data_6WBM
#
_model_server_result.job_id            rUpmXa1KTtt3NelWBbpwyw 
_model_server_result.datetime_utc      '2024-11-08 13:28:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6wbm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"RA","auth_seq_id":406}' 
#
_entry.id    6WBM 
#
_exptl.entry_id    6WBM 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              625.018 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIACYL GLYCEROL' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6WBM 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6WBM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 K N N 
? 4 N N N 
? 4 T N N 
? 4 Z N N 
? 4 FA N N 
? 4 LA N N 
? 4 RA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 265 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 84 A CYS 84 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 B SG CYS 66 B CYS 66 1_555 B SG CYS 265 B CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 B SG CYS 84 B CYS 84 1_555 B SG CYS 246 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 C SG CYS 66 C CYS 66 1_555 C SG CYS 265 C CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 C SG CYS 84 C CYS 84 1_555 C SG CYS 246 C CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 D SG CYS 66 D CYS 66 1_555 D SG CYS 265 D CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf8 D SG CYS 84 D CYS 84 1_555 D SG CYS 246 D CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf9 E SG CYS 66 E CYS 66 1_555 E SG CYS 265 E CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf10 E SG CYS 84 E CYS 84 1_555 E SG CYS 246 E CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf11 F SG CYS 66 F CYS 66 1_555 F SG CYS 265 F CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf12 F SG CYS 84 F CYS 84 1_555 F SG CYS 246 F CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf13 G SG CYS 66 G CYS 66 1_555 G SG CYS 265 G CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf14 G SG CYS 84 G CYS 84 1_555 G SG CYS 246 G CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'C39 H76 O5' 
_chem_comp.formula_weight    625.018 
_chem_comp.id                DGA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIACYL GLYCEROL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CA1 CA2 DGA sing 292 n n 
CA1 OA1 DGA doub 293 n n 
CA1 OG1 DGA sing 294 n n 
CA2 CA3 DGA sing 295 n n 
CA2 HA21 DGA sing 296 n n 
CA2 HA22 DGA sing 297 n n 
CA3 CA4 DGA sing 298 n n 
CA3 HA31 DGA sing 299 n n 
CA3 HA32 DGA sing 300 n n 
CA4 CA5 DGA sing 301 n n 
CA4 HA41 DGA sing 302 n n 
CA4 HA42 DGA sing 303 n n 
CA5 CA6 DGA sing 304 n n 
CA5 HA51 DGA sing 305 n n 
CA5 HA52 DGA sing 306 n n 
CA6 CA7 DGA sing 307 n n 
CA6 HA61 DGA sing 308 n n 
CA6 HA62 DGA sing 309 n n 
CA7 CA8 DGA sing 310 n n 
CA7 HA71 DGA sing 311 n n 
CA7 HA72 DGA sing 312 n n 
CA8 CA9 DGA sing 313 n n 
CA8 HA81 DGA sing 314 n n 
CA8 HA82 DGA sing 315 n n 
CA9 CAA DGA sing 316 n n 
CA9 HA91 DGA sing 317 n n 
CA9 HA92 DGA sing 318 n n 
CAA CBA DGA sing 319 n n 
CAA HAT1 DGA sing 320 n n 
CAA HAT2 DGA sing 321 n n 
CBA CCA DGA sing 322 n n 
CBA HAE1 DGA sing 323 n n 
CBA HAE2 DGA sing 324 n n 
CCA CDA DGA sing 325 n n 
CCA HAW1 DGA sing 326 n n 
CCA HAW2 DGA sing 327 n n 
CDA CEA DGA sing 328 n n 
CDA HAH1 DGA sing 329 n n 
CDA HAH2 DGA sing 330 n n 
CEA CFA DGA sing 331 n n 
CEA HAF1 DGA sing 332 n n 
CEA HAF2 DGA sing 333 n n 
CFA CGA DGA sing 334 n n 
CFA HAN1 DGA sing 335 n n 
CFA HAN2 DGA sing 336 n n 
CGA CHA DGA sing 337 n n 
CGA HAS1 DGA sing 338 n n 
CGA HAS2 DGA sing 339 n n 
CHA CIA DGA sing 340 n n 
CHA HAV1 DGA sing 341 n n 
CHA HAV2 DGA sing 342 n n 
CIA HAG1 DGA sing 343 n n 
CIA HAG2 DGA sing 344 n n 
CIA HAG3 DGA sing 345 n n 
CB1 CB2 DGA sing 346 n n 
CB1 OB1 DGA doub 347 n n 
CB1 OG2 DGA sing 348 n n 
CB2 CB3 DGA sing 349 n n 
CB2 HB21 DGA sing 350 n n 
CB2 HB22 DGA sing 351 n n 
CB3 CB4 DGA sing 352 n n 
CB3 HB31 DGA sing 353 n n 
CB3 HB32 DGA sing 354 n n 
CB4 CB5 DGA sing 355 n n 
CB4 HB41 DGA sing 356 n n 
CB4 HB42 DGA sing 357 n n 
CB5 CB6 DGA sing 358 n n 
CB5 HB51 DGA sing 359 n n 
CB5 HB52 DGA sing 360 n n 
CB6 CB7 DGA sing 361 n n 
CB6 HB61 DGA sing 362 n n 
CB6 HB62 DGA sing 363 n n 
CB7 CB8 DGA sing 364 n n 
CB7 HB71 DGA sing 365 n n 
CB7 HB72 DGA sing 366 n n 
CB8 CB9 DGA sing 367 n n 
CB8 HB81 DGA sing 368 n n 
CB8 HB82 DGA sing 369 n n 
CB9 CAB DGA sing 370 n n 
CB9 HB91 DGA sing 371 n n 
CB9 HB92 DGA sing 372 n n 
CAB CBB DGA sing 373 n n 
CAB HBT1 DGA sing 374 n n 
CAB HBT2 DGA sing 375 n n 
CBB CCB DGA sing 376 n n 
CBB HBE1 DGA sing 377 n n 
CBB HBE2 DGA sing 378 n n 
CCB CDB DGA sing 379 n n 
CCB HBW1 DGA sing 380 n n 
CCB HBW2 DGA sing 381 n n 
CDB CEB DGA sing 382 n n 
CDB HBH1 DGA sing 383 n n 
CDB HBH2 DGA sing 384 n n 
CEB CFB DGA sing 385 n n 
CEB HBF1 DGA sing 386 n n 
CEB HBF2 DGA sing 387 n n 
CFB CGB DGA sing 388 n n 
CFB HBN1 DGA sing 389 n n 
CFB HBN2 DGA sing 390 n n 
CGB CHB DGA sing 391 n n 
CGB HBS1 DGA sing 392 n n 
CGB HBS2 DGA sing 393 n n 
CHB CIB DGA sing 394 n n 
CHB HBV1 DGA sing 395 n n 
CHB HBV2 DGA sing 396 n n 
CIB HBG1 DGA sing 397 n n 
CIB HBG2 DGA sing 398 n n 
CIB HBG3 DGA sing 399 n n 
OG1 CG1 DGA sing 400 n n 
CG1 CG2 DGA sing 401 n n 
CG1 HG11 DGA sing 402 n n 
CG1 HG12 DGA sing 403 n n 
CG2 OG2 DGA sing 404 n n 
CG2 CG3 DGA sing 405 n n 
CG2 HG2 DGA sing 406 n n 
CG3 OXT DGA sing 407 n n 
CG3 HG31 DGA sing 408 n n 
CG3 HG32 DGA sing 409 n n 
OXT HXT DGA sing 410 n n 
#
_atom_sites.entry_id                     6WBM 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 2 PTY A 1 401 401 PTY PTY . 
I 2 PTY A 1 402 402 PTY PTY . 
J 3 3PE A 1 403 403 3PE PEH . 
K 4 DGA A 1 404 404 DGA DGA . 
L 5 CLR A 1 405 405 CLR CLR . 
M 5 CLR A 1 406 406 CLR CLR . 
N 4 DGA A 1 407 404 DGA DGA . 
O 2 PTY B 1 401 401 PTY PTY . 
P 2 PTY B 1 402 402 PTY PTY . 
Q 3 3PE B 1 403 403 3PE PEH . 
R 5 CLR B 1 404 405 CLR CLR . 
S 5 CLR B 1 405 406 CLR CLR . 
T 4 DGA B 1 406 404 DGA DGA . 
U 2 PTY C 1 401 401 PTY PTY . 
V 2 PTY C 1 402 402 PTY PTY . 
W 3 3PE C 1 403 403 3PE PEH . 
X 5 CLR C 1 404 405 CLR CLR . 
Y 5 CLR C 1 405 406 CLR CLR . 
Z 4 DGA C 1 406 404 DGA DGA . 
AA 2 PTY D 1 401 401 PTY PTY . 
BA 2 PTY D 1 402 402 PTY PTY . 
CA 3 3PE D 1 403 403 3PE PEH . 
DA 5 CLR D 1 404 405 CLR CLR . 
EA 5 CLR D 1 405 406 CLR CLR . 
FA 4 DGA D 1 406 404 DGA DGA . 
GA 2 PTY E 1 401 401 PTY PTY . 
HA 2 PTY E 1 402 402 PTY PTY . 
IA 3 3PE E 1 403 403 3PE PEH . 
JA 5 CLR E 1 404 405 CLR CLR . 
KA 5 CLR E 1 405 406 CLR CLR . 
LA 4 DGA E 1 406 404 DGA DGA . 
MA 2 PTY F 1 401 401 PTY PTY . 
NA 2 PTY F 1 402 402 PTY PTY . 
OA 3 3PE F 1 403 403 3PE PEH . 
PA 5 CLR F 1 404 405 CLR CLR . 
QA 5 CLR F 1 405 406 CLR CLR . 
RA 4 DGA F 1 406 404 DGA DGA . 
SA 2 PTY G 1 401 401 PTY PTY . 
TA 2 PTY G 1 402 402 PTY PTY . 
UA 3 3PE G 1 403 403 3PE PEH . 
VA 5 CLR G 1 404 405 CLR CLR . 
WA 5 CLR G 1 405 406 CLR CLR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CA1 DGA . . . RA 4 99.238 111.947 121.969 1 133.53 ? CA1 DGA 406 F 1 
HETATM 2 C CA2 DGA . . . RA 4 98.742 110.733 122.713 1 133.53 ? CA2 DGA 406 F 1 
HETATM 3 C CA3 DGA . . . RA 4 97.756 111.036 123.798 1 133.53 ? CA3 DGA 406 F 1 
HETATM 4 C CA4 DGA . . . RA 4 98.4 111.668 125.017 1 133.53 ? CA4 DGA 406 F 1 
HETATM 5 C CA5 DGA . . . RA 4 97.468 111.812 126.191 1 133.53 ? CA5 DGA 406 F 1 
HETATM 6 C CA6 DGA . . . RA 4 98.135 112.3 127.45 1 133.53 ? CA6 DGA 406 F 1 
HETATM 7 C CA7 DGA . . . RA 4 97.22 112.369 128.645 1 133.53 ? CA7 DGA 406 F 1 
HETATM 8 C CA8 DGA . . . RA 4 96.578 111.052 129.008 1 133.53 ? CA8 DGA 406 F 1 
HETATM 9 O OA1 DGA . . . RA 4 99.864 112.851 122.459 1 133.53 ? OA1 DGA 406 F 1 
HETATM 10 C CB1 DGA . . . RA 4 96.468 109.343 117.488 1 133.53 ? CB1 DGA 406 F 1 
HETATM 11 C CB2 DGA . . . RA 4 95.475 108.228 117.66 1 133.53 ? CB2 DGA 406 F 1 
HETATM 12 C CB3 DGA . . . RA 4 94.171 108.674 118.244 1 133.53 ? CB3 DGA 406 F 1 
HETATM 13 C CB4 DGA . . . RA 4 93.278 107.508 118.638 1 133.53 ? CB4 DGA 406 F 1 
HETATM 14 C CB5 DGA . . . RA 4 91.912 107.909 119.14 1 133.53 ? CB5 DGA 406 F 1 
HETATM 15 C CB6 DGA . . . RA 4 91.932 108.867 120.304 1 133.53 ? CB6 DGA 406 F 1 
HETATM 16 C CB7 DGA . . . RA 4 90.569 109.216 120.847 1 133.53 ? CB7 DGA 406 F 1 
HETATM 17 C CB8 DGA . . . RA 4 89.819 108.046 121.433 1 133.53 ? CB8 DGA 406 F 1 
HETATM 18 C CB9 DGA . . . RA 4 88.473 108.401 122.016 1 133.53 ? CB9 DGA 406 F 1 
HETATM 19 O OB1 DGA . . . RA 4 97.086 109.583 116.484 1 133.53 ? OB1 DGA 406 F 1 
HETATM 20 O OG1 DGA . . . RA 4 98.895 111.915 120.683 1 133.53 ? OG1 DGA 406 F 1 
HETATM 21 C CG1 DGA . . . RA 4 97.9 110.936 120.311 1 133.53 ? CG1 DGA 406 F 1 
HETATM 22 C CG2 DGA . . . RA 4 97.752 110.895 118.81 1 133.53 ? CG2 DGA 406 F 1 
HETATM 23 O OG2 DGA . . . RA 4 96.577 110.064 118.614 1 133.53 ? OG2 DGA 406 F 1 
HETATM 24 C CG3 DGA . . . RA 4 97.584 112.262 118.19 1 133.53 ? CG3 DGA 406 F 1 
HETATM 25 O OXT DGA . . . RA 4 98.664 113.124 118.543 1 133.53 ? OXT DGA 406 F 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           25 
#