data_6WBO # _model_server_result.job_id hSVeYlhtqTTRo4ipozqTWA _model_server_result.datetime_utc '2024-10-11 08:29:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wbo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 6WBO # _exptl.entry_id 6WBO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WBO _cell.length_a 91.67 _cell.length_b 92.75 _cell.length_c 98.61 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WBO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 250 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 260 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id P _struct_conn.ptnr2_label_comp_id AMP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id AMP _struct_conn.ptnr2_auth_seq_id 602 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.444 _struct_conn.pdbx_value_order sing # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 6WBO _atom_sites.fract_transf_matrix[1][1] 0.010909 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010782 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010141 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 601 1 PO4 PO4 . C 3 AMP A 1 602 1 AMP AMP . D 4 HOH A 1 701 46 HOH HOH . D 4 HOH A 2 702 159 HOH HOH . D 4 HOH A 3 703 162 HOH HOH . D 4 HOH A 4 704 42 HOH HOH . D 4 HOH A 5 705 53 HOH HOH . D 4 HOH A 6 706 62 HOH HOH . D 4 HOH A 7 707 17 HOH HOH . D 4 HOH A 8 708 21 HOH HOH . D 4 HOH A 9 709 30 HOH HOH . D 4 HOH A 10 710 15 HOH HOH . D 4 HOH A 11 711 178 HOH HOH . D 4 HOH A 12 712 37 HOH HOH . D 4 HOH A 13 713 28 HOH HOH . D 4 HOH A 14 714 24 HOH HOH . D 4 HOH A 15 715 113 HOH HOH . D 4 HOH A 16 716 92 HOH HOH . D 4 HOH A 17 717 125 HOH HOH . D 4 HOH A 18 718 44 HOH HOH . D 4 HOH A 19 719 100 HOH HOH . D 4 HOH A 20 720 93 HOH HOH . D 4 HOH A 21 721 137 HOH HOH . D 4 HOH A 22 722 7 HOH HOH . D 4 HOH A 23 723 71 HOH HOH . D 4 HOH A 24 724 86 HOH HOH . D 4 HOH A 25 725 5 HOH HOH . D 4 HOH A 26 726 110 HOH HOH . D 4 HOH A 27 727 6 HOH HOH . D 4 HOH A 28 728 33 HOH HOH . D 4 HOH A 29 729 13 HOH HOH . D 4 HOH A 30 730 35 HOH HOH . D 4 HOH A 31 731 20 HOH HOH . D 4 HOH A 32 732 81 HOH HOH . D 4 HOH A 33 733 164 HOH HOH . D 4 HOH A 34 734 136 HOH HOH . D 4 HOH A 35 735 11 HOH HOH . D 4 HOH A 36 736 174 HOH HOH . D 4 HOH A 37 737 133 HOH HOH . D 4 HOH A 38 738 90 HOH HOH . D 4 HOH A 39 739 34 HOH HOH . D 4 HOH A 40 740 143 HOH HOH . D 4 HOH A 41 741 14 HOH HOH . D 4 HOH A 42 742 9 HOH HOH . D 4 HOH A 43 743 25 HOH HOH . D 4 HOH A 44 744 76 HOH HOH . D 4 HOH A 45 745 45 HOH HOH . D 4 HOH A 46 746 78 HOH HOH . D 4 HOH A 47 747 69 HOH HOH . D 4 HOH A 48 748 181 HOH HOH . D 4 HOH A 49 749 180 HOH HOH . D 4 HOH A 50 750 59 HOH HOH . D 4 HOH A 51 751 41 HOH HOH . D 4 HOH A 52 752 8 HOH HOH . D 4 HOH A 53 753 63 HOH HOH . D 4 HOH A 54 754 68 HOH HOH . D 4 HOH A 55 755 32 HOH HOH . D 4 HOH A 56 756 123 HOH HOH . D 4 HOH A 57 757 60 HOH HOH . D 4 HOH A 58 758 106 HOH HOH . D 4 HOH A 59 759 16 HOH HOH . D 4 HOH A 60 760 50 HOH HOH . D 4 HOH A 61 761 163 HOH HOH . D 4 HOH A 62 762 79 HOH HOH . D 4 HOH A 63 763 128 HOH HOH . D 4 HOH A 64 764 126 HOH HOH . D 4 HOH A 65 765 142 HOH HOH . D 4 HOH A 66 766 85 HOH HOH . D 4 HOH A 67 767 117 HOH HOH . D 4 HOH A 68 768 140 HOH HOH . D 4 HOH A 69 769 10 HOH HOH . D 4 HOH A 70 770 82 HOH HOH . D 4 HOH A 71 771 108 HOH HOH . D 4 HOH A 72 772 112 HOH HOH . D 4 HOH A 73 773 116 HOH HOH . D 4 HOH A 74 774 149 HOH HOH . D 4 HOH A 75 775 38 HOH HOH . D 4 HOH A 76 776 58 HOH HOH . D 4 HOH A 77 777 3 HOH HOH . D 4 HOH A 78 778 40 HOH HOH . D 4 HOH A 79 779 84 HOH HOH . D 4 HOH A 80 780 26 HOH HOH . D 4 HOH A 81 781 47 HOH HOH . D 4 HOH A 82 782 12 HOH HOH . D 4 HOH A 83 783 18 HOH HOH . D 4 HOH A 84 784 1 HOH HOH . D 4 HOH A 85 785 51 HOH HOH . D 4 HOH A 86 786 31 HOH HOH . D 4 HOH A 87 787 39 HOH HOH . D 4 HOH A 88 788 75 HOH HOH . D 4 HOH A 89 789 70 HOH HOH . D 4 HOH A 90 790 107 HOH HOH . D 4 HOH A 91 791 57 HOH HOH . D 4 HOH A 92 792 91 HOH HOH . D 4 HOH A 93 793 160 HOH HOH . D 4 HOH A 94 794 103 HOH HOH . D 4 HOH A 95 795 27 HOH HOH . D 4 HOH A 96 796 124 HOH HOH . D 4 HOH A 97 797 43 HOH HOH . D 4 HOH A 98 798 145 HOH HOH . D 4 HOH A 99 799 65 HOH HOH . D 4 HOH A 100 800 54 HOH HOH . D 4 HOH A 101 801 139 HOH HOH . D 4 HOH A 102 802 52 HOH HOH . D 4 HOH A 103 803 169 HOH HOH . D 4 HOH A 104 804 99 HOH HOH . D 4 HOH A 105 805 157 HOH HOH . D 4 HOH A 106 806 56 HOH HOH . D 4 HOH A 107 807 129 HOH HOH . D 4 HOH A 108 808 73 HOH HOH . D 4 HOH A 109 809 66 HOH HOH . D 4 HOH A 110 810 153 HOH HOH . D 4 HOH A 111 811 183 HOH HOH . D 4 HOH A 112 812 115 HOH HOH . D 4 HOH A 113 813 77 HOH HOH . D 4 HOH A 114 814 4 HOH HOH . D 4 HOH A 115 815 111 HOH HOH . D 4 HOH A 116 816 23 HOH HOH . D 4 HOH A 117 817 155 HOH HOH . D 4 HOH A 118 818 146 HOH HOH . D 4 HOH A 119 819 2 HOH HOH . D 4 HOH A 120 820 22 HOH HOH . D 4 HOH A 121 821 109 HOH HOH . D 4 HOH A 122 822 36 HOH HOH . D 4 HOH A 123 823 19 HOH HOH . D 4 HOH A 124 824 173 HOH HOH . D 4 HOH A 125 825 118 HOH HOH . D 4 HOH A 126 826 172 HOH HOH . D 4 HOH A 127 827 182 HOH HOH . D 4 HOH A 128 828 151 HOH HOH . D 4 HOH A 129 829 141 HOH HOH . D 4 HOH A 130 830 96 HOH HOH . D 4 HOH A 131 831 127 HOH HOH . D 4 HOH A 132 832 158 HOH HOH . D 4 HOH A 133 833 104 HOH HOH . D 4 HOH A 134 834 175 HOH HOH . D 4 HOH A 135 835 122 HOH HOH . D 4 HOH A 136 836 114 HOH HOH . D 4 HOH A 137 837 88 HOH HOH . D 4 HOH A 138 838 120 HOH HOH . D 4 HOH A 139 839 95 HOH HOH . D 4 HOH A 140 840 29 HOH HOH . D 4 HOH A 141 841 166 HOH HOH . D 4 HOH A 142 842 105 HOH HOH . D 4 HOH A 143 843 101 HOH HOH . D 4 HOH A 144 844 98 HOH HOH . D 4 HOH A 145 845 61 HOH HOH . D 4 HOH A 146 846 144 HOH HOH . D 4 HOH A 147 847 67 HOH HOH . D 4 HOH A 148 848 94 HOH HOH . D 4 HOH A 149 849 150 HOH HOH . D 4 HOH A 150 850 161 HOH HOH . D 4 HOH A 151 851 177 HOH HOH . D 4 HOH A 152 852 48 HOH HOH . D 4 HOH A 153 853 152 HOH HOH . D 4 HOH A 154 854 147 HOH HOH . D 4 HOH A 155 855 55 HOH HOH . D 4 HOH A 156 856 165 HOH HOH . D 4 HOH A 157 857 167 HOH HOH . D 4 HOH A 158 858 80 HOH HOH . D 4 HOH A 159 859 138 HOH HOH . D 4 HOH A 160 860 132 HOH HOH . D 4 HOH A 161 861 156 HOH HOH . D 4 HOH A 162 862 83 HOH HOH . D 4 HOH A 163 863 89 HOH HOH . D 4 HOH A 164 864 121 HOH HOH . D 4 HOH A 165 865 119 HOH HOH . D 4 HOH A 166 866 171 HOH HOH . D 4 HOH A 167 867 64 HOH HOH . D 4 HOH A 168 868 74 HOH HOH . D 4 HOH A 169 869 170 HOH HOH . D 4 HOH A 170 870 102 HOH HOH . D 4 HOH A 171 871 135 HOH HOH . D 4 HOH A 172 872 134 HOH HOH . D 4 HOH A 173 873 154 HOH HOH . D 4 HOH A 174 874 168 HOH HOH . D 4 HOH A 175 875 87 HOH HOH . D 4 HOH A 176 876 49 HOH HOH . D 4 HOH A 177 877 72 HOH HOH . D 4 HOH A 178 878 176 HOH HOH . D 4 HOH A 179 879 179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . C 3 30.139 86.329 100.536 1 32.48 ? P AMP 602 A 1 HETATM 2 O O1P AMP . . . C 3 31.046 86.238 99.329 1 35.45 ? O1P AMP 602 A 1 HETATM 3 O O2P AMP . . . C 3 29.267 85.151 100.948 1 26.77 ? O2P AMP 602 A 1 HETATM 4 O O5' AMP . . . C 3 29.154 87.567 100.238 1 27.66 ? O5' AMP 602 A 1 HETATM 5 C C5' AMP . . . C 3 27.782 87.408 100.62 1 29.6 ? C5' AMP 602 A 1 HETATM 6 C C4' AMP . . . C 3 27.182 88.725 101.111 1 29.14 ? C4' AMP 602 A 1 HETATM 7 O O4' AMP . . . C 3 27.762 89.116 102.355 1 29.87 ? O4' AMP 602 A 1 HETATM 8 C C3' AMP . . . C 3 27.425 89.896 100.158 1 27.74 ? C3' AMP 602 A 1 HETATM 9 O O3' AMP . . . C 3 26.146 90.419 99.767 1 25.93 ? O3' AMP 602 A 1 HETATM 10 C C2' AMP . . . C 3 28.176 90.953 100.942 1 26.64 ? C2' AMP 602 A 1 HETATM 11 O O2' AMP . . . C 3 27.624 92.231 100.636 1 28.94 ? O2' AMP 602 A 1 HETATM 12 C C1' AMP . . . C 3 27.738 90.55 102.33 1 28.02 ? C1' AMP 602 A 1 HETATM 13 N N9 AMP . . . C 3 28.455 91.142 103.471 1 30.05 ? N9 AMP 602 A 1 HETATM 14 C C8 AMP . . . C 3 28.905 90.438 104.523 1 31.26 ? C8 AMP 602 A 1 HETATM 15 N N7 AMP . . . C 3 29.459 91.263 105.441 1 32.76 ? N7 AMP 602 A 1 HETATM 16 C C5 AMP . . . C 3 29.351 92.526 104.98 1 26.47 ? C5 AMP 602 A 1 HETATM 17 C C6 AMP . . . C 3 29.755 93.86 105.472 1 27.73 ? C6 AMP 602 A 1 HETATM 18 N N6 AMP . . . C 3 30.396 93.99 106.66 1 29.59 ? N6 AMP 602 A 1 HETATM 19 N N1 AMP . . . C 3 29.463 94.931 104.701 1 27.42 ? N1 AMP 602 A 1 HETATM 20 C C2 AMP . . . C 3 28.832 94.768 103.518 1 32.41 ? C2 AMP 602 A 1 HETATM 21 N N3 AMP . . . C 3 28.446 93.577 103.006 1 25.78 ? N3 AMP 602 A 1 HETATM 22 C C4 AMP . . . C 3 28.672 92.44 103.687 1 27.42 ? C4 AMP 602 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #