data_6WBM # _model_server_result.job_id '_D6Byx5LvMITJBHNe6Y3CQ' _model_server_result.datetime_utc '2024-11-08 13:42:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wbm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":402}' # _entry.id 6WBM # _exptl.entry_id 6WBM _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 734.039 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WBM _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WBM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 H N N ? 2 I N N ? 2 O N N ? 2 P N N ? 2 U N N ? 2 V N N ? 2 AA N N ? 2 BA N N ? 2 GA N N ? 2 HA N N ? 2 MA N N ? 2 NA N N ? 2 SA N N ? 2 TA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 265 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 84 A CYS 84 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 66 B CYS 66 1_555 B SG CYS 265 B CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 84 B CYS 84 1_555 B SG CYS 246 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 C SG CYS 66 C CYS 66 1_555 C SG CYS 265 C CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 C SG CYS 84 C CYS 84 1_555 C SG CYS 246 C CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 D SG CYS 66 D CYS 66 1_555 D SG CYS 265 D CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 D SG CYS 84 D CYS 84 1_555 D SG CYS 246 D CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 E SG CYS 66 E CYS 66 1_555 E SG CYS 265 E CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 E SG CYS 84 E CYS 84 1_555 E SG CYS 246 E CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 F SG CYS 66 F CYS 66 1_555 F SG CYS 265 F CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 F SG CYS 84 F CYS 84 1_555 F SG CYS 246 F CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 G SG CYS 66 G CYS 66 1_555 G SG CYS 265 G CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 G SG CYS 84 G CYS 84 1_555 G SG CYS 246 G CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O4 PTY sing 603 n n C1 C6 PTY sing 604 n n C1 HC11 PTY sing 605 n n C1 HC12 PTY sing 606 n n C2 C3 PTY sing 607 n n C2 N1 PTY sing 608 n n C2 HC21 PTY sing 609 n n C2 HC22 PTY sing 610 n n C3 O11 PTY sing 611 n n C3 HC31 PTY sing 612 n n C3 HC32 PTY sing 613 n n O4 C30 PTY sing 614 n n C5 C6 PTY sing 615 n n C5 O14 PTY sing 616 n n C5 HC51 PTY sing 617 n n C5 HC52 PTY sing 618 n n C6 O7 PTY sing 619 n n C6 HC6 PTY sing 620 n n O7 C8 PTY sing 621 n n C8 O10 PTY doub 622 n n C8 C11 PTY sing 623 n n C11 C12 PTY sing 624 n n C11 H111 PTY sing 625 n n C11 H112 PTY sing 626 n n C12 C13 PTY sing 627 n n C12 H121 PTY sing 628 n n C12 H122 PTY sing 629 n n C13 C14 PTY sing 630 n n C13 H131 PTY sing 631 n n C13 H132 PTY sing 632 n n C14 C15 PTY sing 633 n n C14 H141 PTY sing 634 n n C14 H142 PTY sing 635 n n C15 C16 PTY sing 636 n n C15 H151 PTY sing 637 n n C15 H152 PTY sing 638 n n C16 C17 PTY sing 639 n n C16 H161 PTY sing 640 n n C16 H162 PTY sing 641 n n C17 C18 PTY sing 642 n n C17 H171 PTY sing 643 n n C17 H172 PTY sing 644 n n C18 C19 PTY sing 645 n n C18 H181 PTY sing 646 n n C18 H182 PTY sing 647 n n C19 C20 PTY sing 648 n n C19 H191 PTY sing 649 n n C19 H192 PTY sing 650 n n C20 C21 PTY sing 651 n n C20 H201 PTY sing 652 n n C20 H202 PTY sing 653 n n C21 C22 PTY sing 654 n n C21 H211 PTY sing 655 n n C21 H212 PTY sing 656 n n C22 C23 PTY sing 657 n n C22 H221 PTY sing 658 n n C22 H222 PTY sing 659 n n C23 C24 PTY sing 660 n n C23 H231 PTY sing 661 n n C23 H232 PTY sing 662 n n C24 C25 PTY sing 663 n n C24 H241 PTY sing 664 n n C24 H242 PTY sing 665 n n C25 C26 PTY sing 666 n n C25 H251 PTY sing 667 n n C25 H252 PTY sing 668 n n C26 C27 PTY sing 669 n n C26 H261 PTY sing 670 n n C26 H262 PTY sing 671 n n C27 C28 PTY sing 672 n n C27 H271 PTY sing 673 n n C27 H272 PTY sing 674 n n C28 C29 PTY sing 675 n n C28 H281 PTY sing 676 n n C28 H282 PTY sing 677 n n C29 H291 PTY sing 678 n n C29 H292 PTY sing 679 n n C29 H293 PTY sing 680 n n C30 C31 PTY sing 681 n n C30 O30 PTY doub 682 n n C31 C32 PTY sing 683 n n C31 H311 PTY sing 684 n n C31 H312 PTY sing 685 n n C32 C33 PTY sing 686 n n C32 H321 PTY sing 687 n n C32 H322 PTY sing 688 n n C33 C34 PTY sing 689 n n C33 H331 PTY sing 690 n n C33 H332 PTY sing 691 n n C34 C35 PTY sing 692 n n C34 H341 PTY sing 693 n n C34 H342 PTY sing 694 n n C35 C36 PTY sing 695 n n C35 H351 PTY sing 696 n n C35 H352 PTY sing 697 n n C36 C37 PTY sing 698 n n C36 H361 PTY sing 699 n n C36 H362 PTY sing 700 n n C37 C38 PTY sing 701 n n C37 H371 PTY sing 702 n n C37 H372 PTY sing 703 n n C38 C39 PTY sing 704 n n C38 H381 PTY sing 705 n n C38 H382 PTY sing 706 n n C39 C40 PTY sing 707 n n C39 H391 PTY sing 708 n n C39 H392 PTY sing 709 n n C40 C41 PTY sing 710 n n C40 H401 PTY sing 711 n n C40 H402 PTY sing 712 n n C41 C42 PTY sing 713 n n C41 H411 PTY sing 714 n n C41 H412 PTY sing 715 n n C42 C43 PTY sing 716 n n C42 H421 PTY sing 717 n n C42 H422 PTY sing 718 n n C43 C44 PTY sing 719 n n C43 H431 PTY sing 720 n n C43 H432 PTY sing 721 n n C44 H441 PTY sing 722 n n C44 H442 PTY sing 723 n n C44 H443 PTY sing 724 n n P1 O11 PTY sing 725 n n P1 O12 PTY sing 726 n n P1 O13 PTY doub 727 n n P1 O14 PTY sing 728 n n O12 H12O PTY sing 729 n n N1 HN11 PTY sing 730 n n N1 HN12 PTY sing 731 n n # _atom_sites.entry_id 6WBM _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 PTY A 1 401 401 PTY PTY . I 2 PTY A 1 402 402 PTY PTY . J 3 3PE A 1 403 403 3PE PEH . K 4 DGA A 1 404 404 DGA DGA . L 5 CLR A 1 405 405 CLR CLR . M 5 CLR A 1 406 406 CLR CLR . N 4 DGA A 1 407 404 DGA DGA . O 2 PTY B 1 401 401 PTY PTY . P 2 PTY B 1 402 402 PTY PTY . Q 3 3PE B 1 403 403 3PE PEH . R 5 CLR B 1 404 405 CLR CLR . S 5 CLR B 1 405 406 CLR CLR . T 4 DGA B 1 406 404 DGA DGA . U 2 PTY C 1 401 401 PTY PTY . V 2 PTY C 1 402 402 PTY PTY . W 3 3PE C 1 403 403 3PE PEH . X 5 CLR C 1 404 405 CLR CLR . Y 5 CLR C 1 405 406 CLR CLR . Z 4 DGA C 1 406 404 DGA DGA . AA 2 PTY D 1 401 401 PTY PTY . BA 2 PTY D 1 402 402 PTY PTY . CA 3 3PE D 1 403 403 3PE PEH . DA 5 CLR D 1 404 405 CLR CLR . EA 5 CLR D 1 405 406 CLR CLR . FA 4 DGA D 1 406 404 DGA DGA . GA 2 PTY E 1 401 401 PTY PTY . HA 2 PTY E 1 402 402 PTY PTY . IA 3 3PE E 1 403 403 3PE PEH . JA 5 CLR E 1 404 405 CLR CLR . KA 5 CLR E 1 405 406 CLR CLR . LA 4 DGA E 1 406 404 DGA DGA . MA 2 PTY F 1 401 401 PTY PTY . NA 2 PTY F 1 402 402 PTY PTY . OA 3 3PE F 1 403 403 3PE PEH . PA 5 CLR F 1 404 405 CLR CLR . QA 5 CLR F 1 405 406 CLR CLR . RA 4 DGA F 1 406 404 DGA DGA . SA 2 PTY G 1 401 401 PTY PTY . TA 2 PTY G 1 402 402 PTY PTY . UA 3 3PE G 1 403 403 3PE PEH . VA 5 CLR G 1 404 405 CLR CLR . WA 5 CLR G 1 405 406 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . V 2 144.962 148.934 99.292 1 20 ? C1 PTY 402 C 1 HETATM 2 C C2 PTY . . . V 2 149.914 148.773 96.277 1 20 ? C2 PTY 402 C 1 HETATM 3 C C3 PTY . . . V 2 149.808 147.337 96.719 1 20 ? C3 PTY 402 C 1 HETATM 4 O O4 PTY . . . V 2 143.608 149.08 99.773 1 20 ? O4 PTY 402 C 1 HETATM 5 C C5 PTY . . . V 2 146.208 148.328 97.177 1 20 ? C5 PTY 402 C 1 HETATM 6 C C6 PTY . . . V 2 144.936 148.879 97.782 1 20 ? C6 PTY 402 C 1 HETATM 7 O O7 PTY . . . V 2 144.703 150.213 97.252 1 20 ? O7 PTY 402 C 1 HETATM 8 C C8 PTY . . . V 2 144.158 151.129 98.068 1 20 ? C8 PTY 402 C 1 HETATM 9 O O10 PTY . . . V 2 142.968 151.26 98.182 1 20 ? O10 PTY 402 C 1 HETATM 10 C C11 PTY . . . V 2 145.183 151.949 98.801 1 20 ? C11 PTY 402 C 1 HETATM 11 C C12 PTY . . . V 2 146.575 151.765 98.281 1 20 ? C12 PTY 402 C 1 HETATM 12 C C13 PTY . . . V 2 147.482 151.067 99.28 1 20 ? C13 PTY 402 C 1 HETATM 13 C C14 PTY . . . V 2 147.441 151.655 100.67 1 20 ? C14 PTY 402 C 1 HETATM 14 C C15 PTY . . . V 2 147.798 150.681 101.765 1 20 ? C15 PTY 402 C 1 HETATM 15 C C16 PTY . . . V 2 147.587 151.214 103.161 1 20 ? C16 PTY 402 C 1 HETATM 16 C C17 PTY . . . V 2 146.187 151.027 103.691 1 20 ? C17 PTY 402 C 1 HETATM 17 C C18 PTY . . . V 2 146.123 150.581 105.131 1 20 ? C18 PTY 402 C 1 HETATM 18 C C19 PTY . . . V 2 145.375 151.525 106.04 1 20 ? C19 PTY 402 C 1 HETATM 19 C C20 PTY . . . V 2 145.393 151.129 107.496 1 20 ? C20 PTY 402 C 1 HETATM 20 C C21 PTY . . . V 2 144.691 152.101 108.411 1 20 ? C21 PTY 402 C 1 HETATM 21 C C30 PTY . . . V 2 143.336 148.512 100.943 1 20 ? C30 PTY 402 C 1 HETATM 22 C C31 PTY . . . V 2 142.948 149.533 101.976 1 20 ? C31 PTY 402 C 1 HETATM 23 O O30 PTY . . . V 2 143.399 147.325 101.129 1 20 ? O30 PTY 402 C 1 HETATM 24 C C32 PTY . . . V 2 141.788 149.11 102.822 1 20 ? C32 PTY 402 C 1 HETATM 25 C C33 PTY . . . V 2 141.848 149.688 104.226 1 20 ? C33 PTY 402 C 1 HETATM 26 C C34 PTY . . . V 2 141.626 148.676 105.323 1 20 ? C34 PTY 402 C 1 HETATM 27 C C35 PTY . . . V 2 141.798 149.225 106.718 1 20 ? C35 PTY 402 C 1 HETATM 28 C C36 PTY . . . V 2 140.502 149.508 107.437 1 20 ? C36 PTY 402 C 1 HETATM 29 C C37 PTY . . . V 2 140.486 149.073 108.882 1 20 ? C37 PTY 402 C 1 HETATM 30 C C38 PTY . . . V 2 141.806 149.239 109.594 1 20 ? C38 PTY 402 C 1 HETATM 31 C C39 PTY . . . V 2 141.784 148.824 111.045 1 20 ? C39 PTY 402 C 1 HETATM 32 C C40 PTY . . . V 2 140.432 148.375 111.541 1 20 ? C40 PTY 402 C 1 HETATM 33 C C41 PTY . . . V 2 140.378 148.09 113.022 1 20 ? C41 PTY 402 C 1 HETATM 34 P P1 PTY . . . V 2 147.585 146.087 97.407 1 20 ? P1 PTY 402 C 1 HETATM 35 O O11 PTY . . . V 2 148.522 146.793 96.311 1 20 ? O11 PTY 402 C 1 HETATM 36 O O12 PTY . . . V 2 148.148 146.387 98.769 1 20 ? O12 PTY 402 C 1 HETATM 37 O O13 PTY . . . V 2 147.363 144.66 96.985 1 20 ? O13 PTY 402 C 1 HETATM 38 O O14 PTY . . . V 2 146.195 146.876 97.255 1 20 ? O14 PTY 402 C 1 HETATM 39 N N1 PTY . . . V 2 151.233 149.075 95.718 1 20 ? N1 PTY 402 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 48 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 39 #