data_6W9D # _model_server_result.job_id U_L7x1RUve6RBtcyAR_58A _model_server_result.datetime_utc '2024-11-21 18:11:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w9d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":101}' # _entry.id 6W9D # _exptl.entry_id 6W9D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6W9D _cell.length_a 135.473 _cell.length_b 135.473 _cell.length_c 51.372 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W9D _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 ? trimeric 3 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,J,K,L,M 1 1 D,E,F,N,O,P,Q,R 2 1 G,H,I,S,T,U,V,W 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 L N N ? 5 M N N ? 5 N N N ? 5 Q N N ? 5 R N N ? 5 S N N ? 5 V N N ? 5 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 45 B CYS 570 1_555 J ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc2 B SG CYS 48 B CYS 573 1_555 J ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc3 B SG CYS 63 B CYS 588 1_555 K ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc4 B ND1 HIS 68 B HIS 593 1_555 J ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc5 B SG CYS 71 B CYS 596 1_555 J ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc6 B SG CYS 82 B CYS 607 1_555 K ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc7 B SG CYS 85 B CYS 610 1_555 K ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc8 E SG CYS 45 E CYS 570 1_555 O ZN ZN . E ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc9 E SG CYS 48 E CYS 573 1_555 O ZN ZN . E ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc10 E SG CYS 63 E CYS 588 1_555 P ZN ZN . E ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc11 E ND1 HIS 65 E HIS 590 1_555 P ZN ZN . E ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc12 E ND1 HIS 68 E HIS 593 1_555 O ZN ZN . E ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc13 E SG CYS 71 E CYS 596 1_555 O ZN ZN . E ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc14 E SG CYS 82 E CYS 607 1_555 P ZN ZN . E ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc15 E SG CYS 85 E CYS 610 1_555 P ZN ZN . E ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc16 H SG CYS 45 H CYS 570 1_555 T ZN ZN . H ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc17 H SG CYS 48 H CYS 573 1_555 T ZN ZN . H ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc18 H SG CYS 63 H CYS 588 1_555 U ZN ZN . H ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc19 H ND1 HIS 65 H HIS 590 1_555 U ZN ZN . H ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc20 H ND1 HIS 68 H HIS 593 1_555 T ZN ZN . H ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc21 H SG CYS 71 H CYS 596 1_555 T ZN ZN . H ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc22 H SG CYS 82 H CYS 607 1_555 U ZN ZN . H ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc23 H SG CYS 85 H CYS 610 1_555 U ZN ZN . H ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6W9D _atom_sites.fract_transf_matrix[1][1] 0.007382 _atom_sites.fract_transf_matrix[1][2] 0.004262 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008523 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019466 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 4 ZN B 1 701 1 ZN ZN . K 4 ZN B 1 702 2 ZN ZN . L 5 IOD B 1 703 2 IOD IOD . M 5 IOD C 1 101 1 IOD IOD . N 5 IOD D 1 201 5 IOD IOD . O 4 ZN E 1 701 3 ZN ZN . P 4 ZN E 1 702 4 ZN ZN . Q 5 IOD E 1 703 4 IOD IOD . R 5 IOD F 1 101 3 IOD IOD . S 5 IOD G 1 201 8 IOD IOD . T 4 ZN H 1 701 5 ZN ZN . U 4 ZN H 1 702 6 ZN ZN . V 5 IOD H 1 703 7 IOD IOD . W 5 IOD I 1 101 6 IOD IOD . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id W _atom_site.label_entity_id 5 _atom_site.Cartn_x 109.942 _atom_site.Cartn_y 88.242 _atom_site.Cartn_z 75.91 _atom_site.occupancy 0.57 _atom_site.B_iso_or_equiv 70.03 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 101 _atom_site.auth_asym_id I _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #