data_6W9M
#
_model_server_result.job_id            abFtQdk1cDV4dy2evg08xQ 
_model_server_result.datetime_utc      '2024-10-13 18:23:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6w9m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    6W9M 
#
_exptl.entry_id    6W9M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          116.394 
_cell.angle_gamma         90 
_cell.entry_id            6W9M 
_cell.length_a            87.065 
_cell.length_b            52.854 
_cell.length_c            69.646 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6W9M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6W9M 
_atom_sites.fract_transf_matrix[1][1]    0.011486 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.0057 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01892 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016029 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 TUV A 1 301 247 TUV LIG . 
D 4 GOL A 1 302 1 GOL GOL . 
E 4 GOL A 1 303 3 GOL GOL . 
F 5 HOH A 1 401 66 HOH HOH . 
F 5 HOH A 2 402 76 HOH HOH . 
F 5 HOH A 3 403 69 HOH HOH . 
F 5 HOH A 4 404 28 HOH HOH . 
F 5 HOH A 5 405 44 HOH HOH . 
F 5 HOH A 6 406 40 HOH HOH . 
F 5 HOH A 7 407 64 HOH HOH . 
F 5 HOH A 8 408 29 HOH HOH . 
F 5 HOH A 9 409 72 HOH HOH . 
F 5 HOH A 10 410 27 HOH HOH . 
F 5 HOH A 11 411 18 HOH HOH . 
F 5 HOH A 12 412 38 HOH HOH . 
F 5 HOH A 13 413 7 HOH HOH . 
F 5 HOH A 14 414 9 HOH HOH . 
F 5 HOH A 15 415 35 HOH HOH . 
F 5 HOH A 16 416 4 HOH HOH . 
F 5 HOH A 17 417 30 HOH HOH . 
F 5 HOH A 18 418 34 HOH HOH . 
F 5 HOH A 19 419 23 HOH HOH . 
F 5 HOH A 20 420 85 HOH HOH . 
F 5 HOH A 21 421 65 HOH HOH . 
F 5 HOH A 22 422 15 HOH HOH . 
F 5 HOH A 23 423 1 HOH HOH . 
F 5 HOH A 24 424 25 HOH HOH . 
F 5 HOH A 25 425 6 HOH HOH . 
F 5 HOH A 26 426 11 HOH HOH . 
F 5 HOH A 27 427 37 HOH HOH . 
F 5 HOH A 28 428 51 HOH HOH . 
F 5 HOH A 29 429 58 HOH HOH . 
F 5 HOH A 30 430 16 HOH HOH . 
F 5 HOH A 31 431 36 HOH HOH . 
F 5 HOH A 32 432 21 HOH HOH . 
F 5 HOH A 33 433 8 HOH HOH . 
F 5 HOH A 34 434 31 HOH HOH . 
F 5 HOH A 35 435 33 HOH HOH . 
F 5 HOH A 36 436 60 HOH HOH . 
F 5 HOH A 37 437 17 HOH HOH . 
F 5 HOH A 38 438 73 HOH HOH . 
F 5 HOH A 39 439 26 HOH HOH . 
F 5 HOH A 40 440 62 HOH HOH . 
F 5 HOH A 41 441 32 HOH HOH . 
F 5 HOH A 42 442 3 HOH HOH . 
F 5 HOH A 43 443 14 HOH HOH . 
F 5 HOH A 44 444 41 HOH HOH . 
F 5 HOH A 45 445 5 HOH HOH . 
F 5 HOH A 46 446 52 HOH HOH . 
F 5 HOH A 47 447 20 HOH HOH . 
F 5 HOH A 48 448 13 HOH HOH . 
F 5 HOH A 49 449 63 HOH HOH . 
F 5 HOH A 50 450 84 HOH HOH . 
F 5 HOH A 51 451 82 HOH HOH . 
F 5 HOH A 52 452 55 HOH HOH . 
F 5 HOH A 53 453 83 HOH HOH . 
F 5 HOH A 54 454 46 HOH HOH . 
F 5 HOH A 55 455 79 HOH HOH . 
F 5 HOH A 56 456 77 HOH HOH . 
F 5 HOH A 57 457 78 HOH HOH . 
F 5 HOH A 58 458 42 HOH HOH . 
F 5 HOH A 59 459 80 HOH HOH . 
G 5 HOH B 1 201 74 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 99.672 10.401 21.941 1 32.21 ? C1 GOL 302 A 1 
HETATM 2 O O1 GOL . . . D 4 99.243 10.681 20.642 1 28.54 ? O1 GOL 302 A 1 
HETATM 3 C C2 GOL . . . D 4 101.173 10.224 21.98 1 47.26 ? C2 GOL 302 A 1 
HETATM 4 O O2 GOL . . . D 4 101.815 11.432 21.779 1 35.83 ? O2 GOL 302 A 1 
HETATM 5 C C3 GOL . . . D 4 101.406 9.656 23.409 1 54.79 ? C3 GOL 302 A 1 
HETATM 6 O O3 GOL . . . D 4 102.318 8.611 23.304 1 64.09 ? O3 GOL 302 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#