data_6WBF # _model_server_result.job_id '_Sfsi07BebdnwUdcqxb7_A' _model_server_result.datetime_utc '2024-11-05 04:07:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wbf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"YA","auth_seq_id":402}' # _entry.id 6WBF # _exptl.entry_id 6WBF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 734.039 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WBF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WBF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 H N N ? 2 I N N ? 2 O N N ? 2 P N N ? 2 V N N ? 2 W N N ? 2 CA N N ? 2 DA N N ? 2 JA N N ? 2 KA N N ? 2 QA N N ? 2 RA N N ? 2 XA N N ? 2 YA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 265 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 84 A CYS 84 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 B SG CYS 66 B CYS 66 1_555 B SG CYS 265 B CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 B SG CYS 84 B CYS 84 1_555 B SG CYS 246 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 C SG CYS 66 C CYS 66 1_555 C SG CYS 265 C CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 C SG CYS 84 C CYS 84 1_555 C SG CYS 246 C CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 D SG CYS 66 D CYS 66 1_555 D SG CYS 265 D CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 D SG CYS 84 D CYS 84 1_555 D SG CYS 246 D CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf9 E SG CYS 66 E CYS 66 1_555 E SG CYS 265 E CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 E SG CYS 84 E CYS 84 1_555 E SG CYS 246 E CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf11 F SG CYS 66 F CYS 66 1_555 F SG CYS 265 F CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf12 F SG CYS 84 F CYS 84 1_555 F SG CYS 246 F CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf13 G SG CYS 66 G CYS 66 1_555 G SG CYS 265 G CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf14 G SG CYS 84 G CYS 84 1_555 G SG CYS 246 G CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 255 A ASN 255 1_555 N C1 NAG . A NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 B ND2 ASN 255 B ASN 255 1_555 U C1 NAG . B NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 C ND2 ASN 255 C ASN 255 1_555 BA C1 NAG . C NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 D ND2 ASN 255 D ASN 255 1_555 IA C1 NAG . D NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 E ND2 ASN 255 E ASN 255 1_555 PA C1 NAG . E NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale6 F ND2 ASN 255 F ASN 255 1_555 WA C1 NAG . F NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale7 G ND2 ASN 255 G ASN 255 1_555 DB C1 NAG . G NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6WBF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 PTY A 1 401 401 PTY PTY . I 2 PTY A 1 402 402 PTY PTY . J 3 3PE A 1 403 403 3PE PEH . K 4 DGA A 1 404 404 DGA DGA . L 5 CLR A 1 405 405 CLR CLR . M 5 CLR A 1 406 406 CLR CLR . N 6 NAG A 1 407 501 NAG NAG . O 2 PTY B 1 401 401 PTY PTY . P 2 PTY B 1 402 402 PTY PTY . Q 3 3PE B 1 403 403 3PE PEH . R 4 DGA B 1 404 404 DGA DGA . S 5 CLR B 1 405 405 CLR CLR . T 5 CLR B 1 406 406 CLR CLR . U 6 NAG B 1 407 501 NAG NAG . V 2 PTY C 1 401 401 PTY PTY . W 2 PTY C 1 402 402 PTY PTY . X 3 3PE C 1 403 403 3PE PEH . Y 4 DGA C 1 404 404 DGA DGA . Z 5 CLR C 1 405 405 CLR CLR . AA 5 CLR C 1 406 406 CLR CLR . BA 6 NAG C 1 407 501 NAG NAG . CA 2 PTY D 1 401 401 PTY PTY . DA 2 PTY D 1 402 402 PTY PTY . EA 3 3PE D 1 403 403 3PE PEH . FA 4 DGA D 1 404 404 DGA DGA . GA 5 CLR D 1 405 405 CLR CLR . HA 5 CLR D 1 406 406 CLR CLR . IA 6 NAG D 1 407 501 NAG NAG . JA 2 PTY E 1 401 401 PTY PTY . KA 2 PTY E 1 402 402 PTY PTY . LA 3 3PE E 1 403 403 3PE PEH . MA 4 DGA E 1 404 404 DGA DGA . NA 5 CLR E 1 405 405 CLR CLR . OA 5 CLR E 1 406 406 CLR CLR . PA 6 NAG E 1 407 501 NAG NAG . QA 2 PTY F 1 401 401 PTY PTY . RA 2 PTY F 1 402 402 PTY PTY . SA 3 3PE F 1 403 403 3PE PEH . TA 4 DGA F 1 404 404 DGA DGA . UA 5 CLR F 1 405 405 CLR CLR . VA 5 CLR F 1 406 406 CLR CLR . WA 6 NAG F 1 407 501 NAG NAG . XA 2 PTY G 1 401 401 PTY PTY . YA 2 PTY G 1 402 402 PTY PTY . ZA 3 3PE G 1 403 403 3PE PEH . AB 4 DGA G 1 404 404 DGA DGA . BB 5 CLR G 1 405 405 CLR CLR . CB 5 CLR G 1 406 406 CLR CLR . DB 6 NAG G 1 407 501 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . YA 2 91.969 109.065 98.11 1 93.57 ? C1 PTY 402 G 1 HETATM 2 C C2 PTY . . . YA 2 85.722 112.179 96.715 1 93.57 ? C2 PTY 402 G 1 HETATM 3 C C3 PTY . . . YA 2 86.838 112.904 97.421 1 93.57 ? C3 PTY 402 G 1 HETATM 4 O O4 PTY . . . YA 2 91.176 108.803 99.288 1 93.57 ? O4 PTY 402 G 1 HETATM 5 C C5 PTY . . . YA 2 89.925 110.283 97.256 1 93.57 ? C5 PTY 402 G 1 HETATM 6 C C6 PTY . . . YA 2 91.04 109.313 96.943 1 93.57 ? C6 PTY 402 G 1 HETATM 7 O O7 PTY . . . YA 2 90.463 108.05 96.518 1 93.57 ? O7 PTY 402 G 1 HETATM 8 C C8 PTY . . . YA 2 89.92 107.261 97.456 1 93.57 ? C8 PTY 402 G 1 HETATM 9 O O10 PTY . . . YA 2 90.56 106.425 98.039 1 93.57 ? O10 PTY 402 G 1 HETATM 10 C C11 PTY . . . YA 2 88.462 107.541 97.694 1 93.57 ? C11 PTY 402 G 1 HETATM 11 C C12 PTY . . . YA 2 88.109 107.673 99.143 1 93.57 ? C12 PTY 402 G 1 HETATM 12 C C13 PTY . . . YA 2 86.962 108.642 99.376 1 93.57 ? C13 PTY 402 G 1 HETATM 13 C C14 PTY . . . YA 2 86.192 108.392 100.649 1 93.57 ? C14 PTY 402 G 1 HETATM 14 C C15 PTY . . . YA 2 87.003 108.568 101.909 1 93.57 ? C15 PTY 402 G 1 HETATM 15 C C16 PTY . . . YA 2 87.993 107.461 102.168 1 93.57 ? C16 PTY 402 G 1 HETATM 16 C C17 PTY . . . YA 2 88.93 107.723 103.32 1 93.57 ? C17 PTY 402 G 1 HETATM 17 C C18 PTY . . . YA 2 88.277 108.378 104.514 1 93.57 ? C18 PTY 402 G 1 HETATM 18 C C19 PTY . . . YA 2 88.648 107.76 105.839 1 93.57 ? C19 PTY 402 G 1 HETATM 19 C C20 PTY . . . YA 2 90.117 107.433 105.98 1 93.57 ? C20 PTY 402 G 1 HETATM 20 C C21 PTY . . . YA 2 90.578 107.266 107.407 1 93.57 ? C21 PTY 402 G 1 HETATM 21 C C30 PTY . . . YA 2 91.849 108.567 100.408 1 93.57 ? C30 PTY 402 G 1 HETATM 22 C C31 PTY . . . YA 2 91.291 107.387 101.15 1 93.57 ? C31 PTY 402 G 1 HETATM 23 O O30 PTY . . . YA 2 92.788 109.231 100.766 1 93.57 ? O30 PTY 402 G 1 HETATM 24 C C32 PTY . . . YA 2 92.266 106.77 102.102 1 93.57 ? C32 PTY 402 G 1 HETATM 25 C C33 PTY . . . YA 2 92.874 107.786 103.053 1 93.57 ? C33 PTY 402 G 1 HETATM 26 C C34 PTY . . . YA 2 93.771 107.188 104.107 1 93.57 ? C34 PTY 402 G 1 HETATM 27 C C35 PTY . . . YA 2 93.596 107.786 105.481 1 93.57 ? C35 PTY 402 G 1 HETATM 28 C C36 PTY . . . YA 2 94.111 106.918 106.602 1 93.57 ? C36 PTY 402 G 1 HETATM 29 C C37 PTY . . . YA 2 93.463 107.189 107.939 1 93.57 ? C37 PTY 402 G 1 HETATM 30 C C38 PTY . . . YA 2 94.345 106.886 109.126 1 93.57 ? C38 PTY 402 G 1 HETATM 31 C C39 PTY . . . YA 2 93.869 107.5 110.421 1 93.57 ? C39 PTY 402 G 1 HETATM 32 C C40 PTY . . . YA 2 94.782 107.251 111.595 1 93.57 ? C40 PTY 402 G 1 HETATM 33 C C41 PTY . . . YA 2 94.545 108.164 112.771 1 93.57 ? C41 PTY 402 G 1 HETATM 34 P P1 PTY . . . YA 2 89.464 112.847 97.685 1 93.57 ? P1 PTY 402 G 1 HETATM 35 O O11 PTY . . . YA 2 88.118 112.457 96.901 1 93.57 ? O11 PTY 402 G 1 HETATM 36 O O12 PTY . . . YA 2 89.181 112.789 99.16 1 93.57 ? O12 PTY 402 G 1 HETATM 37 O O13 PTY . . . YA 2 90.017 114.105 97.077 1 93.57 ? O13 PTY 402 G 1 HETATM 38 O O14 PTY . . . YA 2 90.453 111.636 97.316 1 93.57 ? O14 PTY 402 G 1 HETATM 39 N N1 PTY . . . YA 2 85.075 111.194 97.584 1 93.57 ? N1 PTY 402 G 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 39 #