data_6WBG # _model_server_result.job_id -rHEVK5frgb8KCbpJNBekw _model_server_result.datetime_utc '2024-12-21 15:11:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wbg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":402}' # _entry.id 6WBG # _exptl.entry_id 6WBG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 734.039 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WBG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WBG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 H N N ? 2 I N N ? 2 O N N ? 2 P N N ? 2 V N N ? 2 W N N ? 2 CA N N ? 2 DA N N ? 2 JA N N ? 2 KA N N ? 2 QA N N ? 2 RA N N ? 2 XA N N ? 2 YA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 265 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 84 A CYS 84 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 B SG CYS 66 B CYS 66 1_555 B SG CYS 265 B CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 B SG CYS 84 B CYS 84 1_555 B SG CYS 246 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 C SG CYS 66 C CYS 66 1_555 C SG CYS 265 C CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 C SG CYS 84 C CYS 84 1_555 C SG CYS 246 C CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 D SG CYS 66 D CYS 66 1_555 D SG CYS 265 D CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 D SG CYS 84 D CYS 84 1_555 D SG CYS 246 D CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 E SG CYS 66 E CYS 66 1_555 E SG CYS 265 E CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 E SG CYS 84 E CYS 84 1_555 E SG CYS 246 E CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf11 F SG CYS 66 F CYS 66 1_555 F SG CYS 265 F CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf12 F SG CYS 84 F CYS 84 1_555 F SG CYS 246 F CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf13 G SG CYS 66 G CYS 66 1_555 G SG CYS 265 G CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf14 G SG CYS 84 G CYS 84 1_555 G SG CYS 246 G CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 255 A ASN 255 1_555 N C1 NAG . A NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 B ND2 ASN 255 B ASN 255 1_555 U C1 NAG . B NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 C ND2 ASN 255 C ASN 255 1_555 BA C1 NAG . C NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 D ND2 ASN 255 D ASN 255 1_555 IA C1 NAG . D NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 E ND2 ASN 255 E ASN 255 1_555 PA C1 NAG . E NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale6 F ND2 ASN 255 F ASN 255 1_555 WA C1 NAG . F NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale7 G ND2 ASN 255 G ASN 255 1_555 DB C1 NAG . G NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O4 PTY sing 633 n n C1 C6 PTY sing 634 n n C1 HC11 PTY sing 635 n n C1 HC12 PTY sing 636 n n C2 C3 PTY sing 637 n n C2 N1 PTY sing 638 n n C2 HC21 PTY sing 639 n n C2 HC22 PTY sing 640 n n C3 O11 PTY sing 641 n n C3 HC31 PTY sing 642 n n C3 HC32 PTY sing 643 n n O4 C30 PTY sing 644 n n C5 C6 PTY sing 645 n n C5 O14 PTY sing 646 n n C5 HC51 PTY sing 647 n n C5 HC52 PTY sing 648 n n C6 O7 PTY sing 649 n n C6 HC6 PTY sing 650 n n O7 C8 PTY sing 651 n n C8 O10 PTY doub 652 n n C8 C11 PTY sing 653 n n C11 C12 PTY sing 654 n n C11 H111 PTY sing 655 n n C11 H112 PTY sing 656 n n C12 C13 PTY sing 657 n n C12 H121 PTY sing 658 n n C12 H122 PTY sing 659 n n C13 C14 PTY sing 660 n n C13 H131 PTY sing 661 n n C13 H132 PTY sing 662 n n C14 C15 PTY sing 663 n n C14 H141 PTY sing 664 n n C14 H142 PTY sing 665 n n C15 C16 PTY sing 666 n n C15 H151 PTY sing 667 n n C15 H152 PTY sing 668 n n C16 C17 PTY sing 669 n n C16 H161 PTY sing 670 n n C16 H162 PTY sing 671 n n C17 C18 PTY sing 672 n n C17 H171 PTY sing 673 n n C17 H172 PTY sing 674 n n C18 C19 PTY sing 675 n n C18 H181 PTY sing 676 n n C18 H182 PTY sing 677 n n C19 C20 PTY sing 678 n n C19 H191 PTY sing 679 n n C19 H192 PTY sing 680 n n C20 C21 PTY sing 681 n n C20 H201 PTY sing 682 n n C20 H202 PTY sing 683 n n C21 C22 PTY sing 684 n n C21 H211 PTY sing 685 n n C21 H212 PTY sing 686 n n C22 C23 PTY sing 687 n n C22 H221 PTY sing 688 n n C22 H222 PTY sing 689 n n C23 C24 PTY sing 690 n n C23 H231 PTY sing 691 n n C23 H232 PTY sing 692 n n C24 C25 PTY sing 693 n n C24 H241 PTY sing 694 n n C24 H242 PTY sing 695 n n C25 C26 PTY sing 696 n n C25 H251 PTY sing 697 n n C25 H252 PTY sing 698 n n C26 C27 PTY sing 699 n n C26 H261 PTY sing 700 n n C26 H262 PTY sing 701 n n C27 C28 PTY sing 702 n n C27 H271 PTY sing 703 n n C27 H272 PTY sing 704 n n C28 C29 PTY sing 705 n n C28 H281 PTY sing 706 n n C28 H282 PTY sing 707 n n C29 H291 PTY sing 708 n n C29 H292 PTY sing 709 n n C29 H293 PTY sing 710 n n C30 C31 PTY sing 711 n n C30 O30 PTY doub 712 n n C31 C32 PTY sing 713 n n C31 H311 PTY sing 714 n n C31 H312 PTY sing 715 n n C32 C33 PTY sing 716 n n C32 H321 PTY sing 717 n n C32 H322 PTY sing 718 n n C33 C34 PTY sing 719 n n C33 H331 PTY sing 720 n n C33 H332 PTY sing 721 n n C34 C35 PTY sing 722 n n C34 H341 PTY sing 723 n n C34 H342 PTY sing 724 n n C35 C36 PTY sing 725 n n C35 H351 PTY sing 726 n n C35 H352 PTY sing 727 n n C36 C37 PTY sing 728 n n C36 H361 PTY sing 729 n n C36 H362 PTY sing 730 n n C37 C38 PTY sing 731 n n C37 H371 PTY sing 732 n n C37 H372 PTY sing 733 n n C38 C39 PTY sing 734 n n C38 H381 PTY sing 735 n n C38 H382 PTY sing 736 n n C39 C40 PTY sing 737 n n C39 H391 PTY sing 738 n n C39 H392 PTY sing 739 n n C40 C41 PTY sing 740 n n C40 H401 PTY sing 741 n n C40 H402 PTY sing 742 n n C41 C42 PTY sing 743 n n C41 H411 PTY sing 744 n n C41 H412 PTY sing 745 n n C42 C43 PTY sing 746 n n C42 H421 PTY sing 747 n n C42 H422 PTY sing 748 n n C43 C44 PTY sing 749 n n C43 H431 PTY sing 750 n n C43 H432 PTY sing 751 n n C44 H441 PTY sing 752 n n C44 H442 PTY sing 753 n n C44 H443 PTY sing 754 n n P1 O11 PTY sing 755 n n P1 O12 PTY sing 756 n n P1 O13 PTY doub 757 n n P1 O14 PTY sing 758 n n O12 H12O PTY sing 759 n n N1 HN11 PTY sing 760 n n N1 HN12 PTY sing 761 n n # _atom_sites.entry_id 6WBG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 PTY A 1 401 401 PTY PTY . I 2 PTY A 1 402 402 PTY PTY . J 3 3PE A 1 403 403 3PE PEH . K 4 DGA A 1 404 404 DGA DGA . L 5 CLR A 1 405 405 CLR CLR . M 5 CLR A 1 406 406 CLR CLR . N 6 NAG A 1 407 501 NAG NAG . O 2 PTY B 1 401 401 PTY PTY . P 2 PTY B 1 402 402 PTY PTY . Q 3 3PE B 1 403 403 3PE PEH . R 4 DGA B 1 404 404 DGA DGA . S 5 CLR B 1 405 405 CLR CLR . T 5 CLR B 1 406 406 CLR CLR . U 6 NAG B 1 407 501 NAG NAG . V 2 PTY C 1 401 401 PTY PTY . W 2 PTY C 1 402 402 PTY PTY . X 3 3PE C 1 403 403 3PE PEH . Y 4 DGA C 1 404 404 DGA DGA . Z 5 CLR C 1 405 405 CLR CLR . AA 5 CLR C 1 406 406 CLR CLR . BA 6 NAG C 1 407 501 NAG NAG . CA 2 PTY D 1 401 401 PTY PTY . DA 2 PTY D 1 402 402 PTY PTY . EA 3 3PE D 1 403 403 3PE PEH . FA 4 DGA D 1 404 404 DGA DGA . GA 5 CLR D 1 405 405 CLR CLR . HA 5 CLR D 1 406 406 CLR CLR . IA 6 NAG D 1 407 501 NAG NAG . JA 2 PTY E 1 401 401 PTY PTY . KA 2 PTY E 1 402 402 PTY PTY . LA 3 3PE E 1 403 403 3PE PEH . MA 4 DGA E 1 404 404 DGA DGA . NA 5 CLR E 1 405 405 CLR CLR . OA 5 CLR E 1 406 406 CLR CLR . PA 6 NAG E 1 407 501 NAG NAG . QA 2 PTY F 1 401 401 PTY PTY . RA 2 PTY F 1 402 402 PTY PTY . SA 3 3PE F 1 403 403 3PE PEH . TA 4 DGA F 1 404 404 DGA DGA . UA 5 CLR F 1 405 405 CLR CLR . VA 5 CLR F 1 406 406 CLR CLR . WA 6 NAG F 1 407 501 NAG NAG . XA 2 PTY G 1 401 401 PTY PTY . YA 2 PTY G 1 402 402 PTY PTY . ZA 3 3PE G 1 403 403 3PE PEH . AB 4 DGA G 1 404 404 DGA DGA . BB 5 CLR G 1 405 405 CLR CLR . CB 5 CLR G 1 406 406 CLR CLR . DB 6 NAG G 1 407 501 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . W 2 146.638 149.654 99.749 1 20 ? C1 PTY 402 C 1 HETATM 2 C C2 PTY . . . W 2 151.643 149.383 97.22 1 20 ? C2 PTY 402 C 1 HETATM 3 C C3 PTY . . . W 2 151.514 147.895 97.418 1 20 ? C3 PTY 402 C 1 HETATM 4 O O4 PTY . . . W 2 145.289 149.863 100.217 1 20 ? O4 PTY 402 C 1 HETATM 5 C C5 PTY . . . W 2 147.892 149.015 97.651 1 20 ? C5 PTY 402 C 1 HETATM 6 C C6 PTY . . . W 2 146.62 149.585 98.238 1 20 ? C6 PTY 402 C 1 HETATM 7 O O7 PTY . . . W 2 146.433 150.923 97.7 1 20 ? O7 PTY 402 C 1 HETATM 8 C C8 PTY . . . W 2 145.906 151.86 98.503 1 20 ? C8 PTY 402 C 1 HETATM 9 O O10 PTY . . . W 2 144.718 152.012 98.617 1 20 ? O10 PTY 402 C 1 HETATM 10 C C11 PTY . . . W 2 146.946 152.672 99.223 1 20 ? C11 PTY 402 C 1 HETATM 11 C C12 PTY . . . W 2 148.337 152.44 98.719 1 20 ? C12 PTY 402 C 1 HETATM 12 C C13 PTY . . . W 2 149.219 151.735 99.735 1 20 ? C13 PTY 402 C 1 HETATM 13 C C14 PTY . . . W 2 149.159 152.324 101.123 1 20 ? C14 PTY 402 C 1 HETATM 14 C C15 PTY . . . W 2 149.464 151.34 102.226 1 20 ? C15 PTY 402 C 1 HETATM 15 C C16 PTY . . . W 2 149.259 151.886 103.617 1 20 ? C16 PTY 402 C 1 HETATM 16 C C17 PTY . . . W 2 147.855 151.721 104.145 1 20 ? C17 PTY 402 C 1 HETATM 17 C C18 PTY . . . W 2 147.785 151.281 105.587 1 20 ? C18 PTY 402 C 1 HETATM 18 C C19 PTY . . . W 2 147.032 152.23 106.488 1 20 ? C19 PTY 402 C 1 HETATM 19 C C20 PTY . . . W 2 147.025 151.828 107.942 1 20 ? C20 PTY 402 C 1 HETATM 20 C C21 PTY . . . W 2 146.332 152.811 108.854 1 20 ? C21 PTY 402 C 1 HETATM 21 C C30 PTY . . . W 2 144.975 149.29 101.374 1 20 ? C30 PTY 402 C 1 HETATM 22 C C31 PTY . . . W 2 144.592 150.309 102.408 1 20 ? C31 PTY 402 C 1 HETATM 23 O O30 PTY . . . W 2 145.001 148.101 101.549 1 20 ? O30 PTY 402 C 1 HETATM 24 C C32 PTY . . . W 2 143.432 149.889 103.254 1 20 ? C32 PTY 402 C 1 HETATM 25 C C33 PTY . . . W 2 143.491 150.467 104.656 1 20 ? C33 PTY 402 C 1 HETATM 26 C C34 PTY . . . W 2 143.198 149.471 105.75 1 20 ? C34 PTY 402 C 1 HETATM 27 C C35 PTY . . . W 2 143.38 150.013 107.145 1 20 ? C35 PTY 402 C 1 HETATM 28 C C36 PTY . . . W 2 142.09 150.326 107.861 1 20 ? C36 PTY 402 C 1 HETATM 29 C C37 PTY . . . W 2 142.052 149.864 109.297 1 20 ? C37 PTY 402 C 1 HETATM 30 C C38 PTY . . . W 2 143.357 150.03 110.035 1 20 ? C38 PTY 402 C 1 HETATM 31 C C39 PTY . . . W 2 143.31 149.6 111.481 1 20 ? C39 PTY 402 C 1 HETATM 32 C C40 PTY . . . W 2 141.941 149.19 111.962 1 20 ? C40 PTY 402 C 1 HETATM 33 C C41 PTY . . . W 2 141.864 148.901 113.44 1 20 ? C41 PTY 402 C 1 HETATM 34 P P1 PTY . . . W 2 149.195 146.736 97.919 1 20 ? P1 PTY 402 C 1 HETATM 35 O O11 PTY . . . W 2 150.232 147.434 96.912 1 20 ? O11 PTY 402 C 1 HETATM 36 O O12 PTY . . . W 2 149.658 147.007 99.324 1 20 ? O12 PTY 402 C 1 HETATM 37 O O13 PTY . . . W 2 148.969 145.321 97.465 1 20 ? O13 PTY 402 C 1 HETATM 38 O O14 PTY . . . W 2 147.84 147.563 97.673 1 20 ? O14 PTY 402 C 1 HETATM 39 N N1 PTY . . . W 2 152.439 150.016 98.274 1 20 ? N1 PTY 402 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 39 #