data_6WBF
#
_model_server_result.job_id            EHzwavQItl8dlxpntbE-WA 
_model_server_result.datetime_utc      '2024-11-05 04:09:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6wbf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":403}' 
#
_entry.id    6WBF 
#
_exptl.entry_id    6WBF 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              748.065 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-Distearoyl-sn-glycerophosphoethanolamine 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6WBF 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6WBF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 Q N N 
? 3 X N N 
? 3 EA N N 
? 3 LA N N 
? 3 SA N N 
? 3 ZA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 265 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 84 A CYS 84 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf3 B SG CYS 66 B CYS 66 1_555 B SG CYS 265 B CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 B SG CYS 84 B CYS 84 1_555 B SG CYS 246 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf5 C SG CYS 66 C CYS 66 1_555 C SG CYS 265 C CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 C SG CYS 84 C CYS 84 1_555 C SG CYS 246 C CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf7 D SG CYS 66 D CYS 66 1_555 D SG CYS 265 D CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf8 D SG CYS 84 D CYS 84 1_555 D SG CYS 246 D CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf9 E SG CYS 66 E CYS 66 1_555 E SG CYS 265 E CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf10 E SG CYS 84 E CYS 84 1_555 E SG CYS 246 E CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf11 F SG CYS 66 F CYS 66 1_555 F SG CYS 265 F CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf12 F SG CYS 84 F CYS 84 1_555 F SG CYS 246 F CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf13 G SG CYS 66 G CYS 66 1_555 G SG CYS 265 G CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf14 G SG CYS 84 G CYS 84 1_555 G SG CYS 246 G CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
covale ? covale1 A ND2 ASN 255 A ASN 255 1_555 N C1 NAG . A NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale2 B ND2 ASN 255 B ASN 255 1_555 U C1 NAG . B NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale3 C ND2 ASN 255 C ASN 255 1_555 BA C1 NAG . C NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale4 D ND2 ASN 255 D ASN 255 1_555 IA C1 NAG . D NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale5 E ND2 ASN 255 E ASN 255 1_555 PA C1 NAG . E NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale6 F ND2 ASN 255 F ASN 255 1_555 WA C1 NAG . F NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale7 G ND2 ASN 255 G ASN 255 1_555 DB C1 NAG . G NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
#
_chem_comp.formula           'C41 H82 N O8 P' 
_chem_comp.formula_weight    748.065 
_chem_comp.id                3PE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-Distearoyl-sn-glycerophosphoethanolamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-SN-PHOSPHATIDYLETHANOLAMINE;1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE 
#
_atom_sites.entry_id                     6WBF 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 2 PTY A 1 401 401 PTY PTY . 
I 2 PTY A 1 402 402 PTY PTY . 
J 3 3PE A 1 403 403 3PE PEH . 
K 4 DGA A 1 404 404 DGA DGA . 
L 5 CLR A 1 405 405 CLR CLR . 
M 5 CLR A 1 406 406 CLR CLR . 
N 6 NAG A 1 407 501 NAG NAG . 
O 2 PTY B 1 401 401 PTY PTY . 
P 2 PTY B 1 402 402 PTY PTY . 
Q 3 3PE B 1 403 403 3PE PEH . 
R 4 DGA B 1 404 404 DGA DGA . 
S 5 CLR B 1 405 405 CLR CLR . 
T 5 CLR B 1 406 406 CLR CLR . 
U 6 NAG B 1 407 501 NAG NAG . 
V 2 PTY C 1 401 401 PTY PTY . 
W 2 PTY C 1 402 402 PTY PTY . 
X 3 3PE C 1 403 403 3PE PEH . 
Y 4 DGA C 1 404 404 DGA DGA . 
Z 5 CLR C 1 405 405 CLR CLR . 
AA 5 CLR C 1 406 406 CLR CLR . 
BA 6 NAG C 1 407 501 NAG NAG . 
CA 2 PTY D 1 401 401 PTY PTY . 
DA 2 PTY D 1 402 402 PTY PTY . 
EA 3 3PE D 1 403 403 3PE PEH . 
FA 4 DGA D 1 404 404 DGA DGA . 
GA 5 CLR D 1 405 405 CLR CLR . 
HA 5 CLR D 1 406 406 CLR CLR . 
IA 6 NAG D 1 407 501 NAG NAG . 
JA 2 PTY E 1 401 401 PTY PTY . 
KA 2 PTY E 1 402 402 PTY PTY . 
LA 3 3PE E 1 403 403 3PE PEH . 
MA 4 DGA E 1 404 404 DGA DGA . 
NA 5 CLR E 1 405 405 CLR CLR . 
OA 5 CLR E 1 406 406 CLR CLR . 
PA 6 NAG E 1 407 501 NAG NAG . 
QA 2 PTY F 1 401 401 PTY PTY . 
RA 2 PTY F 1 402 402 PTY PTY . 
SA 3 3PE F 1 403 403 3PE PEH . 
TA 4 DGA F 1 404 404 DGA DGA . 
UA 5 CLR F 1 405 405 CLR CLR . 
VA 5 CLR F 1 406 406 CLR CLR . 
WA 6 NAG F 1 407 501 NAG NAG . 
XA 2 PTY G 1 401 401 PTY PTY . 
YA 2 PTY G 1 402 402 PTY PTY . 
ZA 3 3PE G 1 403 403 3PE PEH . 
AB 4 DGA G 1 404 404 DGA DGA . 
BB 5 CLR G 1 405 405 CLR CLR . 
CB 5 CLR G 1 406 406 CLR CLR . 
DB 6 NAG G 1 407 501 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 3PE . . . Q 3 121.457 159.616 133.891 1 107.83 ? P 3PE 403 B 1 
HETATM 2 N N 3PE . . . Q 3 121.226 159.866 137.781 1 107.83 ? N 3PE 403 B 1 
HETATM 3 O O11 3PE . . . Q 3 120.32 159.727 132.762 1 107.83 ? O11 3PE 403 B 1 
HETATM 4 O O12 3PE . . . Q 3 121.777 158.161 134.092 1 107.83 ? O12 3PE 403 B 1 
HETATM 5 O O13 3PE . . . Q 3 120.707 160.146 135.208 1 107.83 ? O13 3PE 403 B 1 
HETATM 6 O O14 3PE . . . Q 3 122.554 160.587 133.553 1 107.83 ? O14 3PE 403 B 1 
HETATM 7 C C11 3PE . . . Q 3 119.766 159.273 135.891 1 107.83 ? C11 3PE 403 B 1 
HETATM 8 C C12 3PE . . . Q 3 120.345 158.844 137.213 1 107.83 ? C12 3PE 403 B 1 
HETATM 9 C C1 3PE . . . Q 3 119.075 158.995 132.931 1 107.83 ? C1 3PE 403 B 1 
HETATM 10 C C2 3PE . . . Q 3 118.734 158.266 131.651 1 107.83 ? C2 3PE 403 B 1 
HETATM 11 C C3 3PE . . . Q 3 117.936 157 131.87 1 107.83 ? C3 3PE 403 B 1 
HETATM 12 O O31 3PE . . . Q 3 117.647 156.409 130.584 1 107.83 ? O31 3PE 403 B 1 
HETATM 13 O O32 3PE . . . Q 3 117.041 154.519 131.601 1 107.83 ? O32 3PE 403 B 1 
HETATM 14 C C31 3PE . . . Q 3 117.292 155.128 130.595 1 107.83 ? C31 3PE 403 B 1 
HETATM 15 C C32 3PE . . . Q 3 117.248 154.556 129.204 1 107.83 ? C32 3PE 403 B 1 
HETATM 16 C C33 3PE . . . Q 3 116.75 153.146 129.157 1 107.83 ? C33 3PE 403 B 1 
HETATM 17 C C34 3PE . . . Q 3 115.587 152.972 128.195 1 107.83 ? C34 3PE 403 B 1 
HETATM 18 C C35 3PE . . . Q 3 115.994 152.565 126.8 1 107.83 ? C35 3PE 403 B 1 
HETATM 19 C C36 3PE . . . Q 3 114.838 152.222 125.891 1 107.83 ? C36 3PE 403 B 1 
HETATM 20 C C37 3PE . . . Q 3 114.727 153.102 124.669 1 107.83 ? C37 3PE 403 B 1 
HETATM 21 C C38 3PE . . . Q 3 113.88 154.335 124.868 1 107.83 ? C38 3PE 403 B 1 
HETATM 22 C C39 3PE . . . Q 3 112.53 154.275 124.196 1 107.83 ? C39 3PE 403 B 1 
HETATM 23 C C3A 3PE . . . Q 3 111.626 155.44 124.516 1 107.83 ? C3A 3PE 403 B 1 
HETATM 24 C C3B 3PE . . . Q 3 110.285 155.045 125.083 1 107.83 ? C3B 3PE 403 B 1 
HETATM 25 C C3C 3PE . . . Q 3 109.389 156.211 125.426 1 107.83 ? C3C 3PE 403 B 1 
HETATM 26 C C3D 3PE . . . Q 3 109.253 156.478 126.905 1 107.83 ? C3D 3PE 403 B 1 
HETATM 27 C C3E 3PE . . . Q 3 108.954 157.917 127.248 1 107.83 ? C3E 3PE 403 B 1 
HETATM 28 C C3F 3PE . . . Q 3 108.683 158.159 128.713 1 107.83 ? C3F 3PE 403 B 1 
HETATM 29 C C3G 3PE . . . Q 3 108.753 159.608 129.126 1 107.83 ? C3G 3PE 403 B 1 
HETATM 30 C C3H 3PE . . . Q 3 109.211 159.827 130.545 1 107.83 ? C3H 3PE 403 B 1 
HETATM 31 C C3I 3PE . . . Q 3 109.038 161.249 131.029 1 107.83 ? C3I 3PE 403 B 1 
HETATM 32 O O21 3PE . . . Q 3 117.979 159.156 130.784 1 107.83 ? O21 3PE 403 B 1 
HETATM 33 O O22 3PE . . . Q 3 118.367 161.343 130.967 1 107.83 ? O22 3PE 403 B 1 
HETATM 34 C C21 3PE . . . Q 3 118.56 160.301 130.399 1 107.83 ? C21 3PE 403 B 1 
HETATM 35 C C22 3PE . . . Q 3 119.455 160.131 129.204 1 107.83 ? C22 3PE 403 B 1 
HETATM 36 C C23 3PE . . . Q 3 118.904 160.748 127.958 1 107.83 ? C23 3PE 403 B 1 
HETATM 37 C C24 3PE . . . Q 3 118.395 162.161 128.184 1 107.83 ? C24 3PE 403 B 1 
HETATM 38 C C25 3PE . . . Q 3 119.394 163.24 127.848 1 107.83 ? C25 3PE 403 B 1 
HETATM 39 C C26 3PE . . . Q 3 118.824 164.385 127.049 1 107.83 ? C26 3PE 403 B 1 
HETATM 40 C C27 3PE . . . Q 3 118.819 164.158 125.558 1 107.83 ? C27 3PE 403 B 1 
HETATM 41 C C28 3PE . . . Q 3 119.485 165.253 124.763 1 107.83 ? C28 3PE 403 B 1 
HETATM 42 C C29 3PE . . . Q 3 120.293 166.217 125.596 1 107.83 ? C29 3PE 403 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           42 
#