data_6WBM # _model_server_result.job_id QU3NepR6fo_bY2lGWNcU5g _model_server_result.datetime_utc '2024-11-08 13:29:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wbm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":403}' # _entry.id 6WBM # _exptl.entry_id 6WBM _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 748.065 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-Distearoyl-sn-glycerophosphoethanolamine _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WBM _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WBM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 Q N N ? 3 W N N ? 3 CA N N ? 3 IA N N ? 3 OA N N ? 3 UA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 265 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 84 A CYS 84 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 66 B CYS 66 1_555 B SG CYS 265 B CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 84 B CYS 84 1_555 B SG CYS 246 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 C SG CYS 66 C CYS 66 1_555 C SG CYS 265 C CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 C SG CYS 84 C CYS 84 1_555 C SG CYS 246 C CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 D SG CYS 66 D CYS 66 1_555 D SG CYS 265 D CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 D SG CYS 84 D CYS 84 1_555 D SG CYS 246 D CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 E SG CYS 66 E CYS 66 1_555 E SG CYS 265 E CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 E SG CYS 84 E CYS 84 1_555 E SG CYS 246 E CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 F SG CYS 66 F CYS 66 1_555 F SG CYS 265 F CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 F SG CYS 84 F CYS 84 1_555 F SG CYS 246 F CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 G SG CYS 66 G CYS 66 1_555 G SG CYS 265 G CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 G SG CYS 84 G CYS 84 1_555 G SG CYS 246 G CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C41 H82 N O8 P' _chem_comp.formula_weight 748.065 _chem_comp.id 3PE _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-Distearoyl-sn-glycerophosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLETHANOLAMINE;1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O11 3PE sing 1 n n P O12 3PE sing 2 n n P O13 3PE sing 3 n n P O14 3PE doub 4 n n N C12 3PE sing 5 n n N HN1 3PE sing 6 n n N HN2 3PE sing 7 n n O11 C1 3PE sing 8 n n O13 C11 3PE sing 9 n n C11 C12 3PE sing 10 n n C11 H111 3PE sing 11 n n C11 H112 3PE sing 12 n n C12 H121 3PE sing 13 n n C12 H122 3PE sing 14 n n C1 C2 3PE sing 15 n n C1 H11 3PE sing 16 n n C1 H12 3PE sing 17 n n C2 C3 3PE sing 18 n n C2 O21 3PE sing 19 n n C2 H2 3PE sing 20 n n C3 O31 3PE sing 21 n n C3 H31 3PE sing 22 n n C3 H32 3PE sing 23 n n O31 C31 3PE sing 24 n n O32 C31 3PE doub 25 n n C31 C32 3PE sing 26 n n C32 C33 3PE sing 27 n n C32 H321 3PE sing 28 n n C32 H322 3PE sing 29 n n C33 C34 3PE sing 30 n n C33 H331 3PE sing 31 n n C33 H332 3PE sing 32 n n C34 C35 3PE sing 33 n n C34 H341 3PE sing 34 n n C34 H342 3PE sing 35 n n C35 C36 3PE sing 36 n n C35 H351 3PE sing 37 n n C35 H352 3PE sing 38 n n C36 C37 3PE sing 39 n n C36 H361 3PE sing 40 n n C36 H362 3PE sing 41 n n C37 C38 3PE sing 42 n n C37 H371 3PE sing 43 n n C37 H372 3PE sing 44 n n C38 C39 3PE sing 45 n n C38 H381 3PE sing 46 n n C38 H382 3PE sing 47 n n C39 C3A 3PE sing 48 n n C39 H391 3PE sing 49 n n C39 H392 3PE sing 50 n n C3A C3B 3PE sing 51 n n C3A H3A1 3PE sing 52 n n C3A H3A2 3PE sing 53 n n C3B C3C 3PE sing 54 n n C3B H3B1 3PE sing 55 n n C3B H3B2 3PE sing 56 n n C3C C3D 3PE sing 57 n n C3C H3C1 3PE sing 58 n n C3C H3C2 3PE sing 59 n n C3D C3E 3PE sing 60 n n C3D H3D1 3PE sing 61 n n C3D H3D2 3PE sing 62 n n C3E C3F 3PE sing 63 n n C3E H3E1 3PE sing 64 n n C3E H3E2 3PE sing 65 n n C3F C3G 3PE sing 66 n n C3F H3F1 3PE sing 67 n n C3F H3F2 3PE sing 68 n n C3G C3H 3PE sing 69 n n C3G H3G1 3PE sing 70 n n C3G H3G2 3PE sing 71 n n C3H C3I 3PE sing 72 n n C3H H3H1 3PE sing 73 n n C3H H3H2 3PE sing 74 n n C3I H3I1 3PE sing 75 n n C3I H3I2 3PE sing 76 n n C3I H3I3 3PE sing 77 n n O21 C21 3PE sing 78 n n O22 C21 3PE doub 79 n n C21 C22 3PE sing 80 n n C22 C23 3PE sing 81 n n C22 H221 3PE sing 82 n n C22 H222 3PE sing 83 n n C23 C24 3PE sing 84 n n C23 H231 3PE sing 85 n n C23 H232 3PE sing 86 n n C24 C25 3PE sing 87 n n C24 H241 3PE sing 88 n n C24 H242 3PE sing 89 n n C25 C26 3PE sing 90 n n C25 H251 3PE sing 91 n n C25 H252 3PE sing 92 n n C26 C27 3PE sing 93 n n C26 H261 3PE sing 94 n n C26 H262 3PE sing 95 n n C27 C28 3PE sing 96 n n C27 H271 3PE sing 97 n n C27 H272 3PE sing 98 n n C28 C29 3PE sing 99 n n C28 H281 3PE sing 100 n n C28 H282 3PE sing 101 n n C29 C2A 3PE sing 102 n n C29 H291 3PE sing 103 n n C29 H292 3PE sing 104 n n C2A C2B 3PE sing 105 n n C2A H2A1 3PE sing 106 n n C2A H2A2 3PE sing 107 n n C2B C2C 3PE sing 108 n n C2B H2B1 3PE sing 109 n n C2B H2B2 3PE sing 110 n n C2C C2D 3PE sing 111 n n C2C H2C1 3PE sing 112 n n C2C H2C2 3PE sing 113 n n C2D C2E 3PE sing 114 n n C2D H2D1 3PE sing 115 n n C2D H2D2 3PE sing 116 n n C2E C2F 3PE sing 117 n n C2E H2E1 3PE sing 118 n n C2E H2E2 3PE sing 119 n n C2F C2G 3PE sing 120 n n C2F H2F1 3PE sing 121 n n C2F H2F2 3PE sing 122 n n C2G C2H 3PE sing 123 n n C2G H2G1 3PE sing 124 n n C2G H2G2 3PE sing 125 n n C2H C2I 3PE sing 126 n n C2H H2H1 3PE sing 127 n n C2H H2H2 3PE sing 128 n n C2I H2I1 3PE sing 129 n n C2I H2I2 3PE sing 130 n n C2I H2I3 3PE sing 131 n n O12 H1 3PE sing 132 n n # _atom_sites.entry_id 6WBM _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 PTY A 1 401 401 PTY PTY . I 2 PTY A 1 402 402 PTY PTY . J 3 3PE A 1 403 403 3PE PEH . K 4 DGA A 1 404 404 DGA DGA . L 5 CLR A 1 405 405 CLR CLR . M 5 CLR A 1 406 406 CLR CLR . N 4 DGA A 1 407 404 DGA DGA . O 2 PTY B 1 401 401 PTY PTY . P 2 PTY B 1 402 402 PTY PTY . Q 3 3PE B 1 403 403 3PE PEH . R 5 CLR B 1 404 405 CLR CLR . S 5 CLR B 1 405 406 CLR CLR . T 4 DGA B 1 406 404 DGA DGA . U 2 PTY C 1 401 401 PTY PTY . V 2 PTY C 1 402 402 PTY PTY . W 3 3PE C 1 403 403 3PE PEH . X 5 CLR C 1 404 405 CLR CLR . Y 5 CLR C 1 405 406 CLR CLR . Z 4 DGA C 1 406 404 DGA DGA . AA 2 PTY D 1 401 401 PTY PTY . BA 2 PTY D 1 402 402 PTY PTY . CA 3 3PE D 1 403 403 3PE PEH . DA 5 CLR D 1 404 405 CLR CLR . EA 5 CLR D 1 405 406 CLR CLR . FA 4 DGA D 1 406 404 DGA DGA . GA 2 PTY E 1 401 401 PTY PTY . HA 2 PTY E 1 402 402 PTY PTY . IA 3 3PE E 1 403 403 3PE PEH . JA 5 CLR E 1 404 405 CLR CLR . KA 5 CLR E 1 405 406 CLR CLR . LA 4 DGA E 1 406 404 DGA DGA . MA 2 PTY F 1 401 401 PTY PTY . NA 2 PTY F 1 402 402 PTY PTY . OA 3 3PE F 1 403 403 3PE PEH . PA 5 CLR F 1 404 405 CLR CLR . QA 5 CLR F 1 405 406 CLR CLR . RA 4 DGA F 1 406 404 DGA DGA . SA 2 PTY G 1 401 401 PTY PTY . TA 2 PTY G 1 402 402 PTY PTY . UA 3 3PE G 1 403 403 3PE PEH . VA 5 CLR G 1 404 405 CLR CLR . WA 5 CLR G 1 405 406 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 3PE . . . W 3 149.61 146.71 133.977 1 138.15 ? P 3PE 403 C 1 HETATM 2 N N 3PE . . . W 3 149.921 147.054 137.915 1 138.15 ? N 3PE 403 C 1 HETATM 3 O O11 3PE . . . W 3 148.529 147.171 132.88 1 138.15 ? O11 3PE 403 C 1 HETATM 4 O O12 3PE . . . W 3 149.145 145.382 134.507 1 138.15 ? O12 3PE 403 C 1 HETATM 5 O O13 3PE . . . W 3 149.508 147.824 135.136 1 138.15 ? O13 3PE 403 C 1 HETATM 6 O O14 3PE . . . W 3 150.978 146.826 133.363 1 138.15 ? O14 3PE 403 C 1 HETATM 7 C C11 3PE . . . W 3 148.424 147.79 136.108 1 138.15 ? C11 3PE 403 C 1 HETATM 8 C C12 3PE . . . W 3 148.69 146.763 137.179 1 138.15 ? C12 3PE 403 C 1 HETATM 9 C C1 3PE . . . W 3 147.115 146.913 133.108 1 138.15 ? C1 3PE 403 C 1 HETATM 10 C C2 3PE . . . W 3 146.263 147.351 131.936 1 138.15 ? C2 3PE 403 C 1 HETATM 11 C C3 3PE . . . W 3 144.799 147.022 132.122 1 138.15 ? C3 3PE 403 C 1 HETATM 12 O O31 3PE . . . W 3 144.077 147.271 130.895 1 138.15 ? O31 3PE 403 C 1 HETATM 13 O O32 3PE . . . W 3 142.214 146.619 131.926 1 138.15 ? O32 3PE 403 C 1 HETATM 14 C C31 3PE . . . W 3 142.776 146.998 130.933 1 138.15 ? C31 3PE 403 C 1 HETATM 15 C C32 3PE . . . W 3 142.111 147.202 129.6 1 138.15 ? C32 3PE 403 C 1 HETATM 16 C C33 3PE . . . W 3 141.414 145.973 129.102 1 138.15 ? C33 3PE 403 C 1 HETATM 17 C C34 3PE . . . W 3 140.399 146.261 128.007 1 138.15 ? C34 3PE 403 C 1 HETATM 18 C C35 3PE . . . W 3 140.969 146.898 126.763 1 138.15 ? C35 3PE 403 C 1 HETATM 19 C C36 3PE . . . W 3 139.999 146.971 125.608 1 138.15 ? C36 3PE 403 C 1 HETATM 20 C C37 3PE . . . W 3 140.579 147.561 124.347 1 138.15 ? C37 3PE 403 C 1 HETATM 21 C C38 3PE . . . W 3 140.951 149.017 124.458 1 138.15 ? C38 3PE 403 C 1 HETATM 22 C C39 3PE . . . W 3 139.776 149.932 124.698 1 138.15 ? C39 3PE 403 C 1 HETATM 23 C C3A 3PE . . . W 3 140.144 151.381 124.9 1 138.15 ? C3A 3PE 403 C 1 HETATM 24 C C3B 3PE . . . W 3 138.96 152.293 125.102 1 138.15 ? C3B 3PE 403 C 1 HETATM 25 C C3C 3PE . . . W 3 139.317 153.727 125.408 1 138.15 ? C3C 3PE 403 C 1 HETATM 26 C C3D 3PE . . . W 3 140.053 153.925 126.71 1 138.15 ? C3D 3PE 403 C 1 HETATM 27 C C3E 3PE . . . W 3 140.376 155.364 127.025 1 138.15 ? C3E 3PE 403 C 1 HETATM 28 C C3F 3PE . . . W 3 141.1 155.563 128.332 1 138.15 ? C3F 3PE 403 C 1 HETATM 29 C C3G 3PE . . . W 3 141.432 156.999 128.652 1 138.15 ? C3G 3PE 403 C 1 HETATM 30 C C3H 3PE . . . W 3 142.146 157.178 129.966 1 138.15 ? C3H 3PE 403 C 1 HETATM 31 C C3I 3PE . . . W 3 142.503 158.612 130.278 1 138.15 ? C3I 3PE 403 C 1 HETATM 32 O O21 3PE . . . W 3 146.398 148.789 131.748 1 138.15 ? O21 3PE 403 C 1 HETATM 33 O O22 3PE . . . W 3 147.768 150.399 131.075 1 138.15 ? O22 3PE 403 C 1 HETATM 34 C C21 3PE . . . W 3 147.401 149.258 130.984 1 138.15 ? C21 3PE 403 C 1 HETATM 35 C C22 3PE . . . W 3 147.967 148.264 130.003 1 138.15 ? C22 3PE 403 C 1 HETATM 36 C C23 3PE . . . W 3 147.727 148.627 128.57 1 138.15 ? C23 3PE 403 C 1 HETATM 37 C C24 3PE . . . W 3 148.532 149.833 128.118 1 138.15 ? C24 3PE 403 C 1 HETATM 38 C C25 3PE . . . W 3 150.021 149.682 128.297 1 138.15 ? C25 3PE 403 C 1 HETATM 39 C C26 3PE . . . W 3 150.841 150.775 127.657 1 138.15 ? C26 3PE 403 C 1 HETATM 40 C C27 3PE . . . W 3 150.709 150.846 126.156 1 138.15 ? C27 3PE 403 C 1 HETATM 41 C C28 3PE . . . W 3 151.575 151.896 125.506 1 138.15 ? C28 3PE 403 C 1 HETATM 42 C C29 3PE . . . W 3 153.055 151.708 125.734 1 138.15 ? C29 3PE 403 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 48 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 42 #