data_6WBG # _model_server_result.job_id e_2vZoBu43YgF90eYrQwxg _model_server_result.datetime_utc '2024-11-12 23:43:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wbg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"PA","auth_seq_id":407}' # _entry.id 6WBG # _exptl.entry_id 6WBG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WBG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WBG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 N N N ? 6 U N N ? 6 BA N N ? 6 IA N N ? 6 PA N N ? 6 WA N N ? 6 DB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 265 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 84 A CYS 84 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 B SG CYS 66 B CYS 66 1_555 B SG CYS 265 B CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 B SG CYS 84 B CYS 84 1_555 B SG CYS 246 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 C SG CYS 66 C CYS 66 1_555 C SG CYS 265 C CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 C SG CYS 84 C CYS 84 1_555 C SG CYS 246 C CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 D SG CYS 66 D CYS 66 1_555 D SG CYS 265 D CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 D SG CYS 84 D CYS 84 1_555 D SG CYS 246 D CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 E SG CYS 66 E CYS 66 1_555 E SG CYS 265 E CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 E SG CYS 84 E CYS 84 1_555 E SG CYS 246 E CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf11 F SG CYS 66 F CYS 66 1_555 F SG CYS 265 F CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf12 F SG CYS 84 F CYS 84 1_555 F SG CYS 246 F CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf13 G SG CYS 66 G CYS 66 1_555 G SG CYS 265 G CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf14 G SG CYS 84 G CYS 84 1_555 G SG CYS 246 G CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 255 A ASN 255 1_555 N C1 NAG . A NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 B ND2 ASN 255 B ASN 255 1_555 U C1 NAG . B NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 C ND2 ASN 255 C ASN 255 1_555 BA C1 NAG . C NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 D ND2 ASN 255 D ASN 255 1_555 IA C1 NAG . D NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 E ND2 ASN 255 E ASN 255 1_555 PA C1 NAG . E NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale6 F ND2 ASN 255 F ASN 255 1_555 WA C1 NAG . F NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale7 G ND2 ASN 255 G ASN 255 1_555 DB C1 NAG . G NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6WBG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 PTY A 1 401 401 PTY PTY . I 2 PTY A 1 402 402 PTY PTY . J 3 3PE A 1 403 403 3PE PEH . K 4 DGA A 1 404 404 DGA DGA . L 5 CLR A 1 405 405 CLR CLR . M 5 CLR A 1 406 406 CLR CLR . N 6 NAG A 1 407 501 NAG NAG . O 2 PTY B 1 401 401 PTY PTY . P 2 PTY B 1 402 402 PTY PTY . Q 3 3PE B 1 403 403 3PE PEH . R 4 DGA B 1 404 404 DGA DGA . S 5 CLR B 1 405 405 CLR CLR . T 5 CLR B 1 406 406 CLR CLR . U 6 NAG B 1 407 501 NAG NAG . V 2 PTY C 1 401 401 PTY PTY . W 2 PTY C 1 402 402 PTY PTY . X 3 3PE C 1 403 403 3PE PEH . Y 4 DGA C 1 404 404 DGA DGA . Z 5 CLR C 1 405 405 CLR CLR . AA 5 CLR C 1 406 406 CLR CLR . BA 6 NAG C 1 407 501 NAG NAG . CA 2 PTY D 1 401 401 PTY PTY . DA 2 PTY D 1 402 402 PTY PTY . EA 3 3PE D 1 403 403 3PE PEH . FA 4 DGA D 1 404 404 DGA DGA . GA 5 CLR D 1 405 405 CLR CLR . HA 5 CLR D 1 406 406 CLR CLR . IA 6 NAG D 1 407 501 NAG NAG . JA 2 PTY E 1 401 401 PTY PTY . KA 2 PTY E 1 402 402 PTY PTY . LA 3 3PE E 1 403 403 3PE PEH . MA 4 DGA E 1 404 404 DGA DGA . NA 5 CLR E 1 405 405 CLR CLR . OA 5 CLR E 1 406 406 CLR CLR . PA 6 NAG E 1 407 501 NAG NAG . QA 2 PTY F 1 401 401 PTY PTY . RA 2 PTY F 1 402 402 PTY PTY . SA 3 3PE F 1 403 403 3PE PEH . TA 4 DGA F 1 404 404 DGA DGA . UA 5 CLR F 1 405 405 CLR CLR . VA 5 CLR F 1 406 406 CLR CLR . WA 6 NAG F 1 407 501 NAG NAG . XA 2 PTY G 1 401 401 PTY PTY . YA 2 PTY G 1 402 402 PTY PTY . ZA 3 3PE G 1 403 403 3PE PEH . AB 4 DGA G 1 404 404 DGA DGA . BB 5 CLR G 1 405 405 CLR CLR . CB 5 CLR G 1 406 406 CLR CLR . DB 6 NAG G 1 407 501 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . PA 6 107.019 96.184 73.283 1 116.74 ? C1 NAG 407 E 1 HETATM 2 C C2 NAG . . . PA 6 105.758 95.572 73.883 1 116.74 ? C2 NAG 407 E 1 HETATM 3 C C3 NAG . . . PA 6 105.87 94.053 73.875 1 116.74 ? C3 NAG 407 E 1 HETATM 4 C C4 NAG . . . PA 6 106.168 93.562 72.464 1 116.74 ? C4 NAG 407 E 1 HETATM 5 C C5 NAG . . . PA 6 107.37 94.301 71.885 1 116.74 ? C5 NAG 407 E 1 HETATM 6 C C6 NAG . . . PA 6 107.63 93.886 70.442 1 116.74 ? C6 NAG 407 E 1 HETATM 7 C C7 NAG . . . PA 6 104.79 97.136 75.456 1 116.74 ? C7 NAG 407 E 1 HETATM 8 C C8 NAG . . . PA 6 104.9 97.733 76.827 1 116.74 ? C8 NAG 407 E 1 HETATM 9 N N2 NAG . . . PA 6 105.538 96.061 75.23 1 116.74 ? N2 NAG 407 E 1 HETATM 10 O O3 NAG . . . PA 6 104.642 93.475 74.331 1 116.74 ? O3 NAG 407 E 1 HETATM 11 O O4 NAG . . . PA 6 106.446 92.159 72.498 1 116.74 ? O4 NAG 407 E 1 HETATM 12 O O5 NAG . . . PA 6 107.155 95.713 71.939 1 116.74 ? O5 NAG 407 E 1 HETATM 13 O O6 NAG . . . PA 6 107.957 92.492 70.401 1 116.74 ? O6 NAG 407 E 1 HETATM 14 O O7 NAG . . . PA 6 104.062 97.61 74.598 1 116.74 ? O7 NAG 407 E 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #