data_6WBF # _model_server_result.job_id Fhv6d6Heee5svnaYZhK7DQ _model_server_result.datetime_utc '2024-12-22 07:52:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wbf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":405}' # _entry.id 6WBF # _exptl.entry_id 6WBF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WBF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WBF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 L N N ? 5 M N N ? 5 S N N ? 5 T N N ? 5 Z N N ? 5 AA N N ? 5 GA N N ? 5 HA N N ? 5 NA N N ? 5 OA N N ? 5 UA N N ? 5 VA N N ? 5 BB N N ? 5 CB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 265 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 84 A CYS 84 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 B SG CYS 66 B CYS 66 1_555 B SG CYS 265 B CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 B SG CYS 84 B CYS 84 1_555 B SG CYS 246 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 C SG CYS 66 C CYS 66 1_555 C SG CYS 265 C CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 C SG CYS 84 C CYS 84 1_555 C SG CYS 246 C CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 D SG CYS 66 D CYS 66 1_555 D SG CYS 265 D CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 D SG CYS 84 D CYS 84 1_555 D SG CYS 246 D CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf9 E SG CYS 66 E CYS 66 1_555 E SG CYS 265 E CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 E SG CYS 84 E CYS 84 1_555 E SG CYS 246 E CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf11 F SG CYS 66 F CYS 66 1_555 F SG CYS 265 F CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf12 F SG CYS 84 F CYS 84 1_555 F SG CYS 246 F CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf13 G SG CYS 66 G CYS 66 1_555 G SG CYS 265 G CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf14 G SG CYS 84 G CYS 84 1_555 G SG CYS 246 G CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 255 A ASN 255 1_555 N C1 NAG . A NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 B ND2 ASN 255 B ASN 255 1_555 U C1 NAG . B NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 C ND2 ASN 255 C ASN 255 1_555 BA C1 NAG . C NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 D ND2 ASN 255 D ASN 255 1_555 IA C1 NAG . D NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 E ND2 ASN 255 E ASN 255 1_555 PA C1 NAG . E NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale6 F ND2 ASN 255 F ASN 255 1_555 WA C1 NAG . F NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale7 G ND2 ASN 255 G ASN 255 1_555 DB C1 NAG . G NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 202 n n C1 C10 CLR sing 203 n n C1 H11 CLR sing 204 n n C1 H12 CLR sing 205 n n C2 C3 CLR sing 206 n n C2 H21 CLR sing 207 n n C2 H22 CLR sing 208 n n C3 C4 CLR sing 209 n n C3 O1 CLR sing 210 n n C3 H3 CLR sing 211 n n C4 C5 CLR sing 212 n n C4 H41 CLR sing 213 n n C4 H42 CLR sing 214 n n C5 C6 CLR doub 215 n n C5 C10 CLR sing 216 n n C6 C7 CLR sing 217 n n C6 H6 CLR sing 218 n n C7 C8 CLR sing 219 n n C7 H71 CLR sing 220 n n C7 H72 CLR sing 221 n n C8 C9 CLR sing 222 n n C8 C14 CLR sing 223 n n C8 H8 CLR sing 224 n n C9 C10 CLR sing 225 n n C9 C11 CLR sing 226 n n C9 H9 CLR sing 227 n n C10 C19 CLR sing 228 n n C11 C12 CLR sing 229 n n C11 H111 CLR sing 230 n n C11 H112 CLR sing 231 n n C12 C13 CLR sing 232 n n C12 H121 CLR sing 233 n n C12 H122 CLR sing 234 n n C13 C14 CLR sing 235 n n C13 C17 CLR sing 236 n n C13 C18 CLR sing 237 n n C14 C15 CLR sing 238 n n C14 H14 CLR sing 239 n n C15 C16 CLR sing 240 n n C15 H151 CLR sing 241 n n C15 H152 CLR sing 242 n n C16 C17 CLR sing 243 n n C16 H161 CLR sing 244 n n C16 H162 CLR sing 245 n n C17 C20 CLR sing 246 n n C17 H17 CLR sing 247 n n C18 H181 CLR sing 248 n n C18 H182 CLR sing 249 n n C18 H183 CLR sing 250 n n C19 H191 CLR sing 251 n n C19 H192 CLR sing 252 n n C19 H193 CLR sing 253 n n C20 C21 CLR sing 254 n n C20 C22 CLR sing 255 n n C20 H20 CLR sing 256 n n C21 H211 CLR sing 257 n n C21 H212 CLR sing 258 n n C21 H213 CLR sing 259 n n C22 C23 CLR sing 260 n n C22 H221 CLR sing 261 n n C22 H222 CLR sing 262 n n C23 C24 CLR sing 263 n n C23 H231 CLR sing 264 n n C23 H232 CLR sing 265 n n C24 C25 CLR sing 266 n n C24 H241 CLR sing 267 n n C24 H242 CLR sing 268 n n C25 C26 CLR sing 269 n n C25 C27 CLR sing 270 n n C25 H25 CLR sing 271 n n C26 H261 CLR sing 272 n n C26 H262 CLR sing 273 n n C26 H263 CLR sing 274 n n C27 H271 CLR sing 275 n n C27 H272 CLR sing 276 n n C27 H273 CLR sing 277 n n O1 H1 CLR sing 278 n n # _atom_sites.entry_id 6WBF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 PTY A 1 401 401 PTY PTY . I 2 PTY A 1 402 402 PTY PTY . J 3 3PE A 1 403 403 3PE PEH . K 4 DGA A 1 404 404 DGA DGA . L 5 CLR A 1 405 405 CLR CLR . M 5 CLR A 1 406 406 CLR CLR . N 6 NAG A 1 407 501 NAG NAG . O 2 PTY B 1 401 401 PTY PTY . P 2 PTY B 1 402 402 PTY PTY . Q 3 3PE B 1 403 403 3PE PEH . R 4 DGA B 1 404 404 DGA DGA . S 5 CLR B 1 405 405 CLR CLR . T 5 CLR B 1 406 406 CLR CLR . U 6 NAG B 1 407 501 NAG NAG . V 2 PTY C 1 401 401 PTY PTY . W 2 PTY C 1 402 402 PTY PTY . X 3 3PE C 1 403 403 3PE PEH . Y 4 DGA C 1 404 404 DGA DGA . Z 5 CLR C 1 405 405 CLR CLR . AA 5 CLR C 1 406 406 CLR CLR . BA 6 NAG C 1 407 501 NAG NAG . CA 2 PTY D 1 401 401 PTY PTY . DA 2 PTY D 1 402 402 PTY PTY . EA 3 3PE D 1 403 403 3PE PEH . FA 4 DGA D 1 404 404 DGA DGA . GA 5 CLR D 1 405 405 CLR CLR . HA 5 CLR D 1 406 406 CLR CLR . IA 6 NAG D 1 407 501 NAG NAG . JA 2 PTY E 1 401 401 PTY PTY . KA 2 PTY E 1 402 402 PTY PTY . LA 3 3PE E 1 403 403 3PE PEH . MA 4 DGA E 1 404 404 DGA DGA . NA 5 CLR E 1 405 405 CLR CLR . OA 5 CLR E 1 406 406 CLR CLR . PA 6 NAG E 1 407 501 NAG NAG . QA 2 PTY F 1 401 401 PTY PTY . RA 2 PTY F 1 402 402 PTY PTY . SA 3 3PE F 1 403 403 3PE PEH . TA 4 DGA F 1 404 404 DGA DGA . UA 5 CLR F 1 405 405 CLR CLR . VA 5 CLR F 1 406 406 CLR CLR . WA 6 NAG F 1 407 501 NAG NAG . XA 2 PTY G 1 401 401 PTY PTY . YA 2 PTY G 1 402 402 PTY PTY . ZA 3 3PE G 1 403 403 3PE PEH . AB 4 DGA G 1 404 404 DGA DGA . BB 5 CLR G 1 405 405 CLR CLR . CB 5 CLR G 1 406 406 CLR CLR . DB 6 NAG G 1 407 501 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . L 5 103.375 159.43 98.24 1 93.39 ? C1 CLR 405 A 1 HETATM 2 C C2 CLR . . . L 5 103.4 160.469 97.117 1 93.39 ? C2 CLR 405 A 1 HETATM 3 C C3 CLR . . . L 5 102.132 160.425 96.301 1 93.39 ? C3 CLR 405 A 1 HETATM 4 C C4 CLR . . . L 5 100.936 160.653 97.206 1 93.39 ? C4 CLR 405 A 1 HETATM 5 C C5 CLR . . . L 5 100.898 159.669 98.356 1 93.39 ? C5 CLR 405 A 1 HETATM 6 C C6 CLR . . . L 5 99.818 158.937 98.589 1 93.39 ? C6 CLR 405 A 1 HETATM 7 C C7 CLR . . . L 5 99.635 158.024 99.76 1 93.39 ? C7 CLR 405 A 1 HETATM 8 C C8 CLR . . . L 5 100.731 158.18 100.809 1 93.39 ? C8 CLR 405 A 1 HETATM 9 C C9 CLR . . . L 5 102.096 158.314 100.109 1 93.39 ? C9 CLR 405 A 1 HETATM 10 C C10 CLR . . . L 5 102.168 159.57 99.197 1 93.39 ? C10 CLR 405 A 1 HETATM 11 C C11 CLR . . . L 5 103.257 158.252 101.113 1 93.39 ? C11 CLR 405 A 1 HETATM 12 C C12 CLR . . . L 5 103.202 157.013 102.014 1 93.39 ? C12 CLR 405 A 1 HETATM 13 C C13 CLR . . . L 5 101.882 156.954 102.785 1 93.39 ? C13 CLR 405 A 1 HETATM 14 C C14 CLR . . . L 5 100.75 156.972 101.737 1 93.39 ? C14 CLR 405 A 1 HETATM 15 C C15 CLR . . . L 5 99.493 156.624 102.533 1 93.39 ? C15 CLR 405 A 1 HETATM 16 C C16 CLR . . . L 5 100.002 155.707 103.665 1 93.39 ? C16 CLR 405 A 1 HETATM 17 C C17 CLR . . . L 5 101.539 155.605 103.479 1 93.39 ? C17 CLR 405 A 1 HETATM 18 C C18 CLR . . . L 5 101.773 158.125 103.775 1 93.39 ? C18 CLR 405 A 1 HETATM 19 C C19 CLR . . . L 5 102.296 160.87 100.012 1 93.39 ? C19 CLR 405 A 1 HETATM 20 C C20 CLR . . . L 5 102.28 155.158 104.752 1 93.39 ? C20 CLR 405 A 1 HETATM 21 C C21 CLR . . . L 5 102.663 153.682 104.712 1 93.39 ? C21 CLR 405 A 1 HETATM 22 C C22 CLR . . . L 5 101.446 155.471 106.006 1 93.39 ? C22 CLR 405 A 1 HETATM 23 C C23 CLR . . . L 5 102.219 155.936 107.223 1 93.39 ? C23 CLR 405 A 1 HETATM 24 C C24 CLR . . . L 5 103.084 154.87 107.844 1 93.39 ? C24 CLR 405 A 1 HETATM 25 C C25 CLR . . . L 5 103.929 155.314 109.033 1 93.39 ? C25 CLR 405 A 1 HETATM 26 C C26 CLR . . . L 5 104.831 156.481 108.66 1 93.39 ? C26 CLR 405 A 1 HETATM 27 C C27 CLR . . . L 5 104.758 154.162 109.583 1 93.39 ? C27 CLR 405 A 1 HETATM 28 O O1 CLR . . . L 5 102.172 161.427 95.277 1 93.39 ? O1 CLR 405 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 66 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 28 #