data_6WAD # _model_server_result.job_id s1U2Onwm8L-KJbwEopQR4Q _model_server_result.datetime_utc '2024-11-22 21:51:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wad # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6WAD # _exptl.entry_id 6WAD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-bromo-N-(diphenylmethyl)-N-methylthiophene-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WAD _cell.length_a 94.068 _cell.length_b 94.068 _cell.length_c 109.242 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WAD _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 94.068 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 51 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 50 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 230 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 229 _struct_conn.ptnr2_symmetry 6_565 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.05 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C19 H16 Br N O S' _chem_comp.formula_weight 386.305 _chem_comp.id TQ7 _chem_comp.mon_nstd_flag . _chem_comp.name 5-bromo-N-(diphenylmethyl)-N-methylthiophene-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C17 TQ7 doub 354 n y C16 C15 TQ7 sing 355 n y C17 C18 TQ7 sing 356 n y C15 C14 TQ7 doub 357 n y C18 C13 TQ7 doub 358 n y C14 C13 TQ7 sing 359 n y C13 C6 TQ7 sing 360 n n C N TQ7 sing 361 n n O C1 TQ7 doub 362 n n N C1 TQ7 sing 363 n n N C6 TQ7 sing 364 n n C1 C2 TQ7 sing 365 n n C6 C7 TQ7 sing 366 n n S C2 TQ7 sing 367 n y S C5 TQ7 sing 368 n y C2 C3 TQ7 doub 369 n y C7 C12 TQ7 doub 370 n y C7 C8 TQ7 sing 371 n y C12 C11 TQ7 sing 372 n y C5 BR TQ7 sing 373 n n C5 C4 TQ7 doub 374 n y C3 C4 TQ7 sing 375 n y C8 C9 TQ7 doub 376 n y C11 C10 TQ7 doub 377 n y C9 C10 TQ7 sing 378 n y C4 H1 TQ7 sing 379 n n C6 H2 TQ7 sing 380 n n C8 H3 TQ7 sing 381 n n C9 H4 TQ7 sing 382 n n C10 H5 TQ7 sing 383 n n C11 H6 TQ7 sing 384 n n C12 H7 TQ7 sing 385 n n C14 H8 TQ7 sing 386 n n C15 H9 TQ7 sing 387 n n C3 H10 TQ7 sing 388 n n C H11 TQ7 sing 389 n n C H12 TQ7 sing 390 n n C H13 TQ7 sing 391 n n C18 H14 TQ7 sing 392 n n C17 H15 TQ7 sing 393 n n C16 H16 TQ7 sing 394 n n # _atom_sites.entry_id 6WAD _atom_sites.fract_transf_matrix[1][1] 0.010631 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009154 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 501 501 SAH SAH . C 3 TQ7 A 1 502 601 TQ7 XXX . D 4 HOH A 1 601 7 HOH HOH . D 4 HOH A 2 602 15 HOH HOH . D 4 HOH A 3 603 4 HOH HOH . D 4 HOH A 4 604 26 HOH HOH . D 4 HOH A 5 605 19 HOH HOH . D 4 HOH A 6 606 6 HOH HOH . D 4 HOH A 7 607 13 HOH HOH . D 4 HOH A 8 608 27 HOH HOH . D 4 HOH A 9 609 12 HOH HOH . D 4 HOH A 10 610 2 HOH HOH . D 4 HOH A 11 611 8 HOH HOH . D 4 HOH A 12 612 14 HOH HOH . D 4 HOH A 13 613 9 HOH HOH . D 4 HOH A 14 614 16 HOH HOH . D 4 HOH A 15 615 1 HOH HOH . D 4 HOH A 16 616 21 HOH HOH . D 4 HOH A 17 617 10 HOH HOH . D 4 HOH A 18 618 28 HOH HOH . D 4 HOH A 19 619 25 HOH HOH . D 4 HOH A 20 620 24 HOH HOH . D 4 HOH A 21 621 23 HOH HOH . D 4 HOH A 22 622 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 TQ7 . . . C 3 18.951 39.052 4.059 1 68.12 ? C4 TQ7 502 A 1 HETATM 2 C C5 TQ7 . . . C 3 17.981 38.453 3.327 1 80.08 ? C5 TQ7 502 A 1 HETATM 3 C C6 TQ7 . . . C 3 21.334 41.681 1.565 1 54.01 ? C6 TQ7 502 A 1 HETATM 4 C C7 TQ7 . . . C 3 21.895 42.368 2.805 1 53.5 ? C7 TQ7 502 A 1 HETATM 5 C C8 TQ7 . . . C 3 21.044 43.041 3.669 1 50.58 ? C8 TQ7 502 A 1 HETATM 6 C C9 TQ7 . . . C 3 21.512 43.553 4.865 1 51.09 ? C9 TQ7 502 A 1 HETATM 7 C C10 TQ7 . . . C 3 22.836 43.421 5.206 1 48.61 ? C10 TQ7 502 A 1 HETATM 8 C C11 TQ7 . . . C 3 23.697 42.767 4.355 1 52.03 ? C11 TQ7 502 A 1 HETATM 9 C C12 TQ7 . . . C 3 23.232 42.24 3.164 1 53.83 ? C12 TQ7 502 A 1 HETATM 10 C C13 TQ7 . . . C 3 22.255 41.519 0.364 1 55.94 ? C13 TQ7 502 A 1 HETATM 11 C C14 TQ7 . . . C 3 23.178 42.495 0.012 1 55.64 ? C14 TQ7 502 A 1 HETATM 12 C C15 TQ7 . . . C 3 23.918 42.381 -1.157 1 59.24 ? C15 TQ7 502 A 1 HETATM 13 O O TQ7 . . . C 3 17.876 42.059 0.721 1 59.92 ? O TQ7 502 A 1 HETATM 14 C C1 TQ7 . . . C 3 18.882 41.659 1.308 1 57.56 ? C1 TQ7 502 A 1 HETATM 15 C C2 TQ7 . . . C 3 18.769 40.511 2.241 1 65.11 ? C2 TQ7 502 A 1 HETATM 16 S S TQ7 . . . C 3 17.603 39.283 1.867 1 69.72 ? S TQ7 502 A 1 HETATM 17 BR BR TQ7 . . . C 3 17.008 36.902 3.788 1 117.1 ? BR TQ7 502 A 1 HETATM 18 C C3 TQ7 . . . C 3 19.404 40.225 3.456 1 63.36 ? C3 TQ7 502 A 1 HETATM 19 N N TQ7 . . . C 3 20.047 42.272 1.154 1 50.57 ? N TQ7 502 A 1 HETATM 20 C C TQ7 . . . C 3 20.028 43.59 0.543 1 49.85 ? C TQ7 502 A 1 HETATM 21 C C18 TQ7 . . . C 3 22.102 40.419 -0.473 1 60.53 ? C18 TQ7 502 A 1 HETATM 22 C C17 TQ7 . . . C 3 22.84 40.307 -1.642 1 65.15 ? C17 TQ7 502 A 1 HETATM 23 C C16 TQ7 . . . C 3 23.747 41.291 -1.987 1 58.77 ? C16 TQ7 502 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #