G . Y 5 B7G B 1 411 4 B7G B7G . Z 11 UND B 1 412 1 UND UND . AA 6 IEP B 1 413 2 IEP IEP . BA 7 11A B 1 414 2 11A 11A . CA 4 Q6F B 1 415 410 Q6F Q6F . DA 12 LNK B 1 416 1 LNK LNK . EA 13 HOH A 1 501 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 11A . . . M 7 -12.35 -8.789 -33.028 1 130.29 ? CAA 11A 411 A 1 HETATM 2 C CAD 11A . . . M 7 -13.787 -9.206 -33.348 1 129.44 ? CAD 11A 411 A 1 HETATM 3 C CAE 11A . . . M 7 -13.869 -10.71 -33.634 1 127.94 ? CAE 11A 411 A 1 HETATM 4 C CAF 11A . . . M 7 -13.193 -11.076 -34.959 1 125.77 ? CAF 11A 411 A 1 HETATM 5 C CAG 11A . . . M 7 -13.427 -12.546 -35.344 1 123.03 ? CAG 11A 411 A 1 HETATM 6 C CAH 11A . . . M 7 -14.851 -12.785 -35.857 1 121.51 ? CAH 11A 411 A 1 HETATM 7 C CAI 11A . . . M 7 -15.065 -14.271 -36.171 1 121.72 ? CAI 11A 411 A 1 HETATM 8 C CAJ 11A . . . M 7 -16.18 -14.853 -35.293 1 121.94 ? CAJ 11A 411 A 1 HETATM 9 C CAK 11A . . . M 7 -16.35 -16.359 -35.536 1 123.89 ? CAK 11A 411 A 1 HETATM 10 C CAL 11A . . . M 7 -16.883 -17.058 -34.281 1 125.85 ? CAL 11A 411 A 1 HETATM 11 C CAM 11A . . . M 7 -16.946 -18.572 -34.475 1 126.99 ? CAM 11A 411 A 1 HETATM 12 O OAC 11A . . . M 7 -15.917 -19.25 -34.173 1 125.96 ? OAC 11A 411 A 1 HETATM 13 O OAB 11A . . . M 7 -18.022 -19.096 -34.906 1 128.42 ? OAB 11A 411 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #