data_6W9E # _model_server_result.job_id TPrBbrYuxuB4li_BVq_Fyg _model_server_result.datetime_utc '2025-01-10 14:21:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w9e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 6W9E # _exptl.entry_id 6W9E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.415 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4-amino-2-{[(1R,2R,4S)-bicyclo[2.2.1]heptan-2-yl]amino}-1,3-thiazol-5-yl)(2-nitrophenyl)methanone _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6W9E _cell.length_a 173.34 _cell.length_b 173.34 _cell.length_c 97.368 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W9E _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 185 A TYR 185 1_555 A N TPO 186 A TPO 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C TPO 186 A TPO 186 1_555 A N ASN 187 A ASN 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C ASP 305 A ASP 305 1_555 A N SEP 306 A SEP 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 A C SEP 306 A SEP 306 1_555 A N ASP 307 A ASP 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C17 H18 N4 O3 S' _chem_comp.formula_weight 358.415 _chem_comp.id TOJ _chem_comp.mon_nstd_flag . _chem_comp.name (4-amino-2-{[(1R,2R,4S)-bicyclo[2.2.1]heptan-2-yl]amino}-1,3-thiazol-5-yl)(2-nitrophenyl)methanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 N4 TOJ sing 374 n n O3 N4 TOJ doub 375 n n N4 C6 TOJ sing 376 n n C16 C17 TOJ sing 377 n n C16 C12 TOJ sing 378 n n N3 C17 TOJ sing 379 n n N3 C9 TOJ sing 380 n n C17 C14 TOJ sing 381 n n N1 C9 TOJ doub 382 n y N1 C8 TOJ sing 383 n y C6 C4 TOJ doub 384 n y C6 C5 TOJ sing 385 n y C9 S1 TOJ sing 386 n y N2 C8 TOJ sing 387 n n C8 C7 TOJ doub 388 n y O2 C10 TOJ doub 389 n n S1 C7 TOJ sing 390 n y C7 C10 TOJ sing 391 n n C10 C5 TOJ sing 392 n n C4 C2 TOJ sing 393 n y C5 C3 TOJ doub 394 n y C11 C12 TOJ sing 395 n n C11 C15 TOJ sing 396 n n C12 C13 TOJ sing 397 n n C15 C14 TOJ sing 398 n n C14 C13 TOJ sing 399 n n C2 C1 TOJ doub 400 n y C3 C1 TOJ sing 401 n y C1 H1 TOJ sing 402 n n C3 H2 TOJ sing 403 n n C4 H3 TOJ sing 404 n n C11 H4 TOJ sing 405 n n C11 H5 TOJ sing 406 n n C12 H6 TOJ sing 407 n n C2 H7 TOJ sing 408 n n N2 H8 TOJ sing 409 n n N2 H9 TOJ sing 410 n n N3 H10 TOJ sing 411 n n C17 H11 TOJ sing 412 n n C16 H12 TOJ sing 413 n n C16 H13 TOJ sing 414 n n C14 H14 TOJ sing 415 n n C13 H15 TOJ sing 416 n n C13 H16 TOJ sing 417 n n C15 H17 TOJ sing 418 n n C15 H18 TOJ sing 419 n n # _atom_sites.entry_id 6W9E _atom_sites.fract_transf_matrix[1][1] 0.005769 _atom_sites.fract_transf_matrix[1][2] 0.003331 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006661 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01027 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 TO7 A 1 401 1 TO7 295 . D 3 TO7 A 1 402 2 TO7 295 . E 4 TOJ A 1 403 1 TOJ 296 . F 4 TOJ A 1 404 2 TOJ 296 . G 5 PO4 B 1 301 1 PO4 PO4 . H 6 HOH A 1 501 3 HOH HOH . H 6 HOH A 2 502 10 HOH HOH . H 6 HOH A 3 503 40 HOH HOH . H 6 HOH A 4 504 39 HOH HOH . H 6 HOH A 5 505 1 HOH HOH . H 6 HOH A 6 506 6 HOH HOH . H 6 HOH A 7 507 17 HOH HOH . H 6 HOH A 8 508 31 HOH HOH . H 6 HOH A 9 509 8 HOH HOH . H 6 HOH A 10 510 19 HOH HOH . H 6 HOH A 11 511 7 HOH HOH . H 6 HOH A 12 512 33 HOH HOH . H 6 HOH A 13 513 34 HOH HOH . I 6 HOH B 1 401 13 HOH HOH . I 6 HOH B 2 402 25 HOH HOH . I 6 HOH B 3 403 22 HOH HOH . I 6 HOH B 4 404 38 HOH HOH . I 6 HOH B 5 405 11 HOH HOH . I 6 HOH B 6 406 29 HOH HOH . I 6 HOH B 7 407 20 HOH HOH . I 6 HOH B 8 408 23 HOH HOH . I 6 HOH B 9 409 14 HOH HOH . I 6 HOH B 10 410 24 HOH HOH . I 6 HOH B 11 411 35 HOH HOH . I 6 HOH B 12 412 37 HOH HOH . I 6 HOH B 13 413 30 HOH HOH . I 6 HOH B 14 414 28 HOH HOH . I 6 HOH B 15 415 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TOJ . D . F 4 49.774 -16.21 -16.132 0.25 108.59 ? C1 TOJ 404 A 1 HETATM 2 O O2 TOJ . D . F 4 51.743 -13.924 -13.013 0.25 94.39 ? O2 TOJ 404 A 1 HETATM 3 C C3 TOJ . D . F 4 50.696 -15.41 -15.488 0.25 107.2 ? C3 TOJ 404 A 1 HETATM 4 C C4 TOJ . D . F 4 49.908 -17.81 -14.363 0.25 107.52 ? C4 TOJ 404 A 1 HETATM 5 C C5 TOJ . D . F 4 51.247 -15.802 -14.29 0.25 103.22 ? C5 TOJ 404 A 1 HETATM 6 C C6 TOJ . D . F 4 50.833 -16.995 -13.726 0.25 104.03 ? C6 TOJ 404 A 1 HETATM 7 C C7 TOJ . D . F 4 53.698 -14.861 -13.738 0.25 92.61 ? C7 TOJ 404 A 1 HETATM 8 C C8 TOJ . D . F 4 54.566 -13.669 -13.823 0.25 92.02 ? C8 TOJ 404 A 1 HETATM 9 C C9 TOJ . D . F 4 56.166 -15.193 -13.813 0.25 93.2 ? C9 TOJ 404 A 1 HETATM 10 C C11 TOJ . D . F 4 59.337 -19.312 -13.24 0.25 95.1 ? C11 TOJ 404 A 1 HETATM 11 C C12 TOJ . D . F 4 58.158 -18.75 -12.454 0.25 95.41 ? C12 TOJ 404 A 1 HETATM 12 C C10 TOJ . D . F 4 52.214 -14.849 -13.648 0.25 97.41 ? C10 TOJ 404 A 1 HETATM 13 N N4 TOJ . D . F 4 51.354 -17.411 -12.516 0.25 104.8 ? N4 TOJ 404 A 1 HETATM 14 O O3 TOJ . D . F 4 52.429 -16.717 -11.971 0.25 104.54 ? O3 TOJ 404 A 1 HETATM 15 O O1 TOJ . D . F 4 50.789 -18.516 -11.885 0.25 113.02 ? O1 TOJ 404 A 1 HETATM 16 C C2 TOJ . D . F 4 49.369 -17.415 -15.576 0.25 110.87 ? C2 TOJ 404 A 1 HETATM 17 S S1 TOJ . D . F 4 54.76 -16.224 -13.706 0.25 96.97 ? S1 TOJ 404 A 1 HETATM 18 N N1 TOJ . D . F 4 55.906 -13.863 -13.874 0.25 91.98 ? N1 TOJ 404 A 1 HETATM 19 N N2 TOJ . D . F 4 53.999 -12.336 -13.864 0.25 93.88 ? N2 TOJ 404 A 1 HETATM 20 N N3 TOJ . D . F 4 57.472 -15.549 -13.866 0.25 94.81 ? N3 TOJ 404 A 1 HETATM 21 C C17 TOJ . D . F 4 58.04 -16.887 -13.918 0.25 95.44 ? C17 TOJ 404 A 1 HETATM 22 C C16 TOJ . D . F 4 57.192 -18.053 -13.402 0.25 95.61 ? C16 TOJ 404 A 1 HETATM 23 C C14 TOJ . D . F 4 59.277 -16.971 -13.04 0.25 94.9 ? C14 TOJ 404 A 1 HETATM 24 C C13 TOJ . D . F 4 58.765 -17.56 -11.752 0.25 96.04 ? C13 TOJ 404 A 1 HETATM 25 C C15 TOJ . D . F 4 60.165 -18.07 -13.572 0.25 94.9 ? C15 TOJ 404 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 48 _model_server_stats.query_time_ms 777 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 25 #