data_6W9E # _model_server_result.job_id SWIVV-9JXkn56boxJyjLJA _model_server_result.datetime_utc '2025-01-10 14:27:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w9e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 6W9E # _exptl.entry_id 6W9E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.415 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4-amino-2-{[(1S,2S,4R)-bicyclo[2.2.1]heptan-2-yl]amino}-1,3-thiazol-5-yl)(2-nitrophenyl)methanone _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6W9E _cell.length_a 173.34 _cell.length_b 173.34 _cell.length_c 97.368 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W9E _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 185 A TYR 185 1_555 A N TPO 186 A TPO 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C TPO 186 A TPO 186 1_555 A N ASN 187 A ASN 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C ASP 305 A ASP 305 1_555 A N SEP 306 A SEP 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 A C SEP 306 A SEP 306 1_555 A N ASP 307 A ASP 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C17 H18 N4 O3 S' _chem_comp.formula_weight 358.415 _chem_comp.id TO7 _chem_comp.mon_nstd_flag . _chem_comp.name (4-amino-2-{[(1S,2S,4R)-bicyclo[2.2.1]heptan-2-yl]amino}-1,3-thiazol-5-yl)(2-nitrophenyl)methanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MC180295 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 TO7 doub 328 n y C1 C3 TO7 sing 329 n y C2 C4 TO7 sing 330 n y C3 C5 TO7 doub 331 n y C4 C6 TO7 doub 332 n y C14 C17 TO7 sing 333 n n C14 C15 TO7 sing 334 n n C5 C6 TO7 sing 335 n y C5 C10 TO7 sing 336 n n N1 C8 TO7 sing 337 n y N1 C9 TO7 doub 338 n y N2 C8 TO7 sing 339 n n N3 C9 TO7 sing 340 n n N3 C17 TO7 sing 341 n n C8 C7 TO7 doub 342 n y C9 S1 TO7 sing 343 n y C6 N4 TO7 sing 344 n n C7 S1 TO7 sing 345 n y C7 C10 TO7 sing 346 n n C17 C16 TO7 sing 347 n n C10 O2 TO7 doub 348 n n C15 C11 TO7 sing 349 n n C15 C13 TO7 sing 350 n n C11 C12 TO7 sing 351 n n N4 O3 TO7 doub 352 n n N4 O1 TO7 sing 353 n n C16 C12 TO7 sing 354 n n C16 C13 TO7 sing 355 n n C1 H1 TO7 sing 356 n n C4 H2 TO7 sing 357 n n C3 H3 TO7 sing 358 n n C2 H4 TO7 sing 359 n n N2 H5 TO7 sing 360 n n N2 H6 TO7 sing 361 n n N3 H7 TO7 sing 362 n n C17 H8 TO7 sing 363 n n C16 H9 TO7 sing 364 n n C13 H10 TO7 sing 365 n n C13 H11 TO7 sing 366 n n C12 H12 TO7 sing 367 n n C12 H13 TO7 sing 368 n n C14 H14 TO7 sing 369 n n C14 H15 TO7 sing 370 n n C15 H16 TO7 sing 371 n n C11 H17 TO7 sing 372 n n C11 H18 TO7 sing 373 n n # _atom_sites.entry_id 6W9E _atom_sites.fract_transf_matrix[1][1] 0.005769 _atom_sites.fract_transf_matrix[1][2] 0.003331 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006661 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01027 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 TO7 A 1 401 1 TO7 295 . D 3 TO7 A 1 402 2 TO7 295 . E 4 TOJ A 1 403 1 TOJ 296 . F 4 TOJ A 1 404 2 TOJ 296 . G 5 PO4 B 1 301 1 PO4 PO4 . H 6 HOH A 1 501 3 HOH HOH . H 6 HOH A 2 502 10 HOH HOH . H 6 HOH A 3 503 40 HOH HOH . H 6 HOH A 4 504 39 HOH HOH . H 6 HOH A 5 505 1 HOH HOH . H 6 HOH A 6 506 6 HOH HOH . H 6 HOH A 7 507 17 HOH HOH . H 6 HOH A 8 508 31 HOH HOH . H 6 HOH A 9 509 8 HOH HOH . H 6 HOH A 10 510 19 HOH HOH . H 6 HOH A 11 511 7 HOH HOH . H 6 HOH A 12 512 33 HOH HOH . H 6 HOH A 13 513 34 HOH HOH . I 6 HOH B 1 401 13 HOH HOH . I 6 HOH B 2 402 25 HOH HOH . I 6 HOH B 3 403 22 HOH HOH . I 6 HOH B 4 404 38 HOH HOH . I 6 HOH B 5 405 11 HOH HOH . I 6 HOH B 6 406 29 HOH HOH . I 6 HOH B 7 407 20 HOH HOH . I 6 HOH B 8 408 23 HOH HOH . I 6 HOH B 9 409 14 HOH HOH . I 6 HOH B 10 410 24 HOH HOH . I 6 HOH B 11 411 35 HOH HOH . I 6 HOH B 12 412 37 HOH HOH . I 6 HOH B 13 413 30 HOH HOH . I 6 HOH B 14 414 28 HOH HOH . I 6 HOH B 15 415 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TO7 . B . D 3 51.608 -18.133 -11.523 0.25 106.85 ? C1 TO7 402 A 1 HETATM 2 C C5 TO7 . B . D 3 51.705 -16.331 -13.107 0.25 97.85 ? C5 TO7 402 A 1 HETATM 3 C C4 TO7 . B . D 3 50.112 -18.11 -13.4 0.25 102.41 ? C4 TO7 402 A 1 HETATM 4 C C3 TO7 . B . D 3 52.169 -16.936 -11.953 0.25 101.61 ? C3 TO7 402 A 1 HETATM 5 C C2 TO7 . B . D 3 50.577 -18.72 -12.247 0.25 105.6 ? C2 TO7 402 A 1 HETATM 6 C C6 TO7 . B . D 3 50.68 -16.917 -13.824 0.25 101.98 ? C6 TO7 402 A 1 HETATM 7 C C7 TO7 . B . D 3 53.78 -14.872 -13.661 0.25 87.6 ? C7 TO7 402 A 1 HETATM 8 C C8 TO7 . B . D 3 54.568 -13.629 -13.778 0.25 86.63 ? C8 TO7 402 A 1 HETATM 9 O O1 TO7 . B . D 3 48.829 -16.245 -15.231 0.25 111.36 ? O1 TO7 402 A 1 HETATM 10 O O3 TO7 . B . D 3 51.115 -15.711 -15.869 0.25 112.29 ? O3 TO7 402 A 1 HETATM 11 O O2 TO7 . B . D 3 51.594 -14.084 -13.829 0.25 90.91 ? O2 TO7 402 A 1 HETATM 12 C C10 TO7 . B . D 3 52.309 -15.036 -13.559 0.25 92.61 ? C10 TO7 402 A 1 HETATM 13 N N4 TO7 . B . D 3 50.207 -16.295 -14.981 0.25 108.61 ? N4 TO7 402 A 1 HETATM 14 S S1 TO7 . B . D 3 54.916 -16.163 -13.657 0.25 91.19 ? S1 TO7 402 A 1 HETATM 15 C C9 TO7 . B . D 3 56.242 -15.047 -13.803 0.25 86.82 ? C9 TO7 402 A 1 HETATM 16 N N1 TO7 . B . D 3 55.923 -13.73 -13.85 0.25 86.46 ? N1 TO7 402 A 1 HETATM 17 N N2 TO7 . B . D 3 53.888 -12.355 -13.798 0.25 88.05 ? N2 TO7 402 A 1 HETATM 18 N N3 TO7 . B . D 3 57.515 -15.474 -13.841 0.25 87.44 ? N3 TO7 402 A 1 HETATM 19 C C17 TO7 . B . D 3 57.767 -16.885 -13.68 0.25 87.04 ? C17 TO7 402 A 1 HETATM 20 C C16 TO7 . B . D 3 57.978 -17.246 -12.225 0.25 87.09 ? C16 TO7 402 A 1 HETATM 21 C C13 TO7 . B . D 3 59.474 -17.226 -12.072 0.25 87.14 ? C13 TO7 402 A 1 HETATM 22 C C12 TO7 . B . D 3 57.652 -18.706 -12.089 0.25 87.52 ? C12 TO7 402 A 1 HETATM 23 C C14 TO7 . B . D 3 59.049 -17.381 -14.348 0.25 85.92 ? C14 TO7 402 A 1 HETATM 24 C C15 TO7 . B . D 3 59.686 -18.172 -13.225 0.25 86.16 ? C15 TO7 402 A 1 HETATM 25 C C11 TO7 . B . D 3 58.789 -19.36 -12.881 0.25 86.42 ? C11 TO7 402 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #