data_6W9E # _model_server_result.job_id 6SPuYxfkW9pk-uBsdVasMw _model_server_result.datetime_utc '2025-01-10 13:51:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w9e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 6W9E # _exptl.entry_id 6W9E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.415 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4-amino-2-{[(1R,2R,4S)-bicyclo[2.2.1]heptan-2-yl]amino}-1,3-thiazol-5-yl)(2-nitrophenyl)methanone _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6W9E _cell.length_a 173.34 _cell.length_b 173.34 _cell.length_c 97.368 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W9E _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 185 A TYR 185 1_555 A N TPO 186 A TPO 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C TPO 186 A TPO 186 1_555 A N ASN 187 A ASN 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C ASP 305 A ASP 305 1_555 A N SEP 306 A SEP 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 A C SEP 306 A SEP 306 1_555 A N ASP 307 A ASP 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C17 H18 N4 O3 S' _chem_comp.formula_weight 358.415 _chem_comp.id TOJ _chem_comp.mon_nstd_flag . _chem_comp.name (4-amino-2-{[(1R,2R,4S)-bicyclo[2.2.1]heptan-2-yl]amino}-1,3-thiazol-5-yl)(2-nitrophenyl)methanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 N4 TOJ sing 374 n n O3 N4 TOJ doub 375 n n N4 C6 TOJ sing 376 n n C16 C17 TOJ sing 377 n n C16 C12 TOJ sing 378 n n N3 C17 TOJ sing 379 n n N3 C9 TOJ sing 380 n n C17 C14 TOJ sing 381 n n N1 C9 TOJ doub 382 n y N1 C8 TOJ sing 383 n y C6 C4 TOJ doub 384 n y C6 C5 TOJ sing 385 n y C9 S1 TOJ sing 386 n y N2 C8 TOJ sing 387 n n C8 C7 TOJ doub 388 n y O2 C10 TOJ doub 389 n n S1 C7 TOJ sing 390 n y C7 C10 TOJ sing 391 n n C10 C5 TOJ sing 392 n n C4 C2 TOJ sing 393 n y C5 C3 TOJ doub 394 n y C11 C12 TOJ sing 395 n n C11 C15 TOJ sing 396 n n C12 C13 TOJ sing 397 n n C15 C14 TOJ sing 398 n n C14 C13 TOJ sing 399 n n C2 C1 TOJ doub 400 n y C3 C1 TOJ sing 401 n y C1 H1 TOJ sing 402 n n C3 H2 TOJ sing 403 n n C4 H3 TOJ sing 404 n n C11 H4 TOJ sing 405 n n C11 H5 TOJ sing 406 n n C12 H6 TOJ sing 407 n n C2 H7 TOJ sing 408 n n N2 H8 TOJ sing 409 n n N2 H9 TOJ sing 410 n n N3 H10 TOJ sing 411 n n C17 H11 TOJ sing 412 n n C16 H12 TOJ sing 413 n n C16 H13 TOJ sing 414 n n C14 H14 TOJ sing 415 n n C13 H15 TOJ sing 416 n n C13 H16 TOJ sing 417 n n C15 H17 TOJ sing 418 n n C15 H18 TOJ sing 419 n n # _atom_sites.entry_id 6W9E _atom_sites.fract_transf_matrix[1][1] 0.005769 _atom_sites.fract_transf_matrix[1][2] 0.003331 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006661 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01027 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 TO7 A 1 401 1 TO7 295 . D 3 TO7 A 1 402 2 TO7 295 . E 4 TOJ A 1 403 1 TOJ 296 . F 4 TOJ A 1 404 2 TOJ 296 . G 5 PO4 B 1 301 1 PO4 PO4 . H 6 HOH A 1 501 3 HOH HOH . H 6 HOH A 2 502 10 HOH HOH . H 6 HOH A 3 503 40 HOH HOH . H 6 HOH A 4 504 39 HOH HOH . H 6 HOH A 5 505 1 HOH HOH . H 6 HOH A 6 506 6 HOH HOH . H 6 HOH A 7 507 17 HOH HOH . H 6 HOH A 8 508 31 HOH HOH . H 6 HOH A 9 509 8 HOH HOH . H 6 HOH A 10 510 19 HOH HOH . H 6 HOH A 11 511 7 HOH HOH . H 6 HOH A 12 512 33 HOH HOH . H 6 HOH A 13 513 34 HOH HOH . I 6 HOH B 1 401 13 HOH HOH . I 6 HOH B 2 402 25 HOH HOH . I 6 HOH B 3 403 22 HOH HOH . I 6 HOH B 4 404 38 HOH HOH . I 6 HOH B 5 405 11 HOH HOH . I 6 HOH B 6 406 29 HOH HOH . I 6 HOH B 7 407 20 HOH HOH . I 6 HOH B 8 408 23 HOH HOH . I 6 HOH B 9 409 14 HOH HOH . I 6 HOH B 10 410 24 HOH HOH . I 6 HOH B 11 411 35 HOH HOH . I 6 HOH B 12 412 37 HOH HOH . I 6 HOH B 13 413 30 HOH HOH . I 6 HOH B 14 414 28 HOH HOH . I 6 HOH B 15 415 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TOJ . C . E 4 51.429 -18.081 -11.422 0.25 109.34 ? C1 TOJ 403 A 1 HETATM 2 O O2 TOJ . C . E 4 51.697 -14.064 -13.682 0.25 93.35 ? O2 TOJ 403 A 1 HETATM 3 C C3 TOJ . C . E 4 52.045 -16.899 -11.82 0.25 104.29 ? C3 TOJ 403 A 1 HETATM 4 C C4 TOJ . C . E 4 50.165 -18.113 -13.463 0.25 103.77 ? C4 TOJ 403 A 1 HETATM 5 C C5 TOJ . C . E 4 51.725 -16.33 -13.04 0.25 100.12 ? C5 TOJ 403 A 1 HETATM 6 C C6 TOJ . C . E 4 50.785 -16.934 -13.852 0.25 103.07 ? C6 TOJ 403 A 1 HETATM 7 C C7 TOJ . C . E 4 53.861 -14.932 -13.621 0.25 91.83 ? C7 TOJ 403 A 1 HETATM 8 C C8 TOJ . C . E 4 54.646 -13.692 -13.778 0.25 91.3 ? C8 TOJ 403 A 1 HETATM 9 C C9 TOJ . C . E 4 56.347 -15.125 -13.844 0.25 93.21 ? C9 TOJ 403 A 1 HETATM 10 C C11 TOJ . C . E 4 59.421 -19.205 -12.923 0.25 97.29 ? C11 TOJ 403 A 1 HETATM 11 C C12 TOJ . C . E 4 57.966 -18.776 -12.868 0.25 97.65 ? C12 TOJ 403 A 1 HETATM 12 C C10 TOJ . C . E 4 52.383 -15.052 -13.467 0.25 95.64 ? C10 TOJ 403 A 1 HETATM 13 N N4 TOJ . C . E 4 50.464 -16.34 -15.073 0.25 108.51 ? N4 TOJ 403 A 1 HETATM 14 O O3 TOJ . C . E 4 49.13 -16.219 -15.465 0.25 111.06 ? O3 TOJ 403 A 1 HETATM 15 O O1 TOJ . C . E 4 51.484 -15.852 -15.884 0.25 110.88 ? O1 TOJ 403 A 1 HETATM 16 C C2 TOJ . C . E 4 50.488 -18.69 -12.244 0.25 107.39 ? C2 TOJ 403 A 1 HETATM 17 S S1 TOJ . C . E 4 55.011 -16.229 -13.644 0.25 96.28 ? S1 TOJ 403 A 1 HETATM 18 N N1 TOJ . C . E 4 55.994 -13.812 -13.896 0.25 91.68 ? N1 TOJ 403 A 1 HETATM 19 N N2 TOJ . C . E 4 53.99 -12.399 -13.793 0.25 92.82 ? N2 TOJ 403 A 1 HETATM 20 N N3 TOJ . C . E 4 57.675 -15.395 -13.951 0.25 95.87 ? N3 TOJ 403 A 1 HETATM 21 C C17 TOJ . C . E 4 58.398 -16.663 -13.905 0.25 96.98 ? C17 TOJ 403 A 1 HETATM 22 C C16 TOJ . C . E 4 57.614 -17.962 -14.101 0.25 98.33 ? C16 TOJ 403 A 1 HETATM 23 C C14 TOJ . C . E 4 59.028 -16.89 -12.549 0.25 97.39 ? C14 TOJ 403 A 1 HETATM 24 C C13 TOJ . C . E 4 57.988 -17.693 -11.825 0.25 97.75 ? C13 TOJ 403 A 1 HETATM 25 C C15 TOJ . C . E 4 60.161 -17.888 -12.696 0.25 97.04 ? C15 TOJ 403 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 387 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 25 #