data_6WBF # _model_server_result.job_id pzt4VDy4ibhMMCQiSF8zTA _model_server_result.datetime_utc '2024-11-05 04:06:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wbf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"LA","auth_seq_id":403}' # _entry.id 6WBF # _exptl.entry_id 6WBF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 748.065 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-Distearoyl-sn-glycerophosphoethanolamine _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WBF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WBF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 Q N N ? 3 X N N ? 3 EA N N ? 3 LA N N ? 3 SA N N ? 3 ZA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 265 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 84 A CYS 84 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 B SG CYS 66 B CYS 66 1_555 B SG CYS 265 B CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 B SG CYS 84 B CYS 84 1_555 B SG CYS 246 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 C SG CYS 66 C CYS 66 1_555 C SG CYS 265 C CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 C SG CYS 84 C CYS 84 1_555 C SG CYS 246 C CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 D SG CYS 66 D CYS 66 1_555 D SG CYS 265 D CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 D SG CYS 84 D CYS 84 1_555 D SG CYS 246 D CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf9 E SG CYS 66 E CYS 66 1_555 E SG CYS 265 E CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 E SG CYS 84 E CYS 84 1_555 E SG CYS 246 E CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf11 F SG CYS 66 F CYS 66 1_555 F SG CYS 265 F CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf12 F SG CYS 84 F CYS 84 1_555 F SG CYS 246 F CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf13 G SG CYS 66 G CYS 66 1_555 G SG CYS 265 G CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf14 G SG CYS 84 G CYS 84 1_555 G SG CYS 246 G CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 255 A ASN 255 1_555 N C1 NAG . A NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 B ND2 ASN 255 B ASN 255 1_555 U C1 NAG . B NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 C ND2 ASN 255 C ASN 255 1_555 BA C1 NAG . C NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 D ND2 ASN 255 D ASN 255 1_555 IA C1 NAG . D NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 E ND2 ASN 255 E ASN 255 1_555 PA C1 NAG . E NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale6 F ND2 ASN 255 F ASN 255 1_555 WA C1 NAG . F NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale7 G ND2 ASN 255 G ASN 255 1_555 DB C1 NAG . G NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C41 H82 N O8 P' _chem_comp.formula_weight 748.065 _chem_comp.id 3PE _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-Distearoyl-sn-glycerophosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLETHANOLAMINE;1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE # _atom_sites.entry_id 6WBF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 PTY A 1 401 401 PTY PTY . I 2 PTY A 1 402 402 PTY PTY . J 3 3PE A 1 403 403 3PE PEH . K 4 DGA A 1 404 404 DGA DGA . L 5 CLR A 1 405 405 CLR CLR . M 5 CLR A 1 406 406 CLR CLR . N 6 NAG A 1 407 501 NAG NAG . O 2 PTY B 1 401 401 PTY PTY . P 2 PTY B 1 402 402 PTY PTY . Q 3 3PE B 1 403 403 3PE PEH . R 4 DGA B 1 404 404 DGA DGA . S 5 CLR B 1 405 405 CLR CLR . T 5 CLR B 1 406 406 CLR CLR . U 6 NAG B 1 407 501 NAG NAG . V 2 PTY C 1 401 401 PTY PTY . W 2 PTY C 1 402 402 PTY PTY . X 3 3PE C 1 403 403 3PE PEH . Y 4 DGA C 1 404 404 DGA DGA . Z 5 CLR C 1 405 405 CLR CLR . AA 5 CLR C 1 406 406 CLR CLR . BA 6 NAG C 1 407 501 NAG NAG . CA 2 PTY D 1 401 401 PTY PTY . DA 2 PTY D 1 402 402 PTY PTY . EA 3 3PE D 1 403 403 3PE PEH . FA 4 DGA D 1 404 404 DGA DGA . GA 5 CLR D 1 405 405 CLR CLR . HA 5 CLR D 1 406 406 CLR CLR . IA 6 NAG D 1 407 501 NAG NAG . JA 2 PTY E 1 401 401 PTY PTY . KA 2 PTY E 1 402 402 PTY PTY . LA 3 3PE E 1 403 403 3PE PEH . MA 4 DGA E 1 404 404 DGA DGA . NA 5 CLR E 1 405 405 CLR CLR . OA 5 CLR E 1 406 406 CLR CLR . PA 6 NAG E 1 407 501 NAG NAG . QA 2 PTY F 1 401 401 PTY PTY . RA 2 PTY F 1 402 402 PTY PTY . SA 3 3PE F 1 403 403 3PE PEH . TA 4 DGA F 1 404 404 DGA DGA . UA 5 CLR F 1 405 405 CLR CLR . VA 5 CLR F 1 406 406 CLR CLR . WA 6 NAG F 1 407 501 NAG NAG . XA 2 PTY G 1 401 401 PTY PTY . YA 2 PTY G 1 402 402 PTY PTY . ZA 3 3PE G 1 403 403 3PE PEH . AB 4 DGA G 1 404 404 DGA DGA . BB 5 CLR G 1 405 405 CLR CLR . CB 5 CLR G 1 406 406 CLR CLR . DB 6 NAG G 1 407 501 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 3PE . . . LA 3 140.446 90.963 133.886 1 107.83 ? P 3PE 403 E 1 HETATM 2 N N 3PE . . . LA 3 140.759 90.839 137.776 1 107.83 ? N 3PE 403 E 1 HETATM 3 O O11 3PE . . . LA 3 141.517 91.356 132.756 1 107.83 ? O11 3PE 403 E 1 HETATM 4 O O12 3PE . . . LA 3 139.524 92.134 134.087 1 107.83 ? O12 3PE 403 E 1 HETATM 5 O O13 3PE . . . LA 3 141.351 90.81 135.203 1 107.83 ? O13 3PE 403 E 1 HETATM 6 O O14 3PE . . . LA 3 139.878 89.611 133.549 1 107.83 ? O14 3PE 403 E 1 HETATM 7 C C11 3PE . . . LA 3 141.819 92.006 135.885 1 107.83 ? C11 3PE 403 E 1 HETATM 8 C C12 3PE . . . LA 3 141.111 92.142 137.207 1 107.83 ? C12 3PE 403 E 1 HETATM 9 C C1 3PE . . . LA 3 142.321 92.556 132.925 1 107.83 ? C1 3PE 403 E 1 HETATM 10 C C2 3PE . . . LA 3 142.313 93.36 131.646 1 107.83 ? C2 3PE 403 E 1 HETATM 11 C C3 3PE . . . LA 3 142.482 94.847 131.864 1 107.83 ? C3 3PE 403 E 1 HETATM 12 O O31 3PE . . . LA 3 142.486 95.505 130.578 1 107.83 ? O31 3PE 403 E 1 HETATM 13 O O32 3PE . . . LA 3 142.213 97.47 131.594 1 107.83 ? O32 3PE 403 E 1 HETATM 14 C C31 3PE . . . LA 3 142.252 96.812 130.587 1 107.83 ? C31 3PE 403 E 1 HETATM 15 C C32 3PE . . . LA 3 142.043 97.346 129.197 1 107.83 ? C32 3PE 403 E 1 HETATM 16 C C33 3PE . . . LA 3 141.88 98.833 129.151 1 107.83 ? C33 3PE 403 E 1 HETATM 17 C C34 3PE . . . LA 3 142.852 99.495 128.187 1 107.83 ? C34 3PE 403 E 1 HETATM 18 C C35 3PE . . . LA 3 142.309 99.685 126.793 1 107.83 ? C35 3PE 403 E 1 HETATM 19 C C36 3PE . . . LA 3 143.202 100.494 125.884 1 107.83 ? C36 3PE 403 E 1 HETATM 20 C C37 3PE . . . LA 3 143.685 99.749 124.664 1 107.83 ? C37 3PE 403 E 1 HETATM 21 C C38 3PE . . . LA 3 144.982 99.006 124.862 1 107.83 ? C38 3PE 403 E 1 HETATM 22 C C39 3PE . . . LA 3 146.174 99.647 124.191 1 107.83 ? C39 3PE 403 E 1 HETATM 23 C C3A 3PE . . . LA 3 147.493 98.989 124.51 1 107.83 ? C3A 3PE 403 E 1 HETATM 24 C C3B 3PE . . . LA 3 148.53 99.927 125.079 1 107.83 ? C3B 3PE 403 E 1 HETATM 25 C C3C 3PE . . . LA 3 149.842 99.265 125.421 1 107.83 ? C3C 3PE 403 E 1 HETATM 26 C C3D 3PE . . . LA 3 150.08 99.085 126.9 1 107.83 ? C3D 3PE 403 E 1 HETATM 27 C C3E 3PE . . . LA 3 150.974 97.919 127.246 1 107.83 ? C3E 3PE 403 E 1 HETATM 28 C C3F 3PE . . . LA 3 151.323 97.818 128.709 1 107.83 ? C3F 3PE 403 E 1 HETATM 29 C C3G 3PE . . . LA 3 151.888 96.482 129.123 1 107.83 ? C3G 3PE 403 E 1 HETATM 30 C C3H 3PE . . . LA 3 151.572 96.086 130.541 1 107.83 ? C3H 3PE 403 E 1 HETATM 31 C C3I 3PE . . . LA 3 152.343 94.881 131.026 1 107.83 ? C3I 3PE 403 E 1 HETATM 32 O O21 3PE . . . LA 3 143.38 92.886 130.78 1 107.83 ? O21 3PE 403 E 1 HETATM 33 O O22 3PE . . . LA 3 143.98 90.747 130.962 1 107.83 ? O22 3PE 403 E 1 HETATM 34 C C21 3PE . . . LA 3 143.354 91.602 130.394 1 107.83 ? C21 3PE 403 E 1 HETATM 35 C C22 3PE . . . LA 3 142.473 91.366 129.198 1 107.83 ? C22 3PE 403 E 1 HETATM 36 C C23 3PE . . . LA 3 143.239 91.049 127.953 1 107.83 ? C23 3PE 403 E 1 HETATM 37 C C24 3PE . . . LA 3 144.311 89.996 128.18 1 107.83 ? C24 3PE 403 E 1 HETATM 38 C C25 3PE . . . LA 3 143.878 88.59 127.844 1 107.83 ? C25 3PE 403 E 1 HETATM 39 C C26 3PE . . . LA 3 144.889 87.807 127.046 1 107.83 ? C26 3PE 403 E 1 HETATM 40 C C27 3PE . . . LA 3 144.796 88.014 125.555 1 107.83 ? C27 3PE 403 E 1 HETATM 41 C C28 3PE . . . LA 3 144.67 86.737 124.759 1 107.83 ? C28 3PE 403 E 1 HETATM 42 C C29 3PE . . . LA 3 144.359 85.519 125.592 1 107.83 ? C29 3PE 403 E 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 42 #