data_6WAQ # _model_server_result.job_id E3jdRTqo2NNugGGgYzAVKA _model_server_result.datetime_utc '2024-10-11 09:27:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6waq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 6WAQ # _exptl.entry_id 6WAQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6WAQ _cell.length_a 88.848 _cell.length_b 88.848 _cell.length_c 200.887 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WAQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G,H,K 1 1 B,C,E,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 B SG CYS 4 D CYS 323 1_555 B SG CYS 29 D CYS 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 B SG CYS 47 D CYS 366 1_555 B SG CYS 100 D CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf4 B SG CYS 59 D CYS 378 1_555 D SG CYS 59 B CYS 378 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 B SG CYS 148 D CYS 467 1_555 B SG CYS 155 D CYS 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf6 C SG CYS 22 C CYS 22 1_555 C SG CYS 96 C CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 D SG CYS 4 B CYS 323 1_555 D SG CYS 29 B CYS 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf8 D SG CYS 47 B CYS 366 1_555 D SG CYS 100 B CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf9 D SG CYS 148 B CYS 467 1_555 D SG CYS 155 B CYS 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? covale ? covale1 B ND2 ASN 11 D ASN 330 1_555 E C1 NAG . D NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 B ND2 ASN 38 D ASN 357 1_555 F C1 NAG . D NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 D ND2 ASN 11 B ASN 330 1_555 G C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6WAQ _atom_sites.fract_transf_matrix[1][1] 0.011255 _atom_sites.fract_transf_matrix[1][2] 0.006498 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012996 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004978 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG D 1 601 505 NAG NAG . F 3 NAG D 1 602 506 NAG NAG . G 3 NAG B 1 601 511 NAG NAG . H 4 HOH A 1 201 81 HOH HOH . H 4 HOH A 2 202 96 HOH HOH . H 4 HOH A 3 203 95 HOH HOH . I 4 HOH D 1 701 55 HOH HOH . I 4 HOH D 2 702 38 HOH HOH . I 4 HOH D 3 703 72 HOH HOH . I 4 HOH D 4 704 51 HOH HOH . I 4 HOH D 5 705 99 HOH HOH . I 4 HOH D 6 706 92 HOH HOH . I 4 HOH D 7 707 48 HOH HOH . I 4 HOH D 8 708 50 HOH HOH . I 4 HOH D 9 709 39 HOH HOH . I 4 HOH D 10 710 16 HOH HOH . I 4 HOH D 11 711 60 HOH HOH . I 4 HOH D 12 712 33 HOH HOH . I 4 HOH D 13 713 5 HOH HOH . I 4 HOH D 14 714 86 HOH HOH . I 4 HOH D 15 715 85 HOH HOH . I 4 HOH D 16 716 10 HOH HOH . I 4 HOH D 17 717 9 HOH HOH . I 4 HOH D 18 718 102 HOH HOH . I 4 HOH D 19 719 8 HOH HOH . I 4 HOH D 20 720 17 HOH HOH . I 4 HOH D 21 721 40 HOH HOH . I 4 HOH D 22 722 78 HOH HOH . I 4 HOH D 23 723 30 HOH HOH . I 4 HOH D 24 724 24 HOH HOH . I 4 HOH D 25 725 25 HOH HOH . I 4 HOH D 26 726 73 HOH HOH . I 4 HOH D 27 727 4 HOH HOH . I 4 HOH D 28 728 27 HOH HOH . I 4 HOH D 29 729 64 HOH HOH . I 4 HOH D 30 730 45 HOH HOH . I 4 HOH D 31 731 3 HOH HOH . I 4 HOH D 32 732 90 HOH HOH . I 4 HOH D 33 733 63 HOH HOH . I 4 HOH D 34 734 34 HOH HOH . I 4 HOH D 35 735 26 HOH HOH . I 4 HOH D 36 736 46 HOH HOH . I 4 HOH D 37 737 70 HOH HOH . I 4 HOH D 38 738 41 HOH HOH . I 4 HOH D 39 739 22 HOH HOH . I 4 HOH D 40 740 14 HOH HOH . I 4 HOH D 41 741 61 HOH HOH . I 4 HOH D 42 742 35 HOH HOH . I 4 HOH D 43 743 37 HOH HOH . I 4 HOH D 44 744 13 HOH HOH . I 4 HOH D 45 745 87 HOH HOH . I 4 HOH D 46 746 71 HOH HOH . I 4 HOH D 47 747 77 HOH HOH . I 4 HOH D 48 748 44 HOH HOH . I 4 HOH D 49 749 82 HOH HOH . I 4 HOH D 50 750 83 HOH HOH . J 4 HOH C 1 201 100 HOH HOH . J 4 HOH C 2 202 74 HOH HOH . J 4 HOH C 3 203 57 HOH HOH . J 4 HOH C 4 204 18 HOH HOH . J 4 HOH C 5 205 98 HOH HOH . J 4 HOH C 6 206 12 HOH HOH . J 4 HOH C 7 207 76 HOH HOH . J 4 HOH C 8 208 2 HOH HOH . J 4 HOH C 9 209 19 HOH HOH . J 4 HOH C 10 210 56 HOH HOH . J 4 HOH C 11 211 20 HOH HOH . J 4 HOH C 12 212 6 HOH HOH . J 4 HOH C 13 213 11 HOH HOH . J 4 HOH C 14 214 7 HOH HOH . J 4 HOH C 15 215 29 HOH HOH . J 4 HOH C 16 216 15 HOH HOH . J 4 HOH C 17 217 79 HOH HOH . J 4 HOH C 18 218 23 HOH HOH . J 4 HOH C 19 219 67 HOH HOH . J 4 HOH C 20 220 54 HOH HOH . J 4 HOH C 21 221 69 HOH HOH . J 4 HOH C 22 222 31 HOH HOH . J 4 HOH C 23 223 53 HOH HOH . J 4 HOH C 24 224 21 HOH HOH . J 4 HOH C 25 225 68 HOH HOH . J 4 HOH C 26 226 93 HOH HOH . J 4 HOH C 27 227 49 HOH HOH . K 4 HOH B 1 701 36 HOH HOH . K 4 HOH B 2 702 65 HOH HOH . K 4 HOH B 3 703 89 HOH HOH . K 4 HOH B 4 704 32 HOH HOH . K 4 HOH B 5 705 1 HOH HOH . K 4 HOH B 6 706 80 HOH HOH . K 4 HOH B 7 707 47 HOH HOH . K 4 HOH B 8 708 91 HOH HOH . K 4 HOH B 9 709 84 HOH HOH . K 4 HOH B 10 710 52 HOH HOH . K 4 HOH B 11 711 43 HOH HOH . K 4 HOH B 12 712 62 HOH HOH . K 4 HOH B 13 713 66 HOH HOH . K 4 HOH B 14 714 58 HOH HOH . K 4 HOH B 15 715 59 HOH HOH . K 4 HOH B 16 716 42 HOH HOH . K 4 HOH B 17 717 28 HOH HOH . K 4 HOH B 18 718 75 HOH HOH . K 4 HOH B 19 719 97 HOH HOH . K 4 HOH B 20 720 88 HOH HOH . K 4 HOH B 21 721 94 HOH HOH . K 4 HOH B 22 722 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 3 24.896 41.523 -29.433 1 88.83 ? C1 NAG 601 B 1 HETATM 2 C C2 NAG . . . G 3 25.16 42.588 -30.479 1 98.3 ? C2 NAG 601 B 1 HETATM 3 C C3 NAG . . . G 3 25.102 43.956 -29.818 1 102.99 ? C3 NAG 601 B 1 HETATM 4 C C4 NAG . . . G 3 23.742 44.162 -29.163 1 105.78 ? C4 NAG 601 B 1 HETATM 5 C C5 NAG . . . G 3 23.345 42.985 -28.261 1 107.88 ? C5 NAG 601 B 1 HETATM 6 C C6 NAG . . . G 3 21.872 43.004 -27.929 1 108.31 ? C6 NAG 601 B 1 HETATM 7 C C7 NAG . . . G 3 26.491 42.211 -32.494 1 102.81 ? C7 NAG 601 B 1 HETATM 8 C C8 NAG . . . G 3 27.863 42.088 -33.073 1 103.41 ? C8 NAG 601 B 1 HETATM 9 N N2 NAG . . . G 3 26.425 42.407 -31.173 1 102.18 ? N2 NAG 601 B 1 HETATM 10 O O3 NAG . . . G 3 25.346 44.975 -30.781 1 102.75 ? O3 NAG 601 B 1 HETATM 11 O O4 NAG . . . G 3 23.774 45.344 -28.37 1 104.4 ? O4 NAG 601 B 1 HETATM 12 O O5 NAG . . . G 3 23.588 41.713 -28.888 1 103.36 ? O5 NAG 601 B 1 HETATM 13 O O6 NAG . . . G 3 21.089 42.993 -29.116 1 106 ? O6 NAG 601 B 1 HETATM 14 O O7 NAG . . . G 3 25.483 42.128 -33.188 1 101.22 ? O7 NAG 601 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #