data_6W9K # _model_server_result.job_id x1E3JitvUqYRffPp64Zilg _model_server_result.datetime_utc '2024-10-13 18:21:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w9k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 6W9K # _exptl.entry_id 6W9K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6W9K _cell.length_a 71.052 _cell.length_b 96.089 _cell.length_c 108.025 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W9K _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6W9K _atom_sites.fract_transf_matrix[1][1] 0.014074 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010407 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009257 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 TUA A 1 301 249 TUA PRE . D 4 GOL A 1 302 1 GOL GOL . E 5 HOH A 1 401 75 HOH HOH . E 5 HOH A 2 402 142 HOH HOH . E 5 HOH A 3 403 147 HOH HOH . E 5 HOH A 4 404 116 HOH HOH . E 5 HOH A 5 405 80 HOH HOH . E 5 HOH A 6 406 110 HOH HOH . E 5 HOH A 7 407 102 HOH HOH . E 5 HOH A 8 408 32 HOH HOH . E 5 HOH A 9 409 60 HOH HOH . E 5 HOH A 10 410 44 HOH HOH . E 5 HOH A 11 411 40 HOH HOH . E 5 HOH A 12 412 88 HOH HOH . E 5 HOH A 13 413 50 HOH HOH . E 5 HOH A 14 414 9 HOH HOH . E 5 HOH A 15 415 35 HOH HOH . E 5 HOH A 16 416 30 HOH HOH . E 5 HOH A 17 417 67 HOH HOH . E 5 HOH A 18 418 21 HOH HOH . E 5 HOH A 19 419 29 HOH HOH . E 5 HOH A 20 420 77 HOH HOH . E 5 HOH A 21 421 36 HOH HOH . E 5 HOH A 22 422 5 HOH HOH . E 5 HOH A 23 423 31 HOH HOH . E 5 HOH A 24 424 136 HOH HOH . E 5 HOH A 25 425 109 HOH HOH . E 5 HOH A 26 426 63 HOH HOH . E 5 HOH A 27 427 46 HOH HOH . E 5 HOH A 28 428 62 HOH HOH . E 5 HOH A 29 429 114 HOH HOH . E 5 HOH A 30 430 45 HOH HOH . E 5 HOH A 31 431 10 HOH HOH . E 5 HOH A 32 432 12 HOH HOH . E 5 HOH A 33 433 56 HOH HOH . E 5 HOH A 34 434 11 HOH HOH . E 5 HOH A 35 435 19 HOH HOH . E 5 HOH A 36 436 17 HOH HOH . E 5 HOH A 37 437 4 HOH HOH . E 5 HOH A 38 438 100 HOH HOH . E 5 HOH A 39 439 82 HOH HOH . E 5 HOH A 40 440 65 HOH HOH . E 5 HOH A 41 441 8 HOH HOH . E 5 HOH A 42 442 2 HOH HOH . E 5 HOH A 43 443 3 HOH HOH . E 5 HOH A 44 444 101 HOH HOH . E 5 HOH A 45 445 151 HOH HOH . E 5 HOH A 46 446 94 HOH HOH . E 5 HOH A 47 447 18 HOH HOH . E 5 HOH A 48 448 108 HOH HOH . E 5 HOH A 49 449 24 HOH HOH . E 5 HOH A 50 450 98 HOH HOH . E 5 HOH A 51 451 22 HOH HOH . E 5 HOH A 52 452 111 HOH HOH . E 5 HOH A 53 453 1 HOH HOH . E 5 HOH A 54 454 7 HOH HOH . E 5 HOH A 55 455 6 HOH HOH . E 5 HOH A 56 456 121 HOH HOH . E 5 HOH A 57 457 49 HOH HOH . E 5 HOH A 58 458 13 HOH HOH . E 5 HOH A 59 459 34 HOH HOH . E 5 HOH A 60 460 39 HOH HOH . E 5 HOH A 61 461 28 HOH HOH . E 5 HOH A 62 462 64 HOH HOH . E 5 HOH A 63 463 25 HOH HOH . E 5 HOH A 64 464 33 HOH HOH . E 5 HOH A 65 465 16 HOH HOH . E 5 HOH A 66 466 93 HOH HOH . E 5 HOH A 67 467 144 HOH HOH . E 5 HOH A 68 468 81 HOH HOH . E 5 HOH A 69 469 90 HOH HOH . E 5 HOH A 70 470 120 HOH HOH . E 5 HOH A 71 471 66 HOH HOH . E 5 HOH A 72 472 27 HOH HOH . E 5 HOH A 73 473 74 HOH HOH . E 5 HOH A 74 474 48 HOH HOH . E 5 HOH A 75 475 20 HOH HOH . E 5 HOH A 76 476 68 HOH HOH . E 5 HOH A 77 477 128 HOH HOH . E 5 HOH A 78 478 83 HOH HOH . E 5 HOH A 79 479 146 HOH HOH . E 5 HOH A 80 480 14 HOH HOH . E 5 HOH A 81 481 23 HOH HOH . E 5 HOH A 82 482 113 HOH HOH . E 5 HOH A 83 483 105 HOH HOH . E 5 HOH A 84 484 42 HOH HOH . E 5 HOH A 85 485 57 HOH HOH . E 5 HOH A 86 486 47 HOH HOH . E 5 HOH A 87 487 61 HOH HOH . E 5 HOH A 88 488 71 HOH HOH . E 5 HOH A 89 489 41 HOH HOH . E 5 HOH A 90 490 37 HOH HOH . E 5 HOH A 91 491 73 HOH HOH . E 5 HOH A 92 492 84 HOH HOH . E 5 HOH A 93 493 76 HOH HOH . E 5 HOH A 94 494 126 HOH HOH . E 5 HOH A 95 495 104 HOH HOH . E 5 HOH A 96 496 89 HOH HOH . E 5 HOH A 97 497 59 HOH HOH . E 5 HOH A 98 498 150 HOH HOH . E 5 HOH A 99 499 123 HOH HOH . E 5 HOH A 100 500 145 HOH HOH . E 5 HOH A 101 501 119 HOH HOH . E 5 HOH A 102 502 79 HOH HOH . E 5 HOH A 103 503 135 HOH HOH . E 5 HOH A 104 504 54 HOH HOH . E 5 HOH A 105 505 58 HOH HOH . E 5 HOH A 106 506 70 HOH HOH . E 5 HOH A 107 507 141 HOH HOH . E 5 HOH A 108 508 132 HOH HOH . E 5 HOH A 109 509 97 HOH HOH . E 5 HOH A 110 510 149 HOH HOH . E 5 HOH A 111 511 15 HOH HOH . E 5 HOH A 112 512 115 HOH HOH . E 5 HOH A 113 513 99 HOH HOH . E 5 HOH A 114 514 124 HOH HOH . E 5 HOH A 115 515 153 HOH HOH . E 5 HOH A 116 516 43 HOH HOH . E 5 HOH A 117 517 53 HOH HOH . E 5 HOH A 118 518 122 HOH HOH . E 5 HOH A 119 519 112 HOH HOH . E 5 HOH A 120 520 92 HOH HOH . E 5 HOH A 121 521 131 HOH HOH . E 5 HOH A 122 522 96 HOH HOH . E 5 HOH A 123 523 106 HOH HOH . E 5 HOH A 124 524 91 HOH HOH . E 5 HOH A 125 525 86 HOH HOH . E 5 HOH A 126 526 154 HOH HOH . E 5 HOH A 127 527 95 HOH HOH . E 5 HOH A 128 528 85 HOH HOH . E 5 HOH A 129 529 130 HOH HOH . E 5 HOH A 130 530 133 HOH HOH . E 5 HOH A 131 531 51 HOH HOH . E 5 HOH A 132 532 87 HOH HOH . E 5 HOH A 133 533 143 HOH HOH . E 5 HOH A 134 534 107 HOH HOH . E 5 HOH A 135 535 155 HOH HOH . F 5 HOH B 1 201 38 HOH HOH . F 5 HOH B 2 202 103 HOH HOH . F 5 HOH B 3 203 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -9.346 -20.288 15.09 1 59.86 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . D 4 -10.236 -20.983 15.898 1 62.48 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . D 4 -8.705 -21.31 14.148 1 51.36 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . D 4 -8.51 -20.769 12.91 1 37.79 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . D 4 -7.385 -21.69 14.815 1 45.49 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . D 4 -6.914 -22.855 14.179 1 33.2 ? O3 GOL 302 A 1 HETATM 7 H H11 GOL . . . D 4 -8.651 -19.841 15.599 1 71.83 ? H11 GOL 302 A 1 HETATM 8 H H12 GOL . . . D 4 -9.779 -19.595 14.567 1 71.83 ? H12 GOL 302 A 1 HETATM 9 H HO1 GOL . . . D 4 -10.399 -20.481 16.566 1 74.98 ? HO1 GOL 302 A 1 HETATM 10 H H2 GOL . . . D 4 -9.272 -22.089 14.036 1 61.63 ? H2 GOL 302 A 1 HETATM 11 H HO2 GOL . . . D 4 -8.156 -19.996 13.016 1 45.35 ? HO2 GOL 302 A 1 HETATM 12 H H31 GOL . . . D 4 -6.774 -20.941 14.745 1 54.59 ? H31 GOL 302 A 1 HETATM 13 H H32 GOL . . . D 4 -7.539 -21.807 15.766 1 54.59 ? H32 GOL 302 A 1 HETATM 14 H HO3 GOL . . . D 4 -6.081 -22.74 14.043 1 39.84 ? HO3 GOL 302 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #