data_6W9M # _model_server_result.job_id 6czICvzCswnXglPaDIDp1g _model_server_result.datetime_utc '2024-10-13 18:20:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w9m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6W9M # _exptl.entry_id 6W9M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.455 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description vamorolone _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.394 _cell.angle_gamma 90 _cell.entry_id 6W9M _cell.length_a 87.065 _cell.length_b 52.854 _cell.length_c 69.646 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W9M _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H28 O4' _chem_comp.formula_weight 356.455 _chem_comp.id TUV _chem_comp.mon_nstd_flag . _chem_comp.name vamorolone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (8alpha,14beta,16alpha,17alpha)-17,21-dihydroxy-16-methylpregna-1,4,9(11)-triene-3,20-dione # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C16 TUV sing 347 n n C16 C15 TUV sing 348 n n C16 C17 TUV sing 349 n n C15 C14 TUV sing 350 n n O03 C17 TUV sing 351 n n C07 C06 TUV sing 352 n n C07 C08 TUV sing 353 n n C17 C20 TUV sing 354 n n C17 C13 TUV sing 355 n n O04 C20 TUV doub 356 n n C14 C08 TUV sing 357 n n C14 C13 TUV sing 358 n n C20 C21 TUV sing 359 n n C06 C05 TUV sing 360 n n C08 C09 TUV sing 361 n n C13 C18 TUV sing 362 n n C13 C12 TUV sing 363 n n C21 O05 TUV sing 364 n n C05 C04 TUV doub 365 n n C05 C10 TUV sing 366 n n C12 C11 TUV sing 367 n n C09 C11 TUV doub 368 n n C09 C10 TUV sing 369 n n C04 C03 TUV sing 370 n n C10 C19 TUV sing 371 n n C10 C01 TUV sing 372 n n C03 O01 TUV doub 373 n n C03 C02 TUV sing 374 n n C01 C02 TUV doub 375 n n C15 H1 TUV sing 376 n n C15 H2 TUV sing 377 n n C21 H3 TUV sing 378 n n C21 H4 TUV sing 379 n n C22 H5 TUV sing 380 n n C22 H6 TUV sing 381 n n C22 H7 TUV sing 382 n n C01 H8 TUV sing 383 n n C02 H9 TUV sing 384 n n C04 H10 TUV sing 385 n n C06 H11 TUV sing 386 n n C06 H12 TUV sing 387 n n C07 H13 TUV sing 388 n n C07 H14 TUV sing 389 n n C08 H15 TUV sing 390 n n C11 H17 TUV sing 391 n n C12 H19 TUV sing 392 n n C12 H20 TUV sing 393 n n C14 H21 TUV sing 394 n n C16 H22 TUV sing 395 n n C18 H23 TUV sing 396 n n C18 H24 TUV sing 397 n n C18 H25 TUV sing 398 n n C19 H26 TUV sing 399 n n C19 H27 TUV sing 400 n n C19 H28 TUV sing 401 n n O03 H29 TUV sing 402 n n O05 H30 TUV sing 403 n n # _atom_sites.entry_id 6W9M _atom_sites.fract_transf_matrix[1][1] 0.011486 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0057 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01892 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016029 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 TUV A 1 301 247 TUV LIG . D 4 GOL A 1 302 1 GOL GOL . E 4 GOL A 1 303 3 GOL GOL . F 5 HOH A 1 401 66 HOH HOH . F 5 HOH A 2 402 76 HOH HOH . F 5 HOH A 3 403 69 HOH HOH . F 5 HOH A 4 404 28 HOH HOH . F 5 HOH A 5 405 44 HOH HOH . F 5 HOH A 6 406 40 HOH HOH . F 5 HOH A 7 407 64 HOH HOH . F 5 HOH A 8 408 29 HOH HOH . F 5 HOH A 9 409 72 HOH HOH . F 5 HOH A 10 410 27 HOH HOH . F 5 HOH A 11 411 18 HOH HOH . F 5 HOH A 12 412 38 HOH HOH . F 5 HOH A 13 413 7 HOH HOH . F 5 HOH A 14 414 9 HOH HOH . F 5 HOH A 15 415 35 HOH HOH . F 5 HOH A 16 416 4 HOH HOH . F 5 HOH A 17 417 30 HOH HOH . F 5 HOH A 18 418 34 HOH HOH . F 5 HOH A 19 419 23 HOH HOH . F 5 HOH A 20 420 85 HOH HOH . F 5 HOH A 21 421 65 HOH HOH . F 5 HOH A 22 422 15 HOH HOH . F 5 HOH A 23 423 1 HOH HOH . F 5 HOH A 24 424 25 HOH HOH . F 5 HOH A 25 425 6 HOH HOH . F 5 HOH A 26 426 11 HOH HOH . F 5 HOH A 27 427 37 HOH HOH . F 5 HOH A 28 428 51 HOH HOH . F 5 HOH A 29 429 58 HOH HOH . F 5 HOH A 30 430 16 HOH HOH . F 5 HOH A 31 431 36 HOH HOH . F 5 HOH A 32 432 21 HOH HOH . F 5 HOH A 33 433 8 HOH HOH . F 5 HOH A 34 434 31 HOH HOH . F 5 HOH A 35 435 33 HOH HOH . F 5 HOH A 36 436 60 HOH HOH . F 5 HOH A 37 437 17 HOH HOH . F 5 HOH A 38 438 73 HOH HOH . F 5 HOH A 39 439 26 HOH HOH . F 5 HOH A 40 440 62 HOH HOH . F 5 HOH A 41 441 32 HOH HOH . F 5 HOH A 42 442 3 HOH HOH . F 5 HOH A 43 443 14 HOH HOH . F 5 HOH A 44 444 41 HOH HOH . F 5 HOH A 45 445 5 HOH HOH . F 5 HOH A 46 446 52 HOH HOH . F 5 HOH A 47 447 20 HOH HOH . F 5 HOH A 48 448 13 HOH HOH . F 5 HOH A 49 449 63 HOH HOH . F 5 HOH A 50 450 84 HOH HOH . F 5 HOH A 51 451 82 HOH HOH . F 5 HOH A 52 452 55 HOH HOH . F 5 HOH A 53 453 83 HOH HOH . F 5 HOH A 54 454 46 HOH HOH . F 5 HOH A 55 455 79 HOH HOH . F 5 HOH A 56 456 77 HOH HOH . F 5 HOH A 57 457 78 HOH HOH . F 5 HOH A 58 458 42 HOH HOH . F 5 HOH A 59 459 80 HOH HOH . G 5 HOH B 1 201 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 TUV . . . C 3 107.667 1.88 19.104 1 20.35 ? C10 TUV 301 A 1 HETATM 2 C C13 TUV . . . C 3 108.306 -2.171 17.346 1 29.39 ? C13 TUV 301 A 1 HETATM 3 C C15 TUV . . . C 3 108.045 -1.236 15.085 1 26.72 ? C15 TUV 301 A 1 HETATM 4 C C17 TUV . . . C 3 108.937 -3.165 16.265 1 22.89 ? C17 TUV 301 A 1 HETATM 5 C C20 TUV . . . C 3 108.874 -4.603 16.741 1 27.94 ? C20 TUV 301 A 1 HETATM 6 C C21 TUV . . . C 3 110.042 -5.215 17.562 1 26.92 ? C21 TUV 301 A 1 HETATM 7 C C22 TUV . . . C 3 108.774 -3.322 13.665 1 38.4 ? C22 TUV 301 A 1 HETATM 8 C C01 TUV . . . C 3 108.299 2.155 20.412 1 21.61 ? C01 TUV 301 A 1 HETATM 9 C C02 TUV . . . C 3 108.807 3.378 20.782 1 23.85 ? C02 TUV 301 A 1 HETATM 10 C C03 TUV . . . C 3 108.782 4.485 19.835 1 26.25 ? C03 TUV 301 A 1 HETATM 11 C C04 TUV . . . C 3 108.034 4.336 18.589 1 21.78 ? C04 TUV 301 A 1 HETATM 12 C C05 TUV . . . C 3 107.594 3.099 18.191 1 20.49 ? C05 TUV 301 A 1 HETATM 13 C C06 TUV . . . C 3 107.188 2.796 16.788 1 23.34 ? C06 TUV 301 A 1 HETATM 14 C C07 TUV . . . C 3 107.764 1.483 16.242 1 25.23 ? C07 TUV 301 A 1 HETATM 15 C C08 TUV . . . C 3 107.561 0.292 17.183 1 24.95 ? C08 TUV 301 A 1 HETATM 16 C C09 TUV . . . C 3 108.224 0.698 18.399 1 21.02 ? C09 TUV 301 A 1 HETATM 17 C C11 TUV . . . C 3 108.942 -0.32 19.015 1 21.48 ? C11 TUV 301 A 1 HETATM 18 C C12 TUV . . . C 3 109.294 -1.588 18.333 1 24.42 ? C12 TUV 301 A 1 HETATM 19 C C14 TUV . . . C 3 107.545 -1.115 16.512 1 39.08 ? C14 TUV 301 A 1 HETATM 20 C C16 TUV . . . C 3 108.145 -2.804 14.956 1 28.38 ? C16 TUV 301 A 1 HETATM 21 C C18 TUV . . . C 3 107.066 -2.792 18.016 1 27.59 ? C18 TUV 301 A 1 HETATM 22 C C19 TUV . . . C 3 106.118 1.644 19.394 1 24.41 ? C19 TUV 301 A 1 HETATM 23 O O01 TUV . . . C 3 109.407 5.511 20.086 1 28.33 ? O01 TUV 301 A 1 HETATM 24 O O03 TUV . . . C 3 110.293 -2.821 16.025 1 27.37 ? O03 TUV 301 A 1 HETATM 25 O O04 TUV . . . C 3 107.865 -5.221 16.489 1 32.73 ? O04 TUV 301 A 1 HETATM 26 O O05 TUV . . . C 3 109.583 -6.39 18.129 1 28.15 ? O05 TUV 301 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #