data_6WBQ # _model_server_result.job_id 8c1TezrVEUw4PZl7uDDRmA _model_server_result.datetime_utc '2024-11-28 09:05:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wbq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":710}' # _entry.id 6WBQ # _exptl.entry_id 6WBQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6WBQ _cell.length_a 80.63 _cell.length_b 80.63 _cell.length_c 246.811 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WBQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 K N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 543 A CYS 543 1_555 A SG CYS 543 A CYS 543 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc1 A O ASP 172 A ASP 172 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? metalc ? metalc2 A OD2 ASP 172 A ASP 172 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc3 A O ASP 174 A ASP 174 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc4 A OD2 ASP 174 A ASP 174 1_555 M ZN ZN . A ZN 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc5 A O HIS 176 A HIS 176 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc6 A ND1 HIS 176 A HIS 176 1_555 M ZN ZN . A ZN 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc7 A O PHE 185 A PHE 185 1_555 I K K . A K 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc8 A O ASP 188 A ASP 188 1_555 I K K . A K 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc9 A O VAL 191 A VAL 191 1_555 I K K . A K 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc10 A OG SER 195 A SER 195 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc11 A O TRP 196 A TRP 196 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc12 A O PHE 224 A PHE 224 1_555 I K K . A K 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.141 ? metalc ? metalc13 A OD2 ASP 267 A ASP 267 1_555 M ZN ZN . A ZN 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc14 B O2 N9W . A N9W 701 1_555 M ZN ZN . A ZN 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc15 B N1 N9W . A N9W 701 1_555 M ZN ZN . A ZN 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc16 B O1 N9W . A N9W 701 1_555 M ZN ZN . A ZN 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc17 I K K . A K 708 1_555 N O HOH . A HOH 862 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.498 ? metalc ? metalc18 I K K . A K 708 1_555 N O HOH . A HOH 887 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc19 I K K . A K 708 1_555 N O HOH . A HOH 971 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 318 n n P O2 PO4 sing 319 n n P O3 PO4 sing 320 n n P O4 PO4 sing 321 n n # _atom_sites.entry_id 6WBQ _atom_sites.fract_transf_matrix[1][1] 0.012402 _atom_sites.fract_transf_matrix[1][2] 0.00716 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014321 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004052 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 N9W A 1 701 701 N9W LIG . C 3 EDO A 1 702 801 EDO EDO . D 3 EDO A 1 703 901 EDO EDO . E 3 EDO A 1 704 1001 EDO EDO . F 3 EDO A 1 705 1201 EDO EDO . G 3 EDO A 1 706 1301 EDO EDO . H 4 K A 1 707 1 K K . I 4 K A 1 708 2 K K . J 5 PO4 A 1 709 1 PO4 PO4 . K 5 PO4 A 1 710 2 PO4 PO4 . L 5 PO4 A 1 711 3 PO4 PO4 . M 6 ZN A 1 712 1 ZN ZN . N 7 HOH A 1 801 191 HOH HOH . N 7 HOH A 2 802 137 HOH HOH . N 7 HOH A 3 803 157 HOH HOH . N 7 HOH A 4 804 181 HOH HOH . N 7 HOH A 5 805 177 HOH HOH . N 7 HOH A 6 806 69 HOH HOH . N 7 HOH A 7 807 190 HOH HOH . N 7 HOH A 8 808 81 HOH HOH . N 7 HOH A 9 809 173 HOH HOH . N 7 HOH A 10 810 119 HOH HOH . N 7 HOH A 11 811 147 HOH HOH . N 7 HOH A 12 812 154 HOH HOH . N 7 HOH A 13 813 31 HOH HOH . N 7 HOH A 14 814 55 HOH HOH . N 7 HOH A 15 815 47 HOH HOH . N 7 HOH A 16 816 4 HOH HOH . N 7 HOH A 17 817 92 HOH HOH . N 7 HOH A 18 818 152 HOH HOH . N 7 HOH A 19 819 16 HOH HOH . N 7 HOH A 20 820 162 HOH HOH . N 7 HOH A 21 821 37 HOH HOH . N 7 HOH A 22 822 182 HOH HOH . N 7 HOH A 23 823 96 HOH HOH . N 7 HOH A 24 824 52 HOH HOH . N 7 HOH A 25 825 175 HOH HOH . N 7 HOH A 26 826 88 HOH HOH . N 7 HOH A 27 827 158 HOH HOH . N 7 HOH A 28 828 161 HOH HOH . N 7 HOH A 29 829 33 HOH HOH . N 7 HOH A 30 830 20 HOH HOH . N 7 HOH A 31 831 2 HOH HOH . N 7 HOH A 32 832 46 HOH HOH . N 7 HOH A 33 833 66 HOH HOH . N 7 HOH A 34 834 57 HOH HOH . N 7 HOH A 35 835 91 HOH HOH . N 7 HOH A 36 836 89 HOH HOH . N 7 HOH A 37 837 105 HOH HOH . N 7 HOH A 38 838 140 HOH HOH . N 7 HOH A 39 839 113 HOH HOH . N 7 HOH A 40 840 84 HOH HOH . N 7 HOH A 41 841 19 HOH HOH . N 7 HOH A 42 842 7 HOH HOH . N 7 HOH A 43 843 197 HOH HOH . N 7 HOH A 44 844 114 HOH HOH . N 7 HOH A 45 845 143 HOH HOH . N 7 HOH A 46 846 22 HOH HOH . N 7 HOH A 47 847 44 HOH HOH . N 7 HOH A 48 848 80 HOH HOH . N 7 HOH A 49 849 156 HOH HOH . N 7 HOH A 50 850 115 HOH HOH . N 7 HOH A 51 851 13 HOH HOH . N 7 HOH A 52 852 201 HOH HOH . N 7 HOH A 53 853 98 HOH HOH . N 7 HOH A 54 854 126 HOH HOH . N 7 HOH A 55 855 75 HOH HOH . N 7 HOH A 56 856 196 HOH HOH . N 7 HOH A 57 857 15 HOH HOH . N 7 HOH A 58 858 59 HOH HOH . N 7 HOH A 59 859 8 HOH HOH . N 7 HOH A 60 860 94 HOH HOH . N 7 HOH A 61 861 21 HOH HOH . N 7 HOH A 62 862 1 HOH HOH . N 7 HOH A 63 863 48 HOH HOH . N 7 HOH A 64 864 77 HOH HOH . N 7 HOH A 65 865 116 HOH HOH . N 7 HOH A 66 866 50 HOH HOH . N 7 HOH A 67 867 120 HOH HOH . N 7 HOH A 68 868 129 HOH HOH . N 7 HOH A 69 869 56 HOH HOH . N 7 HOH A 70 870 188 HOH HOH . N 7 HOH A 71 871 51 HOH HOH . N 7 HOH A 72 872 9 HOH HOH . N 7 HOH A 73 873 11 HOH HOH . N 7 HOH A 74 874 195 HOH HOH . N 7 HOH A 75 875 42 HOH HOH . N 7 HOH A 76 876 12 HOH HOH . N 7 HOH A 77 877 27 HOH HOH . N 7 HOH A 78 878 200 HOH HOH . N 7 HOH A 79 879 54 HOH HOH . N 7 HOH A 80 880 149 HOH HOH . N 7 HOH A 81 881 128 HOH HOH . N 7 HOH A 82 882 40 HOH HOH . N 7 HOH A 83 883 160 HOH HOH . N 7 HOH A 84 884 74 HOH HOH . N 7 HOH A 85 885 28 HOH HOH . N 7 HOH A 86 886 138 HOH HOH . N 7 HOH A 87 887 10 HOH HOH . N 7 HOH A 88 888 107 HOH HOH . N 7 HOH A 89 889 26 HOH HOH . N 7 HOH A 90 890 38 HOH HOH . N 7 HOH A 91 891 148 HOH HOH . N 7 HOH A 92 892 49 HOH HOH . N 7 HOH A 93 893 61 HOH HOH . N 7 HOH A 94 894 18 HOH HOH . N 7 HOH A 95 895 163 HOH HOH . N 7 HOH A 96 896 136 HOH HOH . N 7 HOH A 97 897 102 HOH HOH . N 7 HOH A 98 898 104 HOH HOH . N 7 HOH A 99 899 63 HOH HOH . N 7 HOH A 100 900 30 HOH HOH . N 7 HOH A 101 901 23 HOH HOH . N 7 HOH A 102 902 78 HOH HOH . N 7 HOH A 103 903 86 HOH HOH . N 7 HOH A 104 904 198 HOH HOH . N 7 HOH A 105 905 90 HOH HOH . N 7 HOH A 106 906 151 HOH HOH . N 7 HOH A 107 907 60 HOH HOH . N 7 HOH A 108 908 29 HOH HOH . N 7 HOH A 109 909 14 HOH HOH . N 7 HOH A 110 910 67 HOH HOH . N 7 HOH A 111 911 35 HOH HOH . N 7 HOH A 112 912 117 HOH HOH . N 7 HOH A 113 913 39 HOH HOH . N 7 HOH A 114 914 17 HOH HOH . N 7 HOH A 115 915 99 HOH HOH . N 7 HOH A 116 916 45 HOH HOH . N 7 HOH A 117 917 25 HOH HOH . N 7 HOH A 118 918 36 HOH HOH . N 7 HOH A 119 919 169 HOH HOH . N 7 HOH A 120 920 165 HOH HOH . N 7 HOH A 121 921 83 HOH HOH . N 7 HOH A 122 922 64 HOH HOH . N 7 HOH A 123 923 127 HOH HOH . N 7 HOH A 124 924 97 HOH HOH . N 7 HOH A 125 925 53 HOH HOH . N 7 HOH A 126 926 41 HOH HOH . N 7 HOH A 127 927 58 HOH HOH . N 7 HOH A 128 928 32 HOH HOH . N 7 HOH A 129 929 132 HOH HOH . N 7 HOH A 130 930 34 HOH HOH . N 7 HOH A 131 931 184 HOH HOH . N 7 HOH A 132 932 187 HOH HOH . N 7 HOH A 133 933 178 HOH HOH . N 7 HOH A 134 934 159 HOH HOH . N 7 HOH A 135 935 122 HOH HOH . N 7 HOH A 136 936 131 HOH HOH . N 7 HOH A 137 937 93 HOH HOH . N 7 HOH A 138 938 3 HOH HOH . N 7 HOH A 139 939 123 HOH HOH . N 7 HOH A 140 940 110 HOH HOH . N 7 HOH A 141 941 73 HOH HOH . N 7 HOH A 142 942 68 HOH HOH . N 7 HOH A 143 943 103 HOH HOH . N 7 HOH A 144 944 82 HOH HOH . N 7 HOH A 145 945 106 HOH HOH . N 7 HOH A 146 946 168 HOH HOH . N 7 HOH A 147 947 24 HOH HOH . N 7 HOH A 148 948 189 HOH HOH . N 7 HOH A 149 949 142 HOH HOH . N 7 HOH A 150 950 95 HOH HOH . N 7 HOH A 151 951 72 HOH HOH . N 7 HOH A 152 952 155 HOH HOH . N 7 HOH A 153 953 121 HOH HOH . N 7 HOH A 154 954 176 HOH HOH . N 7 HOH A 155 955 111 HOH HOH . N 7 HOH A 156 956 101 HOH HOH . N 7 HOH A 157 957 183 HOH HOH . N 7 HOH A 158 958 70 HOH HOH . N 7 HOH A 159 959 135 HOH HOH . N 7 HOH A 160 960 141 HOH HOH . N 7 HOH A 161 961 65 HOH HOH . N 7 HOH A 162 962 124 HOH HOH . N 7 HOH A 163 963 193 HOH HOH . N 7 HOH A 164 964 134 HOH HOH . N 7 HOH A 165 965 185 HOH HOH . N 7 HOH A 166 966 164 HOH HOH . N 7 HOH A 167 967 194 HOH HOH . N 7 HOH A 168 968 145 HOH HOH . N 7 HOH A 169 969 170 HOH HOH . N 7 HOH A 170 970 62 HOH HOH . N 7 HOH A 171 971 146 HOH HOH . N 7 HOH A 172 972 150 HOH HOH . N 7 HOH A 173 973 144 HOH HOH . N 7 HOH A 174 974 79 HOH HOH . N 7 HOH A 175 975 153 HOH HOH . N 7 HOH A 176 976 76 HOH HOH . N 7 HOH A 177 977 118 HOH HOH . N 7 HOH A 178 978 166 HOH HOH . N 7 HOH A 179 979 130 HOH HOH . N 7 HOH A 180 980 179 HOH HOH . N 7 HOH A 181 981 125 HOH HOH . N 7 HOH A 182 982 167 HOH HOH . N 7 HOH A 183 983 199 HOH HOH . N 7 HOH A 184 984 108 HOH HOH . N 7 HOH A 185 985 186 HOH HOH . N 7 HOH A 186 986 180 HOH HOH . N 7 HOH A 187 987 133 HOH HOH . N 7 HOH A 188 988 139 HOH HOH . N 7 HOH A 189 989 174 HOH HOH . N 7 HOH A 190 990 192 HOH HOH . N 7 HOH A 191 991 109 HOH HOH . N 7 HOH A 192 992 112 HOH HOH . N 7 HOH A 193 993 100 HOH HOH . N 7 HOH A 194 994 172 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . K 5 -27.361 -20.663 24.886 1 39.31 ? P PO4 710 A 1 HETATM 2 O O1 PO4 . . . K 5 -27.343 -20.849 23.385 1 41.71 ? O1 PO4 710 A 1 HETATM 3 O O2 PO4 . . . K 5 -26.113 -21.261 25.473 1 34.17 ? O2 PO4 710 A 1 HETATM 4 O O3 PO4 . . . K 5 -28.555 -21.347 25.478 1 34.1 ? O3 PO4 710 A 1 HETATM 5 O O4 PO4 . . . K 5 -27.372 -19.195 25.241 1 32.83 ? O4 PO4 710 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 5 #