data_6WAR # _model_server_result.job_id bTtgZMjxhjptVVSIYFmrcw _model_server_result.datetime_utc '2024-10-11 11:21:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6war # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":601}' # _entry.id 6WAR # _exptl.entry_id 6WAR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WAR _cell.length_a 150.047 _cell.length_b 283.378 _cell.length_c 173.76 _cell.Z_PDB 64 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WAR _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 ? dimeric 2 author_defined_assembly 4 ? dimeric 2 author_defined_assembly 5 ? dimeric 2 author_defined_assembly 6 ? dimeric 2 author_defined_assembly 7 ? dimeric 2 author_defined_assembly 8 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B 1 1 C,D 2 1 E,F,Q 3 1 G,H,R 4 1 I,J 5 1 K,L 6 1 M,N 7 1 O,P,S 8 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 Q N N ? 3 R N N ? 3 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 17 A CYS 383 1_555 A SG CYS 41 A CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 59 A CYS 425 1_555 A SG CYS 112 A CYS 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf3 A SG CYS 71 A CYS 437 1_555 A SG CYS 219 A CYS 585 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf4 A SG CYS 137 A CYS 503 1_555 A SG CYS 160 A CYS 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 B SG CYS 22 B CYS 22 1_555 B SG CYS 95 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf6 C SG CYS 17 C CYS 383 1_555 C SG CYS 41 C CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 C SG CYS 59 C CYS 425 1_555 C SG CYS 112 C CYS 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf8 C SG CYS 71 C CYS 437 1_555 C SG CYS 219 C CYS 585 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf9 C SG CYS 137 C CYS 503 1_555 C SG CYS 160 C CYS 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf10 D SG CYS 22 D CYS 22 1_555 D SG CYS 95 D CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf11 E SG CYS 17 E CYS 383 1_555 E SG CYS 41 E CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf12 E SG CYS 59 E CYS 425 1_555 E SG CYS 112 E CYS 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf13 E SG CYS 71 E CYS 437 1_555 E SG CYS 219 E CYS 585 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf14 E SG CYS 137 E CYS 503 1_555 E SG CYS 160 E CYS 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf15 F SG CYS 22 F CYS 22 1_555 F SG CYS 95 F CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf16 G SG CYS 17 G CYS 383 1_555 G SG CYS 41 G CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf17 G SG CYS 59 G CYS 425 1_555 G SG CYS 112 G CYS 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf18 G SG CYS 71 G CYS 437 1_555 G SG CYS 219 G CYS 585 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf19 G SG CYS 137 G CYS 503 1_555 G SG CYS 160 G CYS 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf20 H SG CYS 22 H CYS 22 1_555 H SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf21 I SG CYS 17 I CYS 383 1_555 I SG CYS 41 I CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf22 I SG CYS 59 I CYS 425 1_555 I SG CYS 112 I CYS 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf23 I SG CYS 71 I CYS 437 1_555 I SG CYS 219 I CYS 585 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf24 I SG CYS 137 I CYS 503 1_555 I SG CYS 160 I CYS 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf25 J SG CYS 22 J CYS 22 1_555 J SG CYS 95 J CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf26 K SG CYS 17 K CYS 383 1_555 K SG CYS 41 K CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf27 K SG CYS 59 K CYS 425 1_555 K SG CYS 112 K CYS 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf28 K SG CYS 71 K CYS 437 1_555 K SG CYS 219 K CYS 585 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf29 K SG CYS 137 K CYS 503 1_555 K SG CYS 160 K CYS 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf30 L SG CYS 22 L CYS 22 1_555 L SG CYS 95 L CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf31 M SG CYS 17 M CYS 383 1_555 M SG CYS 41 M CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf32 M SG CYS 59 M CYS 425 1_555 M SG CYS 112 M CYS 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf33 M SG CYS 71 M CYS 437 1_555 M SG CYS 219 M CYS 585 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf34 M SG CYS 137 M CYS 503 1_555 M SG CYS 160 M CYS 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf35 N SG CYS 22 N CYS 22 1_555 N SG CYS 95 N CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf36 O SG CYS 17 O CYS 383 1_555 O SG CYS 41 O CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf37 O SG CYS 59 O CYS 425 1_555 O SG CYS 112 O CYS 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf38 O SG CYS 71 O CYS 437 1_555 O SG CYS 219 O CYS 585 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf39 O SG CYS 137 O CYS 503 1_555 O SG CYS 160 O CYS 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf40 P SG CYS 22 P CYS 22 1_555 P SG CYS 95 P CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? covale ? covale1 E ND2 ASN 121 E ASN 487 1_555 Q C1 NAG . E NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 G ND2 ASN 44 G ASN 410 1_555 R C1 NAG . G NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 O ND2 ASN 44 O ASN 410 1_555 S C1 NAG . O NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6WAR _atom_sites.fract_transf_matrix[1][1] 0.006665 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005755 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 3 NAG E 1 601 589 NAG NAG . R 3 NAG G 1 601 589 NAG NAG . S 3 NAG O 1 601 589 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . S 3 -70.874 34.828 77.282 1 141.94 ? C1 NAG 601 O 1 HETATM 2 C C2 NAG . . . S 3 -70.918 33.619 78.175 1 148.03 ? C2 NAG 601 O 1 HETATM 3 C C3 NAG . . . S 3 -71.5 34.047 79.516 1 150.68 ? C3 NAG 601 O 1 HETATM 4 C C4 NAG . . . S 3 -70.676 35.204 80.083 1 148.51 ? C4 NAG 601 O 1 HETATM 5 C C5 NAG . . . S 3 -70.376 36.296 79.037 1 143.86 ? C5 NAG 601 O 1 HETATM 6 C C6 NAG . . . S 3 -69.307 37.268 79.485 1 142.53 ? C6 NAG 601 O 1 HETATM 7 C C7 NAG . . . S 3 -71.268 31.242 77.678 1 154.64 ? C7 NAG 601 O 1 HETATM 8 C C8 NAG . . . S 3 -69.981 31.002 78.417 1 156.28 ? C8 NAG 601 O 1 HETATM 9 N N2 NAG . . . S 3 -71.668 32.518 77.593 1 152.3 ? N2 NAG 601 O 1 HETATM 10 O O3 NAG . . . S 3 -71.534 32.958 80.433 1 154.63 ? O3 NAG 601 O 1 HETATM 11 O O4 NAG . . . S 3 -71.376 35.806 81.165 1 151.37 ? O4 NAG 601 O 1 HETATM 12 O O5 NAG . . . S 3 -69.931 35.743 77.785 1 139.7 ? O5 NAG 601 O 1 HETATM 13 O O6 NAG . . . S 3 -68.022 36.885 79.013 1 138.95 ? O6 NAG 601 O 1 HETATM 14 O O7 NAG . . . S 3 -71.912 30.323 77.18 1 154.13 ? O7 NAG 601 O 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #