data_6W8K # _model_server_result.job_id e88YMi_G6JT19kexUwyLXQ _model_server_result.datetime_utc '2024-11-07 09:56:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w8k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 6W8K # _exptl.entry_id 6W8K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 168.15 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5,6-dimethyl-2-oxo-2,3-dihydropyrimidine-4-carboxylic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6W8K _cell.length_a 88.013 _cell.length_b 88.013 _cell.length_c 83.552 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W8K _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C7 H8 N2 O3' _chem_comp.formula_weight 168.15 _chem_comp.id TJ4 _chem_comp.mon_nstd_flag . _chem_comp.name '5,6-dimethyl-2-oxo-2,3-dihydropyrimidine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C3 TJ4 sing 306 n n C5 C4 TJ4 sing 307 n n O1 C1 TJ4 doub 308 n n C3 C4 TJ4 sing 309 n n C3 C2 TJ4 doub 310 n n C4 N1 TJ4 doub 311 n n C1 C2 TJ4 sing 312 n n C1 O2 TJ4 sing 313 n n C2 N2 TJ4 sing 314 n n N1 C9 TJ4 sing 315 n n N2 C9 TJ4 sing 316 n n C9 O3 TJ4 doub 317 n n C5 H1 TJ4 sing 318 n n C5 H2 TJ4 sing 319 n n C5 H3 TJ4 sing 320 n n C6 H5 TJ4 sing 321 n n C6 H6 TJ4 sing 322 n n C6 H7 TJ4 sing 323 n n O2 H8 TJ4 sing 324 n n N2 H9 TJ4 sing 325 n n # _atom_sites.entry_id 6W8K _atom_sites.fract_transf_matrix[1][1] 0.011362 _atom_sites.fract_transf_matrix[1][2] 0.00656 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01312 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011969 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 TJ4 A 1 201 201 TJ4 DMO . F 2 TJ4 B 1 201 201 TJ4 DMO . G 2 TJ4 C 1 201 201 TJ4 DMO . H 2 TJ4 D 1 201 201 TJ4 DMO . I 3 HOH A 1 301 46 HOH HOH . I 3 HOH A 2 302 86 HOH HOH . I 3 HOH A 3 303 44 HOH HOH . I 3 HOH A 4 304 103 HOH HOH . I 3 HOH A 5 305 50 HOH HOH . I 3 HOH A 6 306 8 HOH HOH . I 3 HOH A 7 307 88 HOH HOH . I 3 HOH A 8 308 10 HOH HOH . I 3 HOH A 9 309 66 HOH HOH . I 3 HOH A 10 310 68 HOH HOH . I 3 HOH A 11 311 110 HOH HOH . I 3 HOH A 12 312 32 HOH HOH . I 3 HOH A 13 313 28 HOH HOH . I 3 HOH A 14 314 71 HOH HOH . I 3 HOH A 15 315 34 HOH HOH . I 3 HOH A 16 316 25 HOH HOH . I 3 HOH A 17 317 12 HOH HOH . I 3 HOH A 18 318 36 HOH HOH . I 3 HOH A 19 319 40 HOH HOH . I 3 HOH A 20 320 99 HOH HOH . I 3 HOH A 21 321 33 HOH HOH . I 3 HOH A 22 322 82 HOH HOH . I 3 HOH A 23 323 58 HOH HOH . I 3 HOH A 24 324 100 HOH HOH . I 3 HOH A 25 325 3 HOH HOH . I 3 HOH A 26 326 39 HOH HOH . I 3 HOH A 27 327 26 HOH HOH . I 3 HOH A 28 328 53 HOH HOH . I 3 HOH A 29 329 74 HOH HOH . I 3 HOH A 30 330 84 HOH HOH . I 3 HOH A 31 331 31 HOH HOH . I 3 HOH A 32 332 41 HOH HOH . I 3 HOH A 33 333 38 HOH HOH . I 3 HOH A 34 334 101 HOH HOH . I 3 HOH A 35 335 54 HOH HOH . I 3 HOH A 36 336 13 HOH HOH . I 3 HOH A 37 337 27 HOH HOH . I 3 HOH A 38 338 55 HOH HOH . I 3 HOH A 39 339 7 HOH HOH . I 3 HOH A 40 340 61 HOH HOH . I 3 HOH A 41 341 17 HOH HOH . I 3 HOH A 42 342 75 HOH HOH . I 3 HOH A 43 343 18 HOH HOH . J 3 HOH B 1 301 47 HOH HOH . J 3 HOH B 2 302 37 HOH HOH . J 3 HOH B 3 303 35 HOH HOH . J 3 HOH B 4 304 2 HOH HOH . J 3 HOH B 5 305 1 HOH HOH . J 3 HOH B 6 306 80 HOH HOH . J 3 HOH B 7 307 43 HOH HOH . J 3 HOH B 8 308 93 HOH HOH . J 3 HOH B 9 309 79 HOH HOH . J 3 HOH B 10 310 45 HOH HOH . J 3 HOH B 11 311 23 HOH HOH . J 3 HOH B 12 312 16 HOH HOH . J 3 HOH B 13 313 85 HOH HOH . J 3 HOH B 14 314 30 HOH HOH . J 3 HOH B 15 315 87 HOH HOH . J 3 HOH B 16 316 111 HOH HOH . J 3 HOH B 17 317 60 HOH HOH . J 3 HOH B 18 318 48 HOH HOH . J 3 HOH B 19 319 59 HOH HOH . J 3 HOH B 20 320 52 HOH HOH . J 3 HOH B 21 321 95 HOH HOH . J 3 HOH B 22 322 11 HOH HOH . J 3 HOH B 23 323 108 HOH HOH . J 3 HOH B 24 324 73 HOH HOH . J 3 HOH B 25 325 56 HOH HOH . J 3 HOH B 26 326 57 HOH HOH . J 3 HOH B 27 327 49 HOH HOH . J 3 HOH B 28 328 77 HOH HOH . K 3 HOH C 1 301 78 HOH HOH . K 3 HOH C 2 302 6 HOH HOH . K 3 HOH C 3 303 15 HOH HOH . K 3 HOH C 4 304 91 HOH HOH . K 3 HOH C 5 305 76 HOH HOH . K 3 HOH C 6 306 96 HOH HOH . K 3 HOH C 7 307 14 HOH HOH . K 3 HOH C 8 308 70 HOH HOH . K 3 HOH C 9 309 19 HOH HOH . K 3 HOH C 10 310 21 HOH HOH . K 3 HOH C 11 311 63 HOH HOH . K 3 HOH C 12 312 62 HOH HOH . K 3 HOH C 13 313 81 HOH HOH . K 3 HOH C 14 314 42 HOH HOH . K 3 HOH C 15 315 4 HOH HOH . K 3 HOH C 16 316 67 HOH HOH . K 3 HOH C 17 317 65 HOH HOH . K 3 HOH C 18 318 109 HOH HOH . K 3 HOH C 19 319 72 HOH HOH . K 3 HOH C 20 320 94 HOH HOH . K 3 HOH C 21 321 9 HOH HOH . K 3 HOH C 22 322 97 HOH HOH . K 3 HOH C 23 323 89 HOH HOH . K 3 HOH C 24 324 104 HOH HOH . L 3 HOH D 1 301 98 HOH HOH . L 3 HOH D 2 302 106 HOH HOH . L 3 HOH D 3 303 107 HOH HOH . L 3 HOH D 4 304 69 HOH HOH . L 3 HOH D 5 305 29 HOH HOH . L 3 HOH D 6 306 51 HOH HOH . L 3 HOH D 7 307 83 HOH HOH . L 3 HOH D 8 308 64 HOH HOH . L 3 HOH D 9 309 92 HOH HOH . L 3 HOH D 10 310 22 HOH HOH . L 3 HOH D 11 311 24 HOH HOH . L 3 HOH D 12 312 20 HOH HOH . L 3 HOH D 13 313 102 HOH HOH . L 3 HOH D 14 314 5 HOH HOH . L 3 HOH D 15 315 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 TJ4 . . . E 2 38.2 -26.906 -13.246 1 31.31 ? O3 TJ4 201 A 1 HETATM 2 C C9 TJ4 . . . E 2 37.518 -27.173 -14.289 1 28.07 ? C9 TJ4 201 A 1 HETATM 3 N N2 TJ4 . . . E 2 37.32 -28.464 -14.629 1 28.64 ? N2 TJ4 201 A 1 HETATM 4 N N1 TJ4 . . . E 2 37.033 -26.141 -15.016 1 27.39 ? N1 TJ4 201 A 1 HETATM 5 C C4 TJ4 . . . E 2 36.237 -26.352 -16.107 1 26.2 ? C4 TJ4 201 A 1 HETATM 6 C C5 TJ4 . . . E 2 35.712 -25.243 -16.909 1 27.59 ? C5 TJ4 201 A 1 HETATM 7 C C3 TJ4 . . . E 2 36.015 -27.712 -16.547 1 28.07 ? C3 TJ4 201 A 1 HETATM 8 C C6 TJ4 . . . E 2 35.191 -28.05 -17.786 1 30.36 ? C6 TJ4 201 A 1 HETATM 9 C C2 TJ4 . . . E 2 36.594 -28.754 -15.714 1 27.86 ? C2 TJ4 201 A 1 HETATM 10 C C1 TJ4 . . . E 2 36.394 -30.199 -16.004 1 33.97 ? C1 TJ4 201 A 1 HETATM 11 O O1 TJ4 . . . E 2 37.087 -30.849 -16.813 1 30.04 ? O1 TJ4 201 A 1 HETATM 12 O O2 TJ4 . . . E 2 35.476 -30.726 -15.391 1 38.98 ? O2 TJ4 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #